Wall clock time and date at job start Wed Apr 1 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46672 * 2 1 4 4 C 1.52997 * 109.47172 * 240.00430 * 2 1 3 5 5 H 1.08998 * 109.47225 * 65.31259 * 4 2 1 6 6 F 1.39899 * 109.47175 * 305.31413 * 4 2 1 7 7 C 1.50703 * 109.47094 * 185.31335 * 4 2 1 8 8 O 1.21277 * 120.00229 * 64.47895 * 7 4 2 9 9 N 1.34777 * 119.99782 * 244.47857 * 7 4 2 10 10 C 1.48318 * 128.20463 * 359.67994 * 9 7 4 11 11 C 1.53996 * 104.57823 * 221.86636 * 10 9 7 12 12 H 1.09001 * 112.89652 * 97.90620 * 11 10 9 13 13 C 1.55903 * 108.94876 * 224.42423 * 11 10 9 14 14 N 1.48733 * 104.36775 * 136.69228 * 13 11 10 15 15 C 1.46893 * 110.99961 * 198.76051 * 14 13 11 16 16 C 1.50703 * 109.47457 * 284.52654 * 15 14 13 17 17 O 1.21296 * 119.99751 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00244 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99833 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00349 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00164 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00269 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99604 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 90.00167 * 23 21 19 25 25 H 1.48504 * 109.46561 * 209.99967 * 23 21 19 26 26 H 1.48495 * 109.47125 * 329.99455 * 23 21 19 27 27 C 1.48727 * 103.49349 * 317.89795 * 14 13 11 28 28 C 1.54405 * 104.35306 * 41.80086 * 27 14 13 29 29 H 1.08995 * 112.56903 * 98.12754 * 28 27 14 30 30 C 1.48313 * 128.20330 * 179.97438 * 9 7 4 31 31 H 1.09010 * 109.47180 * 175.18998 * 1 2 3 32 32 H 1.09002 * 109.47294 * 55.19610 * 1 2 3 33 33 H 1.08995 * 109.47405 * 295.19339 * 1 2 3 34 34 H 1.08993 * 109.47015 * 120.00221 * 2 1 3 35 35 H 1.09004 * 109.47326 * 60.00564 * 3 2 1 36 36 H 1.09002 * 109.47104 * 179.97438 * 3 2 1 37 37 H 1.08993 * 109.47581 * 299.99874 * 3 2 1 38 38 H 1.09004 * 110.45430 * 340.62042 * 10 9 7 39 39 H 1.08996 * 110.45999 * 103.18123 * 10 9 7 40 40 H 1.09004 * 110.70546 * 17.83966 * 13 11 10 41 41 H 1.08998 * 110.30200 * 255.34241 * 13 11 10 42 42 H 1.09005 * 109.47637 * 44.52362 * 15 14 13 43 43 H 1.08999 * 109.46875 * 164.52506 * 15 14 13 44 44 H 0.97000 * 120.00324 * 359.97438 * 18 16 15 45 45 H 0.97000 * 119.99719 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.46070 * 283.08034 * 27 14 13 47 47 H 1.09001 * 110.56585 * 160.57369 * 27 14 13 48 48 H 1.09000 * 110.45311 * 256.81815 * 30 9 7 49 49 H 1.08999 * 110.45320 * 19.24512 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.7565 -0.1553 -2.1367 6 9 1.4766 -2.0001 -1.3121 7 6 3.5413 -0.8361 -1.1852 8 8 4.0620 -1.5003 -0.3143 9 7 4.3052 -0.2008 -2.0959 10 6 3.8656 0.6462 -3.2313 11 6 4.7786 0.2318 -4.4002 12 1 4.3093 -0.4887 -5.0700 13 6 5.2758 1.5146 -5.1335 14 7 6.7208 1.2622 -5.3799 15 6 7.4349 2.5163 -5.6539 16 6 7.1199 2.9784 -7.0533 17 8 6.3734 2.3272 -7.7534 18 7 7.6676 4.1150 -7.5270 19 6 7.3806 4.5356 -8.7999 20 1 6.7159 3.9558 -9.4233 21 6 7.9448 5.7078 -9.2882 22 7 7.6701 6.1107 -10.5085 23 14 9.0950 6.7102 -8.2103 24 1 10.4915 6.2474 -8.4122 25 1 8.9914 8.1456 -8.5769 26 1 8.7164 6.5348 -6.7852 27 6 7.1879 0.6499 -4.1076 28 6 6.0594 -0.3288 -3.7168 29 1 6.2769 -1.3561 -4.0088 30 6 5.7843 -0.1878 -2.2035 31 1 -0.3634 -1.0241 -0.0862 32 1 -0.3634 0.5866 -0.8438 33 1 -0.3634 0.4374 0.9298 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.8223 0.4453 -3.4749 39 1 4.0066 1.7012 -2.9966 40 1 5.1447 2.3942 -4.5032 41 1 4.7449 1.6407 -6.0771 42 1 7.1195 3.2776 -4.9404 43 1 8.5082 2.3515 -5.5586 44 1 8.2643 4.6360 -6.9671 45 1 8.0637 6.9291 -10.8491 46 1 7.3123 1.4139 -3.3401 47 1 8.1227 0.1111 -4.2625 48 1 6.1852 0.7543 -1.8295 49 1 6.2134 -1.0272 -1.6565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501226376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:43 Heat of formation + Delta-G solvation = -125.375822 kcal Electronic energy + Delta-G solvation = -30374.896561 eV Core-core repulsion = 26057.611382 eV Total energy + Delta-G solvation = -4317.285178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.02340 -41.67624 -40.42220 -39.59679 -36.94263 -36.60605 -35.87210 -33.73357 -32.86323 -31.63994 -29.60801 -28.38005 -27.98123 -26.87214 -26.28222 -24.59710 -22.51165 -21.90598 -21.25473 -20.76327 -20.37400 -20.04121 -18.94100 -17.74150 -17.56886 -17.40992 -16.90578 -16.82007 -16.56326 -16.34412 -15.94910 -15.74165 -15.55034 -15.18380 -15.03556 -14.60407 -14.55358 -14.31026 -13.97947 -13.96505 -13.68794 -13.66690 -13.38871 -13.20449 -13.09065 -13.04160 -12.99267 -12.57164 -12.42377 -12.34901 -12.19702 -12.10195 -11.99161 -11.95878 -11.87516 -11.65449 -11.55729 -11.46273 -10.90429 -10.38309 -10.20891 -9.98916 -9.32739 -8.38405 -5.98881 1.20826 1.31470 1.37849 1.46202 1.58854 2.01098 2.25271 2.68641 2.98756 3.17068 3.22525 3.28140 3.44490 3.52087 3.57758 3.72911 3.83467 4.02213 4.10366 4.16680 4.21183 4.23349 4.29306 4.37053 4.39756 4.46907 4.50508 4.57007 4.65640 4.72178 4.74934 4.75242 4.83359 4.84495 4.91580 4.95335 5.09863 5.12391 5.17499 5.26482 5.28717 5.32007 5.55678 5.90202 5.92924 6.05401 6.26421 6.63441 6.79522 6.92607 7.44338 8.02481 8.79315 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.002139 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.447240 B =13088.757405 C =13462.948325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.083 3.917 5 H 0.130 0.870 6 F -0.202 7.202 7 C 0.514 3.486 8 O -0.571 6.571 9 N -0.614 5.614 10 C 0.102 3.898 11 C -0.096 4.096 12 H 0.094 0.906 13 C 0.044 3.956 14 N -0.514 5.514 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.607 6.607 18 N -0.595 5.595 19 C -0.324 4.324 20 H 0.054 0.946 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.259 1.259 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.041 3.959 28 C -0.095 4.095 29 H 0.094 0.906 30 C 0.109 3.891 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -6.847 25.546 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.044 3.956 5 H 0.148 0.852 6 F -0.183 7.183 7 C 0.302 3.698 8 O -0.450 6.450 9 N -0.346 5.346 10 C -0.020 4.020 11 C -0.116 4.116 12 H 0.112 0.888 13 C -0.084 4.084 14 N -0.238 5.238 15 C -0.088 4.088 16 C 0.240 3.760 17 O -0.491 6.491 18 N -0.237 5.237 19 C -0.454 4.454 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.184 1.184 25 H -0.203 1.203 26 H -0.152 1.152 27 C -0.086 4.086 28 C -0.115 4.115 29 H 0.112 0.888 30 C -0.013 4.013 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.224 0.776 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.886 -7.923 24.986 27.373 hybrid contribution 0.585 0.918 0.144 1.098 sum -7.301 -7.005 25.130 27.090 Atomic orbital electron populations 1.21825 0.91902 1.02680 1.03903 1.21630 0.98615 0.97619 0.95288 1.21823 1.00579 0.93501 1.04435 1.21928 0.88041 0.81280 1.04306 0.85206 1.92844 1.85362 1.42228 1.97877 1.20941 0.89957 0.78453 0.80440 1.90717 1.75364 1.41967 1.36922 1.49246 1.08299 1.48523 1.28563 1.22865 1.00131 0.95548 0.83471 1.23069 0.95626 0.96881 0.96014 0.88800 1.23511 0.89117 0.96232 0.99543 1.65325 1.03257 1.22599 1.32580 1.21998 1.01760 0.92691 0.92363 1.20931 0.83133 0.81382 0.90530 1.90544 1.40339 1.56806 1.61376 1.42048 1.44851 1.23156 1.13636 1.18976 1.28230 1.07769 0.90377 0.92751 1.26121 0.99738 0.97976 0.97767 1.69809 1.45559 1.24563 1.17838 0.85367 0.78604 0.77795 0.79753 1.18387 1.20254 1.15161 1.23361 0.98379 0.96897 0.90009 1.22879 0.94660 1.00380 0.93569 0.88793 1.22712 0.79495 1.03465 0.95593 0.92724 0.90628 0.90510 0.91099 0.90300 0.93549 0.90079 0.87968 0.87868 0.91743 0.92352 0.89572 0.86314 0.77554 0.91263 0.90961 0.89025 0.88508 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.09 71.98 0.65 -0.80 16 2 C -0.11 -1.49 2.72 -10.80 -0.03 -1.52 16 3 C -0.15 -1.39 9.01 71.98 0.65 -0.74 16 4 C 0.08 1.35 3.21 29.85 0.10 1.44 16 5 H 0.13 1.30 5.98 -2.39 -0.01 1.28 16 6 F -0.20 -4.41 16.25 44.97 0.73 -3.68 16 7 C 0.51 10.86 6.04 87.66 0.53 11.39 16 8 O -0.57 -17.00 17.26 -3.02 -0.05 -17.05 16 9 N -0.61 -10.10 3.31 -807.71 -2.68 -12.78 16 10 C 0.10 1.25 6.39 86.37 0.55 1.80 16 11 C -0.10 -1.69 4.23 -8.55 -0.04 -1.72 16 12 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 13 C 0.04 1.04 5.50 86.95 0.48 1.52 16 14 N -0.51 -13.49 4.99 -881.84 -4.40 -17.89 16 15 C 0.04 1.19 5.34 85.56 0.46 1.65 16 16 C 0.45 19.40 7.64 87.66 0.67 20.06 16 17 O -0.61 -32.45 14.85 -3.08 -0.05 -32.50 16 18 N -0.59 -26.92 5.09 -306.98 -1.56 -28.48 16 19 C -0.32 -18.56 10.16 84.04 0.85 -17.71 16 20 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 21 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 22 N -0.94 -55.85 13.96 21.66 0.30 -55.55 16 23 Si 0.96 37.68 27.74 68.60 1.90 39.58 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 26 H -0.23 -7.31 6.52 99.48 0.65 -6.67 16 27 C 0.04 0.69 5.94 86.43 0.51 1.21 16 28 C -0.09 -1.56 4.13 -8.92 -0.04 -1.60 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 C 0.11 1.66 6.59 86.52 0.57 2.23 16 31 H 0.05 0.67 7.53 -2.38 -0.02 0.65 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 35 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.05 0.56 7.39 -2.39 -0.02 0.54 16 37 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.89 6.36 -2.38 -0.02 0.87 16 39 H 0.10 0.94 7.19 -2.39 -0.02 0.93 16 40 H 0.06 1.24 6.86 -2.39 -0.02 1.22 16 41 H 0.06 1.87 7.25 -2.39 -0.02 1.86 16 42 H 0.09 1.83 7.77 -2.38 -0.02 1.81 16 43 H 0.12 2.65 8.08 -2.39 -0.02 2.63 16 44 H 0.39 14.39 5.76 -92.71 -0.53 13.85 16 45 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.07 0.90 7.05 -2.39 -0.02 0.88 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.10 1.13 7.18 -2.39 -0.02 1.12 16 49 H 0.08 1.35 7.87 -2.39 -0.02 1.33 16 Total: -1.00 -82.98 388.68 0.96 -82.02 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.37 Total: 29.60 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.39 Total: 16.71 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -8.34 Total: -114.69 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.10 Total: -49.54 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.73 Total: -3.68 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.90 Total: 39.58 kcal Total: -82.98 0.96 -82.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501226376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.356 kcal (2) G-P(sol) polarization free energy of solvation -82.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds