Wall clock time and date at job start Wed Apr 1 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47148 * 2 1 4 4 H 1.09001 * 109.47549 * 305.00011 * 3 2 1 5 5 F 1.39903 * 109.47052 * 65.00266 * 3 2 1 6 6 C 1.50706 * 109.47162 * 185.00276 * 3 2 1 7 7 O 1.21282 * 119.99983 * 314.99872 * 6 3 2 8 8 N 1.34774 * 120.00179 * 134.99997 * 6 3 2 9 9 C 1.47174 * 135.99314 * 359.63676 * 8 6 3 10 10 C 1.53192 * 87.73716 * 153.41460 * 9 8 6 11 11 C 1.47176 * 135.99524 * 179.97438 * 8 6 3 12 12 C 1.52603 * 114.02318 * 139.58041 * 10 9 8 13 13 C 1.53326 * 108.89003 * 186.63748 * 12 10 9 14 14 C 1.53032 * 109.17193 * 304.75653 * 13 12 10 15 15 N 1.46817 * 109.79015 * 61.06037 * 14 13 12 16 16 C 1.46897 * 110.99959 * 172.35829 * 15 14 13 17 17 C 1.50705 * 109.47123 * 190.51954 * 16 15 14 18 18 O 1.21301 * 119.99795 * 6.26736 * 17 16 15 19 19 N 1.34775 * 120.00226 * 186.27181 * 17 16 15 20 20 C 1.37094 * 120.00060 * 179.97438 * 19 17 16 21 21 H 1.08005 * 120.00122 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99981 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99925 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00113 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47047 * 90.00002 * 24 22 20 26 26 H 1.48496 * 109.47389 * 209.99709 * 24 22 20 27 27 H 1.48501 * 109.46966 * 330.00062 * 24 22 20 28 28 C 1.47049 * 111.15013 * 296.42131 * 15 14 13 29 29 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47289 * 59.99896 * 1 2 3 31 31 H 1.09008 * 109.46778 * 299.99773 * 1 2 3 32 32 H 1.09004 * 109.47124 * 120.00573 * 2 1 3 33 33 H 1.09003 * 109.47183 * 239.99969 * 2 1 3 34 34 H 1.09000 * 113.48789 * 268.10498 * 9 8 6 35 35 H 1.08996 * 113.49053 * 38.61589 * 9 8 6 36 36 H 1.08993 * 113.49185 * 321.38101 * 11 8 6 37 37 H 1.08995 * 113.48882 * 91.89457 * 11 8 6 38 38 H 1.08999 * 109.56988 * 306.45623 * 12 10 9 39 39 H 1.08999 * 109.57137 * 66.82236 * 12 10 9 40 40 H 1.09000 * 109.52489 * 184.84707 * 13 12 10 41 41 H 1.09001 * 109.52170 * 64.66100 * 13 12 10 42 42 H 1.09007 * 109.41705 * 300.96433 * 14 13 12 43 43 H 1.09002 * 109.36571 * 181.12661 * 14 13 12 44 44 H 1.09003 * 109.47327 * 310.51336 * 16 15 14 45 45 H 1.08997 * 109.47441 * 70.52018 * 16 15 14 46 46 H 0.96996 * 119.99833 * 0.02562 * 19 17 16 47 47 H 0.97002 * 119.99996 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49892 * 299.15942 * 28 15 14 49 49 H 1.09004 * 109.52687 * 179.07750 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0679 1.1955 6 6 3.5419 1.4442 -0.1239 7 8 4.2064 0.6810 0.5445 8 7 4.1467 2.2940 -0.9775 9 6 3.7095 3.3278 -1.9294 10 6 5.0691 4.0038 -1.7261 11 6 5.5335 2.5910 -1.3708 12 6 5.6847 4.5589 -3.0073 13 6 7.1029 5.0554 -2.7021 14 6 7.0450 6.0682 -1.5563 15 7 6.5045 5.4258 -0.3518 16 6 6.6048 6.3181 0.8108 17 6 6.2862 5.5463 2.0654 18 8 6.1152 4.3466 2.0123 19 7 6.1913 6.1890 3.2462 20 6 5.9010 5.4869 4.3874 21 1 5.7480 4.4188 4.3401 22 6 5.8037 6.1494 5.6048 23 7 5.5250 5.4765 6.6986 24 14 6.0691 7.9966 5.6868 25 1 4.7724 8.6923 5.4870 26 1 6.6253 8.3583 7.0153 27 1 7.0205 8.4076 4.6232 28 6 5.1165 4.9877 -0.5617 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.5587 2.9509 -2.9410 35 1 2.8691 3.9217 -1.5703 36 1 6.2369 2.5612 -0.5388 37 1 5.8734 2.0159 -2.2320 38 1 5.7275 3.7735 -3.7619 39 1 5.0790 5.3875 -3.3743 40 1 7.5207 5.5321 -3.5888 41 1 7.7294 4.2121 -2.4114 42 1 6.4030 6.9018 -1.8415 43 1 8.0493 6.4383 -1.3499 44 1 7.6172 6.7166 0.8767 45 1 5.8973 7.1398 0.7003 46 1 6.3277 7.1484 3.2885 47 1 5.4574 5.9389 7.5486 48 1 4.4927 5.8519 -0.7898 49 1 4.7477 4.5009 0.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506867557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:25 Heat of formation + Delta-G solvation = -102.981923 kcal Electronic energy + Delta-G solvation = -31458.032222 eV Core-core repulsion = 27141.718116 eV Total energy + Delta-G solvation = -4316.314106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.05332 -42.13217 -40.46703 -39.65017 -37.86034 -36.00603 -35.03485 -34.06123 -33.72649 -31.76652 -29.46114 -29.06385 -27.16291 -26.82621 -26.40672 -24.16298 -23.09762 -22.36162 -21.28123 -20.62386 -20.22888 -19.37573 -18.66371 -17.92272 -17.74288 -17.27966 -17.01430 -16.75324 -16.45341 -16.33651 -16.09704 -15.51011 -15.37036 -15.24724 -15.05388 -14.91836 -14.63098 -14.38100 -14.23933 -13.96276 -13.88271 -13.65578 -13.60871 -13.32794 -13.19391 -13.04701 -12.92548 -12.86925 -12.52722 -12.44407 -12.10531 -12.00689 -11.97804 -11.88804 -11.59969 -11.50991 -11.40111 -11.15544 -10.76697 -10.36033 -10.25174 -9.83330 -9.13685 -8.43585 -6.05174 1.24913 1.25906 1.32949 1.41926 1.60696 1.96015 2.20659 2.59086 3.03055 3.04727 3.12133 3.37646 3.44442 3.55820 3.72948 3.80890 3.87075 4.08654 4.14723 4.24550 4.26586 4.31241 4.38392 4.41031 4.43245 4.48031 4.49136 4.63257 4.65901 4.71899 4.75820 4.81050 4.86596 4.93525 4.95181 5.05227 5.08472 5.16499 5.20772 5.27975 5.41972 5.51088 5.55401 5.89191 6.04385 6.31258 6.56816 6.58236 6.84647 6.87266 7.38215 7.98775 8.75180 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.004116 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.760525 B = 6801.732458 C = 9417.374081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.088 3.912 4 H 0.142 0.858 5 F -0.212 7.212 6 C 0.503 3.497 7 O -0.583 6.583 8 N -0.643 5.643 9 C 0.110 3.890 10 C -0.076 4.076 11 C 0.112 3.888 12 C -0.091 4.091 13 C -0.113 4.113 14 C 0.052 3.948 15 N -0.540 5.540 16 C 0.058 3.942 17 C 0.445 3.555 18 O -0.605 6.605 19 N -0.594 5.594 20 C -0.328 4.328 21 H 0.043 0.957 22 C -0.018 4.018 23 N -0.939 5.939 24 Si 0.971 3.029 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.229 1.229 28 C 0.081 3.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.050 0.950 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 4.377 -29.385 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.049 3.951 4 H 0.159 0.841 5 F -0.193 7.193 6 C 0.291 3.709 7 O -0.463 6.463 8 N -0.376 5.376 9 C -0.011 4.011 10 C -0.077 4.077 11 C -0.010 4.010 12 C -0.128 4.128 13 C -0.151 4.151 14 C -0.075 4.075 15 N -0.265 5.265 16 C -0.073 4.073 17 C 0.233 3.767 18 O -0.488 6.488 19 N -0.236 5.236 20 C -0.457 4.457 21 H 0.062 0.938 22 C -0.216 4.216 23 N -0.580 5.580 24 Si 0.790 3.210 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.152 1.152 28 C -0.047 4.047 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.160 0.840 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.138 0.862 45 H 0.096 0.904 46 H 0.225 0.775 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.174 2.614 -28.588 29.170 hybrid contribution -0.099 0.955 1.776 2.019 sum -5.274 3.570 -26.812 27.557 Atomic orbital electron populations 1.21758 0.91795 1.03722 1.03037 1.22013 0.99069 0.92107 1.04404 1.21920 0.89540 0.97857 0.85781 0.84053 1.92872 1.91865 1.84451 1.50091 1.21258 0.91348 0.79042 0.79243 1.90713 1.67683 1.41936 1.45983 1.49835 1.11716 1.36908 1.39189 1.23587 0.97548 0.85662 0.94342 1.21751 0.96428 0.92693 0.96858 1.23138 0.83959 0.94756 0.99175 1.21463 0.95895 1.02244 0.93241 1.21620 0.97265 0.98731 0.97482 1.22275 1.00247 0.96144 0.88831 1.61382 1.20620 1.40647 1.03818 1.21800 1.04243 0.93446 0.87825 1.21136 0.81506 0.88476 0.85572 1.90605 1.54315 1.17297 1.86610 1.42023 1.65446 1.09514 1.06634 1.18926 1.47259 0.93438 0.86111 0.93843 1.26205 0.96113 1.05828 0.93489 1.69837 1.48882 1.39348 0.99920 0.85289 0.80228 0.75721 0.79730 1.17982 1.19838 1.15200 1.21688 0.88777 0.97059 0.97182 0.90239 0.89812 0.93307 0.92582 0.87996 0.84008 0.89227 0.94608 0.86842 0.88471 0.88841 0.88126 0.92732 0.93032 0.90082 0.86192 0.90433 0.77507 0.91144 0.93192 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.83 71.98 0.71 -1.74 16 2 C -0.14 -3.21 5.41 30.59 0.17 -3.05 16 3 C 0.09 2.45 3.72 29.85 0.11 2.56 16 4 H 0.14 2.47 7.58 -2.39 -0.02 2.46 16 5 F -0.21 -7.87 16.75 44.97 0.75 -7.11 16 6 C 0.50 18.44 7.42 87.66 0.65 19.09 16 7 O -0.58 -28.44 17.38 -3.03 -0.05 -28.49 16 8 N -0.64 -18.82 3.47 -857.35 -2.97 -21.79 16 9 C 0.11 1.78 7.20 83.43 0.60 2.38 16 10 C -0.08 -1.55 0.94 -52.44 -0.05 -1.60 16 11 C 0.11 3.12 7.70 83.34 0.64 3.76 16 12 C -0.09 -0.97 5.23 30.57 0.16 -0.81 16 13 C -0.11 -1.51 6.08 30.71 0.19 -1.32 16 14 C 0.05 0.92 5.40 86.33 0.47 1.39 16 15 N -0.54 -15.80 4.36 -901.51 -3.93 -19.73 16 16 C 0.06 1.84 5.45 85.56 0.47 2.31 16 17 C 0.45 21.53 7.34 87.66 0.64 22.17 16 18 O -0.60 -36.55 14.26 -3.09 -0.04 -36.59 16 19 N -0.59 -29.86 5.09 -306.97 -1.56 -31.43 16 20 C -0.33 -20.63 10.16 84.04 0.85 -19.78 16 21 H 0.04 3.31 7.39 -2.91 -0.02 3.29 16 22 C -0.02 -1.08 5.50 84.93 0.47 -0.62 16 23 N -0.94 -60.03 13.96 21.66 0.30 -59.72 16 24 Si 0.97 40.66 27.73 68.60 1.90 42.56 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.23 -8.00 6.52 99.48 0.65 -7.36 16 28 C 0.08 2.37 4.30 86.11 0.37 2.74 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.97 7.94 -2.38 -0.02 0.95 16 32 H 0.06 1.66 8.05 -2.38 -0.02 1.65 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.14 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 36 H 0.04 1.44 8.11 -2.39 -0.02 1.42 16 37 H 0.11 2.32 8.01 -2.39 -0.02 2.30 16 38 H 0.10 0.60 8.02 -2.39 -0.02 0.58 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.08 1.34 7.97 -2.39 -0.02 1.32 16 44 H 0.12 3.15 7.95 -2.39 -0.02 3.13 16 45 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 46 H 0.39 16.06 5.76 -92.71 -0.53 15.53 16 47 H 0.28 16.21 8.31 -92.71 -0.77 15.44 16 48 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.04 1.66 5.90 -2.39 -0.01 1.65 16 Total: -1.00 -101.20 395.87 1.20 -100.00 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.36 Total: 34.80 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 6.44 Total: 27.50 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -8.16 Total: -132.67 kcal Atomic # 8 Polarization: -64.99 SS G_CDS: -0.10 Total: -65.08 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.75 Total: -7.11 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.90 Total: 42.56 kcal Total: -101.20 1.20 -100.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506867557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.977 kcal (2) G-P(sol) polarization free energy of solvation -101.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds