Wall clock time and date at job start Wed Apr 1 2020 01:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99805 * 2 1 4 4 C 1.52994 * 109.47206 * 269.99685 * 3 2 1 5 5 C 1.52995 * 109.47749 * 300.00094 * 4 3 2 6 6 C 1.53002 * 109.46781 * 60.00218 * 4 3 2 7 7 C 1.53005 * 109.47310 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47352 * 180.02562 * 7 4 3 9 9 C 1.36938 * 120.00394 * 180.02562 * 8 7 4 10 10 H 1.08002 * 119.99482 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00350 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99849 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99938 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47468 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47147 * 120.00088 * 13 11 9 16 16 H 1.48500 * 109.47296 * 239.99683 * 13 11 9 17 17 C 1.34779 * 120.00496 * 179.97438 * 2 1 3 18 18 O 1.21545 * 120.00720 * 185.12492 * 17 2 1 19 19 C 1.47894 * 119.99568 * 5.12859 * 17 2 1 20 20 C 1.40597 * 119.72840 * 140.14251 * 19 17 2 21 21 C 1.35853 * 120.95130 * 179.72038 * 20 19 17 22 22 C 1.40487 * 119.88473 * 0.27925 * 21 20 19 23 23 C 1.40477 * 121.85557 * 180.02562 * 22 21 20 24 24 N 1.31211 * 119.94635 * 179.97438 * 23 22 21 25 25 C 1.32554 * 122.80487 * 359.97438 * 24 23 22 26 26 C 1.36219 * 121.84527 * 0.02562 * 25 24 23 27 27 C 1.40760 * 118.67599 * 359.95612 * 26 25 24 28 28 C 1.38525 * 119.73210 * 320.42525 * 19 17 2 29 29 H 1.09001 * 109.46854 * 265.11418 * 1 2 3 30 30 H 1.08994 * 109.47209 * 25.11564 * 1 2 3 31 31 H 1.09001 * 109.47063 * 145.12273 * 1 2 3 32 32 H 1.08995 * 109.46985 * 30.00607 * 3 2 1 33 33 H 1.09008 * 109.47087 * 150.00039 * 3 2 1 34 34 H 1.09002 * 109.46835 * 59.99341 * 5 4 3 35 35 H 1.08998 * 109.47831 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47128 * 300.00293 * 5 4 3 37 37 H 1.09002 * 109.47163 * 60.00022 * 6 4 3 38 38 H 1.08999 * 109.47084 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47111 * 299.99614 * 6 4 3 40 40 H 1.09005 * 109.47103 * 300.00876 * 7 4 3 41 41 H 1.09000 * 109.46636 * 60.00277 * 7 4 3 42 42 H 0.97005 * 120.00365 * 0.02562 * 8 7 4 43 43 H 0.96999 * 119.99793 * 179.97438 * 12 11 9 44 44 H 1.07994 * 119.52430 * 359.97438 * 20 19 17 45 45 H 1.08006 * 120.05716 * 180.29871 * 21 20 19 46 46 H 1.08005 * 120.02443 * 359.95610 * 23 22 21 47 47 H 1.08006 * 119.08008 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.66654 * 180.02562 * 26 25 24 49 49 H 1.08006 * 120.36351 * 359.96902 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2794 0.6443 -2.1637 6 6 1.1156 1.8933 -2.1637 7 6 3.2169 3.0358 -1.4425 8 7 3.4606 3.4590 -2.8236 9 6 4.1336 4.6250 -3.0739 10 1 4.4844 5.2329 -2.2529 11 6 4.3641 5.0263 -4.3826 12 7 3.9361 4.2858 -5.3830 13 14 5.2815 6.6172 -4.7239 14 1 5.6539 7.2597 -3.4378 15 1 6.5106 6.3224 -5.5034 16 1 4.4101 7.5341 -5.5018 17 6 2.1390 -1.1672 0.0005 18 8 3.3508 -1.1693 0.0945 19 6 1.4039 -2.4455 -0.1134 20 6 1.9281 -3.4830 -0.9044 21 6 1.2765 -4.6693 -1.0220 22 6 0.0581 -4.8682 -0.3515 23 6 -0.6499 -6.0780 -0.4437 24 7 -1.7846 -6.2234 0.1989 25 6 -2.3124 -5.2669 0.9497 26 6 -1.7053 -4.0574 1.1046 27 6 -0.4830 -3.8259 0.4460 28 6 0.2018 -2.6087 0.5553 29 1 -0.3633 -0.0875 1.0240 30 1 -0.3633 0.9304 -0.4362 31 1 -0.3633 -0.8431 -0.5876 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5139 34 1 2.7344 -0.2998 -2.1637 35 1 3.4607 0.9587 -3.1915 36 1 4.2318 0.5139 -1.6499 37 1 0.5265 2.6530 -1.6498 38 1 1.2972 2.2084 -3.1912 39 1 0.5706 0.9493 -2.1637 40 1 2.6274 3.7953 -0.9287 41 1 4.1693 2.9059 -0.9285 42 1 3.1452 2.9133 -3.5610 43 1 4.0968 4.5663 -6.2975 44 1 2.8641 -3.3362 -1.4226 45 1 1.6947 -5.4582 -1.6297 46 1 -0.2607 -6.8876 -1.0432 47 1 -3.2502 -5.4517 1.4527 48 1 -2.1522 -3.2917 1.7214 49 1 -0.2002 -1.8083 1.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505843926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:39 Heat of formation + Delta-G solvation = 20.357197 kcal Electronic energy + Delta-G solvation = -29509.721315 eV Core-core repulsion = 25629.524819 eV Total energy + Delta-G solvation = -3880.196496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.09249 -41.12199 -38.94784 -37.88251 -36.54912 -35.00889 -33.97003 -32.57753 -31.98515 -30.70227 -28.91779 -28.21836 -27.35288 -27.21894 -25.44670 -24.83606 -24.08501 -23.28162 -21.22164 -19.90663 -19.16059 -19.00136 -18.40343 -18.06974 -17.13204 -17.04407 -16.74669 -16.51256 -15.95287 -15.61110 -15.49335 -15.34648 -15.15081 -14.80939 -14.70218 -14.57933 -14.29119 -14.16270 -13.88552 -13.75798 -13.71933 -13.50984 -13.15878 -12.97532 -12.94699 -12.78630 -12.57378 -12.50317 -12.26179 -12.07397 -12.01225 -11.68479 -11.66148 -11.54068 -11.20840 -10.99698 -10.94579 -10.46793 -10.13989 -9.64545 -9.07316 -8.97191 -7.94757 -5.22351 -0.77649 -0.29320 0.84963 1.45763 1.46717 1.47377 1.57269 1.86917 2.23416 2.56237 3.05608 3.30512 3.38799 3.51220 3.55883 3.77151 3.81808 3.82720 3.89167 3.94220 4.03295 4.07831 4.24633 4.30358 4.33857 4.45273 4.52682 4.55162 4.60487 4.68274 4.74407 4.78190 4.79884 4.87632 4.90335 4.92940 4.96313 5.06622 5.13197 5.15173 5.16748 5.21176 5.27758 5.41943 5.48837 5.50145 5.53738 5.61954 5.74233 6.27978 6.31249 7.00044 7.06529 7.34430 8.11687 8.35100 9.29271 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002139 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.702583 B =13084.783304 C =13276.482410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.597 5.597 3 C 0.134 3.866 4 C -0.076 4.076 5 C -0.111 4.111 6 C -0.127 4.127 7 C 0.163 3.837 8 N -0.739 5.739 9 C -0.241 4.241 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.296 1.296 16 H -0.292 1.292 17 C 0.550 3.450 18 O -0.569 6.569 19 C -0.116 4.116 20 C -0.097 4.097 21 C -0.081 4.081 22 C -0.112 4.112 23 C 0.141 3.859 24 N -0.509 5.509 25 C 0.061 3.939 26 C -0.142 4.142 27 C -0.047 4.047 28 C -0.070 4.070 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.010 0.990 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.124 0.876 45 H 0.165 0.835 46 H 0.188 0.812 47 H 0.176 0.824 48 H 0.171 0.829 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.314 -20.001 15.875 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.328 5.328 3 C 0.011 3.989 4 C -0.078 4.078 5 C -0.168 4.168 6 C -0.184 4.184 7 C 0.036 3.964 8 N -0.383 5.383 9 C -0.373 4.373 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.340 3.660 18 O -0.448 6.448 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.114 4.114 23 C -0.031 4.031 24 N -0.217 5.217 25 C -0.081 4.081 26 C -0.161 4.161 27 C -0.052 4.052 28 C -0.088 4.088 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.142 0.858 45 H 0.182 0.818 46 H 0.205 0.795 47 H 0.193 0.807 48 H 0.188 0.812 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.189 -20.549 16.044 30.688 hybrid contribution 1.426 1.577 -0.996 2.348 sum -14.763 -18.972 15.048 28.360 Atomic orbital electron populations 1.22600 0.77330 1.05056 1.03565 1.47716 1.08344 1.04901 1.71801 1.21434 0.97957 0.84755 0.94769 1.21002 0.96138 0.94305 0.96318 1.21559 0.98862 0.97369 0.99044 1.21796 0.95400 1.01597 0.99596 1.20742 0.95997 0.93436 0.86272 1.42586 1.67836 1.25075 1.02780 1.19688 1.26820 0.98779 0.91986 0.90706 1.25553 1.03444 1.02457 0.95551 1.69827 1.53474 1.40679 0.98190 0.85069 0.77486 0.79368 0.77817 1.19038 1.22343 1.21883 1.18699 0.86779 0.84510 0.76060 1.90799 1.15409 1.87661 1.50971 1.19962 0.96305 0.94288 1.01458 1.20927 1.00078 0.92785 0.97785 1.21137 0.93163 0.97433 0.98292 1.19379 0.96935 0.96064 0.99001 1.23646 0.89419 0.95294 0.94698 1.67440 1.12448 1.33997 1.07838 1.22659 1.00536 0.89257 0.95654 1.22262 0.94103 0.99790 0.99960 1.18370 0.95935 0.93752 0.97134 1.21976 0.92024 0.97187 0.97596 0.89210 0.89081 0.90088 0.87246 0.91198 0.93384 0.95063 0.94469 0.91374 0.95040 0.91208 0.95044 0.97193 0.79096 0.94099 0.85798 0.81770 0.79518 0.80660 0.81184 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 7.62 127.77 0.97 1.66 16 2 N -0.60 -12.68 2.40 -850.15 -2.04 -14.72 16 3 C 0.13 3.38 4.59 86.38 0.40 3.77 16 4 C -0.08 -2.46 0.60 -52.18 -0.03 -2.49 16 5 C -0.11 -4.13 7.05 71.98 0.51 -3.62 16 6 C -0.13 -3.75 7.06 71.98 0.51 -3.24 16 7 C 0.16 6.59 5.15 86.38 0.44 7.03 16 8 N -0.74 -38.22 5.00 -343.46 -1.72 -39.94 16 9 C -0.24 -13.70 9.99 84.03 0.84 -12.87 16 10 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 12 N -0.97 -60.50 13.06 21.65 0.28 -60.21 16 13 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 17 C 0.55 14.29 5.57 86.80 0.48 14.78 16 18 O -0.57 -19.77 15.09 -3.86 -0.06 -19.83 16 19 C -0.12 -2.39 5.24 -20.08 -0.11 -2.49 16 20 C -0.10 -1.96 9.52 22.29 0.21 -1.75 16 21 C -0.08 -1.22 9.77 22.26 0.22 -1.00 16 22 C -0.11 -1.71 5.75 -21.26 -0.12 -1.83 16 23 C 0.14 1.94 11.04 85.33 0.94 2.88 16 24 N -0.51 -8.19 10.29 -195.51 -2.01 -10.20 16 25 C 0.06 0.75 11.07 84.11 0.93 1.68 16 26 C -0.14 -1.49 9.88 22.42 0.22 -1.26 16 27 C -0.05 -0.68 5.74 -21.29 -0.12 -0.80 16 28 C -0.07 -1.01 7.34 22.79 0.17 -0.84 16 29 H 0.09 0.57 6.86 -2.39 -0.02 0.56 16 30 H 0.09 1.04 6.27 -2.39 -0.01 1.03 16 31 H 0.08 0.94 5.85 -2.39 -0.01 0.93 16 32 H 0.11 2.11 8.07 -2.39 -0.02 2.10 16 33 H 0.07 2.05 7.36 -2.38 -0.02 2.03 16 34 H 0.05 1.64 6.22 -2.39 -0.01 1.63 16 35 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 36 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 37 H 0.07 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 39 H 0.07 1.70 6.07 -2.39 -0.01 1.69 16 40 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.38 20.69 5.36 -92.70 -0.50 20.20 16 43 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.12 2.74 8.04 -2.91 -0.02 2.72 16 45 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 47 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 48 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 49 H 0.17 1.49 5.28 -2.91 -0.02 1.48 16 Total: -1.00 -77.89 384.88 3.89 -74.00 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.48 Total: 26.37 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 6.93 Total: -4.51 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.49 Total: -125.07 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.06 Total: -19.83 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.89 3.89 -74.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505843926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.356 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds