Wall clock time and date at job start Wed Apr 1 2020 01:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46672 * 2 1 4 4 C 1.52997 * 109.47172 * 240.00430 * 2 1 3 5 5 H 1.08998 * 109.47225 * 65.31259 * 4 2 1 6 6 F 1.39899 * 109.47175 * 305.31413 * 4 2 1 7 7 C 1.50703 * 109.47094 * 185.31335 * 4 2 1 8 8 O 1.21277 * 120.00229 * 64.47895 * 7 4 2 9 9 N 1.34777 * 119.99782 * 244.47857 * 7 4 2 10 10 C 1.48318 * 128.20463 * 359.67994 * 9 7 4 11 11 C 1.53996 * 104.57823 * 221.86636 * 10 9 7 12 12 H 1.09001 * 112.89652 * 97.90620 * 11 10 9 13 13 C 1.55903 * 108.94876 * 224.42423 * 11 10 9 14 14 N 1.48733 * 104.36775 * 136.69228 * 13 11 10 15 15 C 1.46893 * 110.99961 * 198.76051 * 14 13 11 16 16 C 1.50703 * 109.47457 * 284.52654 * 15 14 13 17 17 O 1.21296 * 119.99751 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00244 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99833 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00349 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00164 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00269 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99604 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 90.00167 * 23 21 19 25 25 H 1.48504 * 109.46561 * 209.99967 * 23 21 19 26 26 H 1.48495 * 109.47125 * 329.99455 * 23 21 19 27 27 C 1.48727 * 103.49349 * 317.89795 * 14 13 11 28 28 C 1.54405 * 104.35306 * 41.80086 * 27 14 13 29 29 H 1.08995 * 112.56903 * 98.12754 * 28 27 14 30 30 C 1.48313 * 128.20330 * 179.97438 * 9 7 4 31 31 H 1.09010 * 109.47180 * 175.18998 * 1 2 3 32 32 H 1.09002 * 109.47294 * 55.19610 * 1 2 3 33 33 H 1.08995 * 109.47405 * 295.19339 * 1 2 3 34 34 H 1.08993 * 109.47015 * 120.00221 * 2 1 3 35 35 H 1.09004 * 109.47326 * 60.00564 * 3 2 1 36 36 H 1.09002 * 109.47104 * 179.97438 * 3 2 1 37 37 H 1.08993 * 109.47581 * 299.99874 * 3 2 1 38 38 H 1.09004 * 110.45430 * 340.62042 * 10 9 7 39 39 H 1.08996 * 110.45999 * 103.18123 * 10 9 7 40 40 H 1.09004 * 110.70546 * 17.83966 * 13 11 10 41 41 H 1.08998 * 110.30200 * 255.34241 * 13 11 10 42 42 H 1.09005 * 109.47637 * 44.52362 * 15 14 13 43 43 H 1.08999 * 109.46875 * 164.52506 * 15 14 13 44 44 H 0.97000 * 120.00324 * 359.97438 * 18 16 15 45 45 H 0.97000 * 119.99719 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.46070 * 283.08034 * 27 14 13 47 47 H 1.09001 * 110.56585 * 160.57369 * 27 14 13 48 48 H 1.09000 * 110.45311 * 256.81815 * 30 9 7 49 49 H 1.08999 * 110.45320 * 19.24512 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.7565 -0.1553 -2.1367 6 9 1.4766 -2.0001 -1.3121 7 6 3.5413 -0.8361 -1.1852 8 8 4.0620 -1.5003 -0.3143 9 7 4.3052 -0.2008 -2.0959 10 6 3.8656 0.6462 -3.2313 11 6 4.7786 0.2318 -4.4002 12 1 4.3093 -0.4887 -5.0700 13 6 5.2758 1.5146 -5.1335 14 7 6.7208 1.2622 -5.3799 15 6 7.4349 2.5163 -5.6539 16 6 7.1199 2.9784 -7.0533 17 8 6.3734 2.3272 -7.7534 18 7 7.6676 4.1150 -7.5270 19 6 7.3806 4.5356 -8.7999 20 1 6.7159 3.9558 -9.4233 21 6 7.9448 5.7078 -9.2882 22 7 7.6701 6.1107 -10.5085 23 14 9.0950 6.7102 -8.2103 24 1 10.4915 6.2474 -8.4122 25 1 8.9914 8.1456 -8.5769 26 1 8.7164 6.5348 -6.7852 27 6 7.1879 0.6499 -4.1076 28 6 6.0594 -0.3288 -3.7168 29 1 6.2769 -1.3561 -4.0088 30 6 5.7843 -0.1878 -2.2035 31 1 -0.3634 -1.0241 -0.0862 32 1 -0.3634 0.5866 -0.8438 33 1 -0.3634 0.4374 0.9298 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.8223 0.4453 -3.4749 39 1 4.0066 1.7012 -2.9966 40 1 5.1447 2.3942 -4.5032 41 1 4.7449 1.6407 -6.0771 42 1 7.1195 3.2776 -4.9404 43 1 8.5082 2.3515 -5.5586 44 1 8.2643 4.6360 -6.9671 45 1 8.0637 6.9291 -10.8491 46 1 7.3123 1.4139 -3.3401 47 1 8.1227 0.1111 -4.2625 48 1 6.1852 0.7543 -1.8295 49 1 6.2134 -1.0272 -1.6565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501226376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:44 Heat of formation + Delta-G solvation = -99.431243 kcal Electronic energy + Delta-G solvation = -30373.771519 eV Core-core repulsion = 26057.611382 eV Total energy + Delta-G solvation = -4316.160137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.24527 -40.84106 -39.24174 -38.16738 -36.02357 -35.91409 -33.95629 -31.99799 -31.61460 -30.86005 -28.72269 -27.57367 -27.18056 -26.05559 -24.80927 -23.50794 -21.59652 -21.25726 -19.98862 -19.62721 -19.31745 -18.28014 -18.19415 -16.84761 -16.66543 -16.25954 -15.84895 -15.81736 -15.48293 -15.07388 -14.86762 -14.66939 -14.49027 -14.43030 -13.59449 -13.46195 -13.36110 -13.20127 -13.12954 -12.95562 -12.76739 -12.66380 -12.50424 -12.36515 -12.31732 -12.00862 -11.66747 -11.62662 -11.58866 -11.47390 -11.30068 -11.15972 -11.00654 -10.93318 -10.81952 -10.62572 -10.06144 -10.00418 -9.58609 -9.21635 -8.71139 -8.22465 -8.17899 -6.33606 -3.85099 2.03629 2.32519 2.98892 3.04045 3.12409 3.69367 3.71338 3.83726 3.88298 4.07195 4.08599 4.15024 4.29706 4.34518 4.52924 4.62263 4.73905 4.80690 4.92434 4.95781 4.96204 4.99705 5.08690 5.16103 5.17228 5.21467 5.29888 5.35220 5.38066 5.43272 5.43517 5.54435 5.55549 5.62131 5.62666 5.69917 5.75487 5.76769 5.86294 5.93670 6.04153 6.18953 6.86704 6.98422 7.03112 7.55481 7.60521 8.11624 8.57593 8.92843 9.39824 9.80820 10.79523 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.002139 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.447240 B =13088.757405 C =13462.948325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.150 4.150 4 C 0.087 3.913 5 H 0.102 0.898 6 F -0.186 7.186 7 C 0.518 3.482 8 O -0.524 6.524 9 N -0.618 5.618 10 C 0.098 3.902 11 C -0.101 4.101 12 H 0.103 0.897 13 C 0.042 3.958 14 N -0.479 5.479 15 C 0.030 3.970 16 C 0.454 3.546 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.034 3.966 28 C -0.100 4.100 29 H 0.099 0.901 30 C 0.107 3.893 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 -8.470 22.304 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.207 4.207 4 C 0.048 3.952 5 H 0.119 0.881 6 F -0.167 7.167 7 C 0.304 3.696 8 O -0.400 6.400 9 N -0.352 5.352 10 C -0.025 4.025 11 C -0.120 4.120 12 H 0.121 0.879 13 C -0.086 4.086 14 N -0.203 5.203 15 C -0.102 4.102 16 C 0.239 3.761 17 O -0.439 6.439 18 N -0.232 5.232 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.094 4.094 28 C -0.120 4.120 29 H 0.118 0.882 30 C -0.015 4.015 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.841 -9.537 21.732 25.326 hybrid contribution 0.955 1.547 1.266 2.216 sum -7.887 -7.990 22.999 25.593 Atomic orbital electron populations 1.21830 0.93116 1.02967 1.02675 1.21634 0.97689 0.97107 0.96919 1.21834 1.01369 0.94451 1.03093 1.21656 0.89609 0.81692 1.02292 0.88053 1.92878 1.85260 1.40839 1.97725 1.20533 0.88990 0.79162 0.80892 1.90742 1.74402 1.39874 1.34958 1.49209 1.07987 1.49128 1.28859 1.22763 0.99583 0.94949 0.85158 1.23177 0.94957 0.98259 0.95654 0.87889 1.23603 0.89967 0.94112 1.00935 1.65429 1.02454 1.22792 1.29584 1.22098 0.99939 0.91252 0.96868 1.19583 0.85331 0.82867 0.88324 1.90557 1.38586 1.55599 1.59176 1.42212 1.43851 1.22143 1.15026 1.19415 1.27983 1.07347 0.88516 0.86278 1.25041 0.97992 0.97070 0.96103 1.69619 1.43756 1.23634 1.15136 0.86677 0.81705 0.80806 0.80199 1.19608 1.20210 1.19592 1.23330 0.98223 0.96517 0.91336 1.22953 0.95023 1.00729 0.93305 0.88230 1.22673 0.79673 1.02839 0.96303 0.91615 0.92062 0.91571 0.88988 0.91208 0.92402 0.91807 0.89871 0.89892 0.93769 0.88164 0.92995 0.89089 0.79779 0.91615 0.93525 0.89652 0.90476 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.09 37.16 0.34 -0.54 16 2 C -0.11 -0.84 2.72 -90.62 -0.25 -1.09 16 3 C -0.15 -0.91 9.01 37.16 0.33 -0.58 16 4 C 0.09 0.77 3.21 -27.88 -0.09 0.68 16 5 H 0.10 0.66 5.98 -51.93 -0.31 0.35 16 6 F -0.19 -2.08 16.25 2.25 0.04 -2.04 16 7 C 0.52 5.77 6.04 -10.98 -0.07 5.71 16 8 O -0.52 -7.81 17.26 5.56 0.10 -7.71 16 9 N -0.62 -5.80 3.31 -169.23 -0.56 -6.36 16 10 C 0.10 0.76 6.39 -2.52 -0.02 0.74 16 11 C -0.10 -0.98 4.23 -87.16 -0.37 -1.35 16 12 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.04 0.53 5.50 -1.26 -0.01 0.52 16 14 N -0.48 -6.84 4.99 -230.08 -1.15 -7.99 16 15 C 0.03 0.47 5.34 -4.98 -0.03 0.44 16 16 C 0.45 9.83 7.64 -10.99 -0.08 9.75 16 17 O -0.56 -14.36 14.85 5.54 0.08 -14.28 16 18 N -0.59 -13.63 5.09 -10.96 -0.06 -13.68 16 19 C -0.30 -8.39 10.16 -14.93 -0.15 -8.54 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 23 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 27 C 0.03 0.35 5.94 -2.07 -0.01 0.34 16 28 C -0.10 -0.94 4.13 -87.73 -0.36 -1.30 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 C 0.11 0.96 6.59 -2.28 -0.02 0.94 16 31 H 0.06 0.44 7.53 -51.92 -0.39 0.04 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.51 6.36 -51.93 -0.33 0.17 16 39 H 0.08 0.57 7.19 -51.93 -0.37 0.19 16 40 H 0.04 0.50 6.86 -51.93 -0.36 0.14 16 41 H 0.10 1.58 7.25 -51.93 -0.38 1.20 16 42 H 0.05 0.69 7.77 -51.93 -0.40 0.29 16 43 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 44 H 0.37 7.43 5.76 -40.82 -0.24 7.20 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.05 0.42 7.05 -51.93 -0.37 0.05 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.61 7.18 -51.93 -0.37 0.24 16 49 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -34.49 388.68 -8.16 -42.65 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.66 Total: 7.22 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.87 Total: 6.73 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.99 Total: -52.61 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.18 Total: -21.99 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.49 -8.16 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501226376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.782 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds