Wall clock time and date at job start Wed Apr 1 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99805 * 2 1 4 4 C 1.52994 * 109.47206 * 269.99685 * 3 2 1 5 5 C 1.52995 * 109.47749 * 300.00094 * 4 3 2 6 6 C 1.53002 * 109.46781 * 60.00218 * 4 3 2 7 7 C 1.53005 * 109.47310 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47352 * 180.02562 * 7 4 3 9 9 C 1.36938 * 120.00394 * 180.02562 * 8 7 4 10 10 H 1.08002 * 119.99482 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00350 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99849 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99938 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47468 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47147 * 120.00088 * 13 11 9 16 16 H 1.48500 * 109.47296 * 239.99683 * 13 11 9 17 17 C 1.34779 * 120.00496 * 179.97438 * 2 1 3 18 18 O 1.21545 * 120.00720 * 185.12492 * 17 2 1 19 19 C 1.47894 * 119.99568 * 5.12859 * 17 2 1 20 20 C 1.40597 * 119.72840 * 140.14251 * 19 17 2 21 21 C 1.35853 * 120.95130 * 179.72038 * 20 19 17 22 22 C 1.40487 * 119.88473 * 0.27925 * 21 20 19 23 23 C 1.40477 * 121.85557 * 180.02562 * 22 21 20 24 24 N 1.31211 * 119.94635 * 179.97438 * 23 22 21 25 25 C 1.32554 * 122.80487 * 359.97438 * 24 23 22 26 26 C 1.36219 * 121.84527 * 0.02562 * 25 24 23 27 27 C 1.40760 * 118.67599 * 359.95612 * 26 25 24 28 28 C 1.38525 * 119.73210 * 320.42525 * 19 17 2 29 29 H 1.09001 * 109.46854 * 265.11418 * 1 2 3 30 30 H 1.08994 * 109.47209 * 25.11564 * 1 2 3 31 31 H 1.09001 * 109.47063 * 145.12273 * 1 2 3 32 32 H 1.08995 * 109.46985 * 30.00607 * 3 2 1 33 33 H 1.09008 * 109.47087 * 150.00039 * 3 2 1 34 34 H 1.09002 * 109.46835 * 59.99341 * 5 4 3 35 35 H 1.08998 * 109.47831 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47128 * 300.00293 * 5 4 3 37 37 H 1.09002 * 109.47163 * 60.00022 * 6 4 3 38 38 H 1.08999 * 109.47084 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47111 * 299.99614 * 6 4 3 40 40 H 1.09005 * 109.47103 * 300.00876 * 7 4 3 41 41 H 1.09000 * 109.46636 * 60.00277 * 7 4 3 42 42 H 0.97005 * 120.00365 * 0.02562 * 8 7 4 43 43 H 0.96999 * 119.99793 * 179.97438 * 12 11 9 44 44 H 1.07994 * 119.52430 * 359.97438 * 20 19 17 45 45 H 1.08006 * 120.05716 * 180.29871 * 21 20 19 46 46 H 1.08005 * 120.02443 * 359.95610 * 23 22 21 47 47 H 1.08006 * 119.08008 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.66654 * 180.02562 * 26 25 24 49 49 H 1.08006 * 120.36351 * 359.96902 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2794 0.6443 -2.1637 6 6 1.1156 1.8933 -2.1637 7 6 3.2169 3.0358 -1.4425 8 7 3.4606 3.4590 -2.8236 9 6 4.1336 4.6250 -3.0739 10 1 4.4844 5.2329 -2.2529 11 6 4.3641 5.0263 -4.3826 12 7 3.9361 4.2858 -5.3830 13 14 5.2815 6.6172 -4.7239 14 1 5.6539 7.2597 -3.4378 15 1 6.5106 6.3224 -5.5034 16 1 4.4101 7.5341 -5.5018 17 6 2.1390 -1.1672 0.0005 18 8 3.3508 -1.1693 0.0945 19 6 1.4039 -2.4455 -0.1134 20 6 1.9281 -3.4830 -0.9044 21 6 1.2765 -4.6693 -1.0220 22 6 0.0581 -4.8682 -0.3515 23 6 -0.6499 -6.0780 -0.4437 24 7 -1.7846 -6.2234 0.1989 25 6 -2.3124 -5.2669 0.9497 26 6 -1.7053 -4.0574 1.1046 27 6 -0.4830 -3.8259 0.4460 28 6 0.2018 -2.6087 0.5553 29 1 -0.3633 -0.0875 1.0240 30 1 -0.3633 0.9304 -0.4362 31 1 -0.3633 -0.8431 -0.5876 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5139 34 1 2.7344 -0.2998 -2.1637 35 1 3.4607 0.9587 -3.1915 36 1 4.2318 0.5139 -1.6499 37 1 0.5265 2.6530 -1.6498 38 1 1.2972 2.2084 -3.1912 39 1 0.5706 0.9493 -2.1637 40 1 2.6274 3.7953 -0.9287 41 1 4.1693 2.9059 -0.9285 42 1 3.1452 2.9133 -3.5610 43 1 4.0968 4.5663 -6.2975 44 1 2.8641 -3.3362 -1.4226 45 1 1.6947 -5.4582 -1.6297 46 1 -0.2607 -6.8876 -1.0432 47 1 -3.2502 -5.4517 1.4527 48 1 -2.1522 -3.2917 1.7214 49 1 -0.2002 -1.8083 1.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505843926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:40 Heat of formation + Delta-G solvation = 41.319310 kcal Electronic energy + Delta-G solvation = -29508.812330 eV Core-core repulsion = 25629.524819 eV Total energy + Delta-G solvation = -3879.287510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39117 -40.23781 -37.81900 -36.97325 -35.30775 -33.54761 -33.05085 -31.66681 -30.35450 -29.92518 -27.97915 -26.92790 -26.28342 -25.53773 -24.59626 -23.96638 -22.70033 -22.47440 -20.28072 -18.44338 -18.30814 -17.66931 -17.40317 -17.22819 -16.28826 -16.05500 -15.77075 -15.34522 -14.69770 -14.62736 -14.32956 -14.20346 -14.09132 -13.95777 -13.66230 -13.33554 -13.22273 -13.02849 -12.89298 -12.70267 -12.50324 -12.46067 -12.26030 -12.01984 -11.46653 -11.27214 -11.14928 -10.97946 -10.82479 -10.75335 -10.62049 -10.33907 -10.24940 -10.09930 -9.91705 -9.76150 -9.66460 -9.42899 -8.84947 -8.65161 -8.49267 -6.87307 -5.74135 -3.01586 -0.17088 0.35771 1.44195 2.27185 2.73710 3.03086 3.44640 3.50397 3.52539 3.65976 3.96607 4.05519 4.13642 4.36338 4.42509 4.61730 4.62111 4.66405 4.86646 4.89652 5.02823 5.10872 5.13679 5.23519 5.26764 5.28336 5.37982 5.46489 5.51739 5.58086 5.66071 5.69756 5.83749 5.87134 5.92903 5.96247 6.08950 6.12756 6.17765 6.27366 6.32876 6.38859 6.49321 6.58506 6.73011 6.76223 6.93267 6.95565 7.22355 7.54945 7.73200 8.02061 8.45439 9.56627 10.15631 10.50292 11.49085 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002139 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.702583 B =13084.783304 C =13276.482410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.601 5.601 3 C 0.126 3.874 4 C -0.086 4.086 5 C -0.125 4.125 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.728 5.728 9 C -0.235 4.235 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.554 3.446 18 O -0.520 6.520 19 C -0.095 4.095 20 C -0.074 4.074 21 C -0.090 4.090 22 C -0.100 4.100 23 C 0.146 3.854 24 N -0.487 5.487 25 C 0.072 3.928 26 C -0.148 4.148 27 C -0.032 4.032 28 C -0.086 4.086 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.165 0.835 47 H 0.154 0.846 48 H 0.140 0.860 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 -19.763 13.953 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.333 5.333 3 C 0.004 3.996 4 C -0.087 4.087 5 C -0.182 4.182 6 C -0.194 4.194 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.342 3.658 18 O -0.396 6.396 19 C -0.099 4.099 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.103 4.103 23 C -0.026 4.026 24 N -0.194 5.194 25 C -0.070 4.070 26 C -0.168 4.168 27 C -0.037 4.037 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.182 0.818 47 H 0.171 0.829 48 H 0.158 0.842 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.683 -20.311 14.078 28.248 hybrid contribution 0.735 1.613 -0.471 1.835 sum -12.948 -18.698 13.606 26.502 Atomic orbital electron populations 1.22296 0.79958 1.04340 1.01193 1.47667 1.06814 1.06100 1.72693 1.21637 0.97556 0.83086 0.97357 1.21107 0.96493 0.97038 0.94065 1.21722 0.99182 0.96212 1.01111 1.21886 0.95732 0.99842 1.01902 1.20581 0.95712 0.91091 0.88911 1.42392 1.68148 1.25803 1.00952 1.19284 1.27519 0.98096 0.91750 0.91205 1.24721 1.01841 0.99000 0.95596 1.69666 1.51741 1.38844 0.98092 0.86122 0.79186 0.83212 0.77716 1.20602 1.21938 1.21965 1.18256 0.87181 0.83379 0.77026 1.90828 1.13237 1.86898 1.48659 1.20102 0.95135 0.95231 0.99472 1.20919 0.99902 0.91727 0.96685 1.20923 0.93572 0.97712 0.98777 1.19162 0.96761 0.95500 0.98835 1.23269 0.89739 0.94894 0.94712 1.67397 1.11891 1.33007 1.07144 1.22196 0.99685 0.89262 0.95893 1.21957 0.95060 0.99268 1.00490 1.18099 0.95115 0.93744 0.96727 1.21808 0.93309 0.96628 0.98691 0.92488 0.89791 0.90751 0.90315 0.89449 0.94532 0.91919 0.92509 0.93186 0.91387 0.93656 0.96442 0.96223 0.78012 0.93641 0.84407 0.84189 0.81773 0.82890 0.84237 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 7.62 59.85 0.46 0.98 16 2 N -0.60 -6.92 2.40 -182.68 -0.44 -7.36 16 3 C 0.13 1.67 4.59 -4.04 -0.02 1.65 16 4 C -0.09 -1.39 0.60 -154.51 -0.09 -1.48 16 5 C -0.12 -2.22 7.05 37.16 0.26 -1.96 16 6 C -0.14 -2.09 7.06 37.16 0.26 -1.83 16 7 C 0.17 3.33 5.15 -4.04 -0.02 3.31 16 8 N -0.73 -18.39 5.00 -59.91 -0.30 -18.69 16 9 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 C 0.55 7.28 5.57 -12.31 -0.07 7.21 16 18 O -0.52 -8.70 15.09 5.33 0.08 -8.62 16 19 C -0.09 -1.02 5.24 -104.95 -0.55 -1.57 16 20 C -0.07 -0.74 9.52 -39.55 -0.38 -1.11 16 21 C -0.09 -0.72 9.77 -39.59 -0.39 -1.11 16 22 C -0.10 -0.86 5.75 -106.78 -0.61 -1.47 16 23 C 0.15 1.14 11.04 -16.97 -0.19 0.95 16 24 N -0.49 -4.42 10.29 -13.15 -0.14 -4.56 16 25 C 0.07 0.54 11.07 -17.97 -0.20 0.34 16 26 C -0.15 -1.03 9.88 -39.36 -0.39 -1.42 16 27 C -0.03 -0.27 5.74 -106.82 -0.61 -0.88 16 28 C -0.09 -0.73 7.34 -38.78 -0.28 -1.02 16 29 H 0.06 0.33 6.86 -51.93 -0.36 -0.03 16 30 H 0.08 0.66 6.27 -51.93 -0.33 0.33 16 31 H 0.07 0.56 5.85 -51.93 -0.30 0.26 16 32 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.09 1.28 7.36 -51.92 -0.38 0.90 16 34 H 0.04 0.60 6.22 -51.93 -0.32 0.27 16 35 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 36 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 37 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.07 1.26 6.86 -51.93 -0.36 0.90 16 39 H 0.04 0.59 6.07 -51.93 -0.31 0.28 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.38 10.19 5.36 -40.82 -0.22 9.97 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.14 1.40 8.04 -52.49 -0.42 0.98 16 45 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 46 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 48 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 49 H 0.15 0.94 5.28 -52.48 -0.28 0.66 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -34.57 384.88 -9.32 -43.89 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.96 Total: 6.33 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.07 Total: -6.73 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.15 Total: -58.29 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.57 -9.32 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505843926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.214 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds