Wall clock time and date at job start Wed Apr 1 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 110.63813 * 2 1 4 4 C 1.34767 * 120.00314 * 61.68798 * 3 2 1 5 5 O 1.21279 * 120.00562 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99749 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47014 * 179.97438 * 6 4 3 8 8 N 1.46494 * 109.47235 * 179.97438 * 7 6 4 9 9 C 1.36830 * 125.06389 * 264.69870 * 8 7 6 10 10 C 1.34247 * 109.93110 * 179.85095 * 9 8 7 11 11 C 1.46483 * 106.99129 * 0.39720 * 10 9 8 12 12 C 1.39634 * 134.02669 * 179.75873 * 11 10 9 13 13 C 1.36629 * 119.76462 * 179.97438 * 12 11 10 14 14 C 1.38825 * 120.52782 * 0.02562 * 13 12 11 15 15 C 1.37753 * 120.66832 * 0.02562 * 14 13 12 16 16 C 1.37691 * 125.06133 * 85.00064 * 8 7 6 17 17 C 1.55153 * 110.87377 * 236.74953 * 2 1 3 18 18 C 1.55131 * 101.48647 * 205.89496 * 17 2 1 19 19 N 1.47426 * 104.71847 * 37.29562 * 18 17 2 20 20 C 1.36945 * 125.64675 * 155.81671 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68946 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68852 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47026 * 108.70569 * 335.55014 * 19 18 17 29 29 H 1.09007 * 109.47028 * 298.31682 * 1 2 3 30 30 H 1.09002 * 109.47138 * 58.31197 * 1 2 3 31 31 H 1.08998 * 109.47024 * 178.32089 * 1 2 3 32 32 H 0.97003 * 119.99598 * 241.68644 * 3 2 1 33 33 H 1.08999 * 109.47362 * 299.99219 * 6 4 3 34 34 H 1.08994 * 109.47608 * 60.00115 * 6 4 3 35 35 H 1.08999 * 109.47501 * 299.99950 * 7 6 4 36 36 H 1.09003 * 109.47212 * 59.99477 * 7 6 4 37 37 H 1.07997 * 125.03607 * 359.97438 * 9 8 7 38 38 H 1.07994 * 126.50116 * 180.14964 * 10 9 8 39 39 H 1.08003 * 120.11930 * 0.02562 * 12 11 10 40 40 H 1.08004 * 119.73753 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.66809 * 179.97438 * 14 13 12 42 42 H 1.07995 * 120.11042 * 179.97438 * 15 14 13 43 43 H 1.08999 * 111.00098 * 324.13870 * 17 2 1 44 44 H 1.08999 * 111.00564 * 87.98518 * 17 2 1 45 45 H 1.08994 * 110.50226 * 278.45550 * 18 17 2 46 46 H 1.09001 * 110.34274 * 156.05220 * 18 17 2 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.87851 * 120.70448 * 28 19 18 49 49 H 1.08997 * 109.88162 * 241.71678 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1968 1.0275 5 8 1.0856 1.8052 1.9520 6 6 2.2967 3.6073 1.0271 7 6 1.8358 4.3260 2.2968 8 7 2.3522 5.6969 2.2967 9 6 3.5020 6.1038 2.9170 10 6 3.6874 7.4187 2.7201 11 6 2.5596 7.8943 1.9154 12 6 2.1916 9.1389 1.4003 13 6 1.0452 9.2571 0.6663 14 6 0.2427 8.1496 0.4287 15 6 0.5864 6.9126 0.9282 16 6 1.7499 6.7690 1.6774 17 6 2.0828 -0.7949 -1.2124 18 6 3.4707 -1.2412 -0.6822 19 7 3.2471 -1.5460 0.7428 20 6 4.0078 -2.3898 1.5074 21 1 3.7635 -2.5433 2.5481 22 6 5.0927 -3.0479 0.9447 23 7 5.3906 -2.8605 -0.3236 24 14 6.1307 -4.1985 1.9878 25 1 7.2374 -3.4336 2.6166 26 1 5.2847 -4.8057 3.0465 27 1 6.6953 -5.2708 1.1296 28 6 2.0760 -0.7889 1.2087 29 1 -0.3633 0.4875 0.9048 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3633 -1.0272 -0.0301 32 1 2.5902 1.6844 -0.7396 33 1 3.3860 3.5856 0.9966 34 1 1.9192 4.1374 0.1527 35 1 0.7465 4.3477 2.3270 36 1 2.2129 3.7960 3.1715 37 1 4.1634 5.4618 3.4798 38 1 4.5098 8.0138 3.0888 39 1 2.8112 10.0049 1.5808 40 1 0.7607 10.2201 0.2685 41 1 -0.6606 8.2589 -0.1530 42 1 -0.0448 6.0572 0.7382 43 1 1.4514 -1.6546 -1.4365 44 1 2.1886 -0.1516 -2.0859 45 1 4.1970 -0.4355 -0.7883 46 1 3.8103 -2.1314 -1.2117 47 1 6.1490 -3.3201 -0.7167 48 1 1.3140 -1.4753 1.5782 49 1 2.3706 -0.1009 2.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500287041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:34 Heat of formation + Delta-G solvation = 53.644187 kcal Electronic energy + Delta-G solvation = -29282.101953 eV Core-core repulsion = 25403.348890 eV Total energy + Delta-G solvation = -3878.753063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.49437 -40.01340 -37.61892 -37.12320 -34.12277 -33.88982 -32.06382 -31.19468 -30.10845 -29.20213 -28.78582 -28.55120 -25.73131 -24.68399 -23.57141 -22.72220 -21.67168 -20.82017 -20.36196 -20.13184 -19.07551 -17.63403 -17.03365 -16.62667 -16.33789 -15.74113 -15.57658 -15.54891 -14.98832 -14.69725 -14.23101 -14.05906 -13.79814 -13.74125 -13.44342 -13.17822 -12.93481 -12.76447 -12.71173 -12.63531 -12.27479 -12.05139 -11.81430 -11.78395 -11.59937 -11.46456 -11.41539 -10.99881 -10.96845 -10.89134 -10.46739 -10.40565 -10.11487 -10.00633 -9.83790 -9.70237 -9.36479 -8.72298 -8.67535 -8.33217 -7.81253 -6.84710 -5.68268 -3.09055 0.97954 1.47955 2.52667 2.60638 2.77002 3.37988 3.42458 3.43693 3.45391 3.77601 4.46494 4.48834 4.52687 4.58817 4.67526 4.82994 4.88667 4.97839 5.11347 5.17362 5.26040 5.29046 5.34412 5.44064 5.46468 5.52046 5.56809 5.59284 5.68544 5.69439 5.79685 5.91104 5.97294 6.10741 6.18197 6.29656 6.30920 6.40370 6.45327 6.45567 6.61831 6.63740 6.65795 6.78214 7.07519 7.08276 7.14753 7.40731 7.60077 7.71713 7.80787 8.31808 8.40450 9.20003 9.80721 10.45274 11.35871 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002345 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.260217 B =11935.161251 C =12890.657090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.705 5.705 4 C 0.520 3.480 5 O -0.540 6.540 6 C -0.160 4.160 7 C 0.128 3.872 8 N -0.482 5.482 9 C 0.057 3.943 10 C -0.210 4.210 11 C -0.110 4.110 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.103 4.103 15 C -0.127 4.127 16 C 0.097 3.903 17 C -0.147 4.147 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.281 1.281 27 H -0.290 1.290 28 C 0.137 3.863 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.010 0.990 46 H 0.109 0.891 47 H 0.252 0.748 48 H 0.030 0.970 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 21.219 -0.717 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.073 3.927 3 N -0.356 5.356 4 C 0.305 3.695 5 O -0.417 6.417 6 C -0.201 4.201 7 C 0.006 3.994 8 N -0.164 5.164 9 C -0.068 4.068 10 C -0.235 4.235 11 C -0.115 4.115 12 C -0.092 4.092 13 C -0.169 4.169 14 C -0.122 4.122 15 C -0.147 4.147 16 C -0.009 4.009 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.331 5.331 20 C -0.346 4.346 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.216 1.216 28 C 0.011 3.989 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.028 0.972 46 H 0.126 0.874 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.692 20.421 -0.036 22.195 hybrid contribution 1.010 -0.454 0.114 1.113 sum -7.683 19.967 0.078 21.394 Atomic orbital electron populations 1.22028 0.94269 1.02208 1.02201 1.21369 0.92924 0.80313 0.98120 1.45994 1.53625 1.12831 1.23120 1.20147 0.80392 0.86601 0.82345 1.90690 1.39001 1.77017 1.35038 1.22035 1.03707 0.94076 1.00236 1.21486 1.00713 0.78584 0.98648 1.44107 1.20571 1.07110 1.44656 1.21921 0.89343 0.96003 0.99538 1.21667 1.00706 0.94185 1.06928 1.19250 0.96554 0.93097 1.02613 1.20258 0.96553 0.95437 0.96914 1.20605 0.95975 0.98643 1.01705 1.20787 0.99654 0.91879 0.99901 1.20068 0.95516 0.98361 1.00797 1.18295 0.96170 0.87090 0.99321 1.23397 1.01268 0.98860 0.95049 1.21989 0.89296 1.00626 0.85333 1.44519 1.30453 1.50506 1.07583 1.19091 1.05984 1.16649 0.92925 0.90560 1.24766 0.98796 1.00763 0.96469 1.69769 1.29990 1.46641 1.10992 0.86066 0.80220 0.80237 0.78973 1.21699 1.20683 1.21636 1.21593 0.90289 0.93157 0.93899 0.91093 0.93180 0.91724 0.76784 0.88242 0.88623 0.88788 0.88110 0.81391 0.83674 0.86277 0.86268 0.85945 0.86391 0.90482 0.91943 0.97220 0.87364 0.93776 0.95244 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.41 37.16 0.31 -1.93 16 2 C 0.16 2.72 0.81 -129.99 -0.10 2.61 16 3 N -0.71 -10.36 5.14 -45.91 -0.24 -10.60 16 4 C 0.52 7.45 7.05 -10.99 -0.08 7.37 16 5 O -0.54 -9.34 12.93 5.56 0.07 -9.27 16 6 C -0.16 -1.71 6.02 -27.88 -0.17 -1.88 16 7 C 0.13 1.36 5.29 -4.04 -0.02 1.34 16 8 N -0.48 -5.27 2.78 -114.43 -0.32 -5.58 16 9 C 0.06 0.57 11.27 -16.73 -0.19 0.39 16 10 C -0.21 -2.16 11.08 -37.67 -0.42 -2.58 16 11 C -0.11 -1.27 6.37 -105.14 -0.67 -1.94 16 12 C -0.07 -0.73 10.05 -39.64 -0.40 -1.12 16 13 C -0.15 -1.36 9.97 -39.95 -0.40 -1.76 16 14 C -0.10 -0.95 10.01 -39.54 -0.40 -1.35 16 15 C -0.13 -1.32 10.00 -39.43 -0.39 -1.72 16 16 C 0.10 1.13 6.81 -83.99 -0.57 0.56 16 17 C -0.15 -2.59 6.11 -24.46 -0.15 -2.74 16 18 C 0.15 3.55 5.88 -2.41 -0.01 3.53 16 19 N -0.60 -15.43 3.39 -169.93 -0.58 -16.01 16 20 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -26.59 10.08 55.49 0.56 -26.03 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.14 2.99 6.13 -3.06 -0.02 2.98 16 29 H 0.07 1.15 6.44 -51.93 -0.33 0.81 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.40 5.02 8.47 -40.82 -0.35 4.67 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 37 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 44 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.11 2.86 5.86 -51.93 -0.30 2.56 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 49 H 0.03 0.78 6.48 -51.93 -0.34 0.45 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -32.72 394.75 -11.10 -43.82 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.60 Total: 5.60 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.93 Total: -4.97 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.57 Total: -58.22 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.72 -11.10 -43.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500287041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.460 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds