Wall clock time and date at job start Wed Apr 1 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47148 * 2 1 4 4 H 1.09001 * 109.47549 * 305.00011 * 3 2 1 5 5 F 1.39903 * 109.47052 * 65.00266 * 3 2 1 6 6 C 1.50706 * 109.47162 * 185.00276 * 3 2 1 7 7 O 1.21282 * 119.99983 * 314.99872 * 6 3 2 8 8 N 1.34774 * 120.00179 * 134.99997 * 6 3 2 9 9 C 1.47174 * 135.99314 * 359.63676 * 8 6 3 10 10 C 1.53192 * 87.73716 * 153.41460 * 9 8 6 11 11 C 1.47176 * 135.99524 * 179.97438 * 8 6 3 12 12 C 1.52603 * 114.02318 * 139.58041 * 10 9 8 13 13 C 1.53326 * 108.89003 * 186.63748 * 12 10 9 14 14 C 1.53032 * 109.17193 * 304.75653 * 13 12 10 15 15 N 1.46817 * 109.79015 * 61.06037 * 14 13 12 16 16 C 1.46897 * 110.99959 * 172.35829 * 15 14 13 17 17 C 1.50705 * 109.47123 * 190.51954 * 16 15 14 18 18 O 1.21301 * 119.99795 * 6.26736 * 17 16 15 19 19 N 1.34775 * 120.00226 * 186.27181 * 17 16 15 20 20 C 1.37094 * 120.00060 * 179.97438 * 19 17 16 21 21 H 1.08005 * 120.00122 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99981 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99925 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00113 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47047 * 90.00002 * 24 22 20 26 26 H 1.48496 * 109.47389 * 209.99709 * 24 22 20 27 27 H 1.48501 * 109.46966 * 330.00062 * 24 22 20 28 28 C 1.47049 * 111.15013 * 296.42131 * 15 14 13 29 29 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47289 * 59.99896 * 1 2 3 31 31 H 1.09008 * 109.46778 * 299.99773 * 1 2 3 32 32 H 1.09004 * 109.47124 * 120.00573 * 2 1 3 33 33 H 1.09003 * 109.47183 * 239.99969 * 2 1 3 34 34 H 1.09000 * 113.48789 * 268.10498 * 9 8 6 35 35 H 1.08996 * 113.49053 * 38.61589 * 9 8 6 36 36 H 1.08993 * 113.49185 * 321.38101 * 11 8 6 37 37 H 1.08995 * 113.48882 * 91.89457 * 11 8 6 38 38 H 1.08999 * 109.56988 * 306.45623 * 12 10 9 39 39 H 1.08999 * 109.57137 * 66.82236 * 12 10 9 40 40 H 1.09000 * 109.52489 * 184.84707 * 13 12 10 41 41 H 1.09001 * 109.52170 * 64.66100 * 13 12 10 42 42 H 1.09007 * 109.41705 * 300.96433 * 14 13 12 43 43 H 1.09002 * 109.36571 * 181.12661 * 14 13 12 44 44 H 1.09003 * 109.47327 * 310.51336 * 16 15 14 45 45 H 1.08997 * 109.47441 * 70.52018 * 16 15 14 46 46 H 0.96996 * 119.99833 * 0.02562 * 19 17 16 47 47 H 0.97002 * 119.99996 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49892 * 299.15942 * 28 15 14 49 49 H 1.09004 * 109.52687 * 179.07750 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0679 1.1955 6 6 3.5419 1.4442 -0.1239 7 8 4.2064 0.6810 0.5445 8 7 4.1467 2.2940 -0.9775 9 6 3.7095 3.3278 -1.9294 10 6 5.0691 4.0038 -1.7261 11 6 5.5335 2.5910 -1.3708 12 6 5.6847 4.5589 -3.0073 13 6 7.1029 5.0554 -2.7021 14 6 7.0450 6.0682 -1.5563 15 7 6.5045 5.4258 -0.3518 16 6 6.6048 6.3181 0.8108 17 6 6.2862 5.5463 2.0654 18 8 6.1152 4.3466 2.0123 19 7 6.1913 6.1890 3.2462 20 6 5.9010 5.4869 4.3874 21 1 5.7480 4.4188 4.3401 22 6 5.8037 6.1494 5.6048 23 7 5.5250 5.4765 6.6986 24 14 6.0691 7.9966 5.6868 25 1 4.7724 8.6923 5.4870 26 1 6.6253 8.3583 7.0153 27 1 7.0205 8.4076 4.6232 28 6 5.1165 4.9877 -0.5617 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.5587 2.9509 -2.9410 35 1 2.8691 3.9217 -1.5703 36 1 6.2369 2.5612 -0.5388 37 1 5.8734 2.0159 -2.2320 38 1 5.7275 3.7735 -3.7619 39 1 5.0790 5.3875 -3.3743 40 1 7.5207 5.5321 -3.5888 41 1 7.7294 4.2121 -2.4114 42 1 6.4030 6.9018 -1.8415 43 1 8.0493 6.4383 -1.3499 44 1 7.6172 6.7166 0.8767 45 1 5.8973 7.1398 0.7003 46 1 6.3277 7.1484 3.2885 47 1 5.4574 5.9389 7.5486 48 1 4.4927 5.8519 -0.7898 49 1 4.7477 4.5009 0.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506867557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:26 Heat of formation + Delta-G solvation = -72.408986 kcal Electronic energy + Delta-G solvation = -31456.706480 eV Core-core repulsion = 27141.718116 eV Total energy + Delta-G solvation = -4314.988364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.78020 -41.09146 -38.90014 -38.11974 -36.62821 -34.07242 -33.96232 -32.96693 -31.58701 -30.73566 -28.28805 -27.76191 -26.22435 -25.80139 -24.65529 -22.96775 -22.14751 -21.41609 -19.51391 -19.28914 -18.44278 -18.22532 -17.54460 -16.72819 -16.10803 -16.04992 -15.79240 -15.33000 -15.24966 -14.86154 -14.82576 -14.36877 -14.10944 -13.95338 -13.75443 -13.50259 -13.20041 -13.16612 -12.93662 -12.81603 -12.65039 -12.52767 -12.33946 -12.18887 -11.99669 -11.91892 -11.77427 -11.42733 -11.26043 -11.10055 -11.08773 -10.98019 -10.69542 -10.55552 -10.50494 -10.26492 -9.90528 -9.55662 -9.46237 -8.68823 -8.51538 -8.11304 -7.95074 -6.23763 -3.74996 2.55013 2.68389 3.05929 3.09929 3.18227 3.73239 3.80532 4.07639 4.15250 4.25178 4.35858 4.51501 4.57384 4.73670 4.76617 4.85507 4.92290 5.00194 5.12822 5.17212 5.22363 5.26713 5.27679 5.29378 5.46903 5.48978 5.51909 5.54706 5.64333 5.67881 5.71227 5.73410 5.77370 5.83240 5.86715 5.95567 5.98382 6.01827 6.02687 6.14210 6.20951 6.44258 7.14903 7.30083 7.65172 7.69632 8.11173 8.22853 8.67369 9.03341 9.49720 9.91093 10.89576 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.004116 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.760525 B = 6801.732458 C = 9417.374081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.090 3.910 4 H 0.093 0.907 5 F -0.184 7.184 6 C 0.521 3.479 7 O -0.511 6.511 8 N -0.637 5.637 9 C 0.103 3.897 10 C -0.086 4.086 11 C 0.120 3.880 12 C -0.101 4.101 13 C -0.114 4.114 14 C 0.054 3.946 15 N -0.512 5.512 16 C 0.045 3.955 17 C 0.449 3.551 18 O -0.551 6.551 19 N -0.593 5.593 20 C -0.302 4.302 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.080 3.920 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.369 0.631 47 H 0.272 0.728 48 H 0.030 0.970 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 0.138 -24.223 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.050 3.950 4 H 0.111 0.889 5 F -0.165 7.165 6 C 0.308 3.692 7 O -0.385 6.385 8 N -0.373 5.373 9 C -0.021 4.021 10 C -0.087 4.087 11 C -0.002 4.002 12 C -0.139 4.139 13 C -0.151 4.151 14 C -0.075 4.075 15 N -0.236 5.236 16 C -0.087 4.087 17 C 0.234 3.766 18 O -0.432 6.432 19 N -0.233 5.233 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.048 4.048 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.201 0.799 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.726 -1.678 -23.343 23.875 hybrid contribution -0.305 2.400 0.194 2.427 sum -5.031 0.722 -23.148 23.700 Atomic orbital electron populations 1.21769 0.94155 1.02510 1.02523 1.21996 0.97214 0.93693 1.04994 1.21530 0.91808 0.95962 0.85656 0.88899 1.92935 1.91857 1.83793 1.47917 1.20451 0.89792 0.79428 0.79555 1.90767 1.65924 1.38708 1.43068 1.49553 1.10767 1.37501 1.39451 1.23189 0.98182 0.87529 0.93212 1.21806 0.95320 0.95202 0.96393 1.22960 0.85146 0.91685 1.00375 1.21430 0.96631 1.00648 0.95226 1.21573 0.96702 0.99666 0.97203 1.22110 0.99860 0.95138 0.90350 1.61448 1.20185 1.39611 1.02398 1.21888 1.02021 0.93835 0.90912 1.19682 0.84369 0.88609 0.83947 1.90603 1.52896 1.14161 1.85495 1.42215 1.64647 1.08807 1.07591 1.19439 1.44552 0.95947 0.83112 0.86280 1.25028 0.97750 0.98268 0.95130 1.69631 1.47894 1.35890 0.98798 0.86687 0.78779 0.85572 0.78416 1.19747 1.20233 1.19538 1.21845 0.88546 0.95981 0.98390 0.91754 0.92520 0.91718 0.89231 0.90045 0.89205 0.90304 0.88392 0.90271 0.91290 0.91502 0.91429 0.90722 0.95217 0.90768 0.89026 0.93591 0.79874 0.91701 0.95182 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.83 37.16 0.37 -0.98 16 2 C -0.14 -1.59 5.41 -26.74 -0.14 -1.73 16 3 C 0.09 1.21 3.72 -27.88 -0.10 1.11 16 4 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 5 F -0.18 -3.17 16.75 2.25 0.04 -3.13 16 6 C 0.52 8.85 7.42 -10.98 -0.08 8.77 16 7 O -0.51 -11.08 17.38 5.56 0.10 -10.99 16 8 N -0.64 -9.12 3.47 -184.92 -0.64 -9.76 16 9 C 0.10 1.00 7.20 -8.03 -0.06 0.94 16 10 C -0.09 -0.97 0.94 -154.91 -0.15 -1.12 16 11 C 0.12 1.64 7.70 -8.17 -0.06 1.57 16 12 C -0.10 -0.81 5.23 -26.77 -0.14 -0.95 16 13 C -0.11 -1.00 6.08 -26.55 -0.16 -1.16 16 14 C 0.05 0.58 5.40 -3.85 -0.02 0.56 16 15 N -0.51 -7.78 4.36 -236.30 -1.03 -8.81 16 16 C 0.04 0.75 5.45 -4.98 -0.03 0.72 16 17 C 0.45 10.37 7.34 -10.98 -0.08 10.29 16 18 O -0.55 -15.13 14.26 5.54 0.08 -15.05 16 19 N -0.59 -14.47 5.09 -10.96 -0.06 -14.53 16 20 C -0.30 -8.82 10.16 -14.94 -0.15 -8.97 16 21 H 0.12 4.03 7.39 -52.48 -0.39 3.64 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -26.63 13.96 55.50 0.77 -25.85 16 24 Si 0.88 19.84 27.73 -169.99 -4.71 15.13 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 28 C 0.08 1.19 4.30 -3.99 -0.02 1.18 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.64 7.94 -51.92 -0.41 0.23 16 32 H 0.09 1.18 8.05 -51.93 -0.42 0.77 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.10 1.77 8.11 -51.93 -0.42 1.35 16 37 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 38 H 0.07 0.44 8.02 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 44 H 0.09 1.34 7.95 -51.93 -0.41 0.93 16 45 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 46 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 2.09 5.90 -51.93 -0.31 1.78 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -37.60 395.87 -8.46 -46.06 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.05 Total: 9.68 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -0.93 Total: 11.28 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.95 Total: -58.94 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: 0.18 Total: -26.04 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.71 Total: 15.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.60 -8.46 -46.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506867557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.348 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds