Wall clock time and date at job start Wed Apr 1 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34482 * 126.83497 * 2 1 4 4 N 1.36444 * 108.85509 * 180.25124 * 3 2 1 5 5 H 0.97007 * 124.85212 * 179.72565 * 4 3 2 6 6 C 1.34660 * 110.30152 * 359.75324 * 4 3 2 7 7 C 1.36773 * 108.39203 * 359.97438 * 6 4 3 8 8 C 1.47269 * 126.94071 * 179.97438 * 7 6 4 9 9 O 1.21620 * 119.99945 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99688 * 0.03384 * 8 7 6 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47563 * 305.00337 * 13 12 11 15 15 C 1.52997 * 109.47448 * 184.99813 * 13 12 11 16 16 C 1.50710 * 109.47272 * 175.00070 * 15 13 12 17 17 C 1.38230 * 119.99609 * 269.73021 * 16 15 13 18 18 C 1.38244 * 119.99582 * 179.76611 * 17 16 15 19 19 C 1.38227 * 119.99833 * 0.50546 * 18 17 16 20 20 C 1.38235 * 120.00103 * 359.74560 * 19 18 17 21 21 C 1.38227 * 119.99944 * 90.00180 * 16 15 13 22 22 N 1.46502 * 109.47005 * 64.99872 * 13 12 11 23 23 C 1.36935 * 119.99867 * 60.00333 * 22 13 12 24 24 H 1.08002 * 119.99885 * 359.97438 * 23 22 13 25 25 C 1.38821 * 120.00154 * 179.97438 * 23 22 13 26 26 N 1.31616 * 119.99703 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99972 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47219 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46976 * 120.00120 * 27 25 23 30 30 H 1.48505 * 109.46994 * 240.00257 * 27 25 23 31 31 H 1.08998 * 109.46780 * 270.15010 * 1 2 3 32 32 H 1.09001 * 109.46787 * 30.14536 * 1 2 3 33 33 H 1.08993 * 109.47442 * 150.14683 * 1 2 3 34 34 H 1.08001 * 125.57542 * 0.04326 * 3 2 1 35 35 H 1.08002 * 125.80597 * 180.02562 * 6 4 3 36 36 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 38 38 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 39 39 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 40 40 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 41 41 H 1.09001 * 109.47310 * 295.00266 * 15 13 12 42 42 H 1.09002 * 109.47223 * 55.00225 * 15 13 12 43 43 H 1.07999 * 120.00647 * 359.97438 * 17 16 15 44 44 H 1.08001 * 120.00260 * 180.23019 * 18 17 16 45 45 H 1.08000 * 119.99978 * 179.72601 * 19 18 17 46 46 H 1.08008 * 120.00079 * 179.97438 * 20 19 18 47 47 H 1.07999 * 120.00170 * 0.02562 * 21 16 15 48 48 H 0.97001 * 120.00001 * 240.00170 * 22 13 12 49 49 H 0.96996 * 119.99803 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3841 1.2413 -0.0106 6 6 3.6657 -0.6903 -0.0040 7 6 2.3864 -1.1741 0.0035 8 6 1.9748 -2.5881 0.0073 9 8 0.7936 -2.8777 0.0135 10 7 2.9072 -3.5612 0.0039 11 6 2.4979 -4.9679 0.0082 12 6 3.7403 -5.8607 0.0025 13 6 3.3129 -7.3297 0.0076 14 1 2.6503 -7.5124 0.8536 15 6 4.5508 -8.2207 0.1276 16 6 4.1232 -9.6601 0.2562 17 6 3.9005 -10.2058 1.5065 18 6 3.5036 -11.5248 1.6242 19 6 3.3396 -12.3008 0.4922 20 6 3.5673 -11.7565 -0.7579 21 6 3.9592 -10.4361 -0.8759 22 7 2.6086 -7.6377 -1.2395 23 6 3.2455 -7.4827 -2.4418 24 1 4.2670 -7.1330 -2.4706 25 6 2.5784 -7.7750 -3.6235 26 7 1.3334 -8.2006 -3.5884 27 14 3.4471 -7.5629 -5.2636 28 1 4.8303 -7.0751 -5.0316 29 1 3.4950 -8.8678 -5.9707 30 1 2.7067 -6.5777 -6.0921 31 1 -0.3633 0.0027 1.0277 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8912 -0.5115 34 1 1.9869 2.1059 0.0007 35 1 4.5664 -1.2862 -0.0070 36 1 3.8493 -3.3304 -0.0013 37 1 1.9076 -5.1718 0.9016 38 1 1.8983 -5.1746 -0.8783 39 1 4.3302 -5.6567 -0.8911 40 1 4.3403 -5.6542 0.8888 41 1 5.1703 -8.1037 -0.7616 42 1 5.1226 -7.9314 1.0093 43 1 4.0334 -9.6009 2.3913 44 1 3.3260 -11.9502 2.6009 45 1 3.0338 -13.3325 0.5844 46 1 3.4395 -12.3630 -1.6425 47 1 4.1378 -10.0111 -1.8525 48 1 1.6910 -7.9514 -1.2136 49 1 0.8674 -8.4053 -4.4141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507390607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:21 Heat of formation + Delta-G solvation = 32.220649 kcal Electronic energy + Delta-G solvation = -28848.624678 eV Core-core repulsion = 24968.942620 eV Total energy + Delta-G solvation = -3879.682058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.21604 -38.90540 -38.62559 -36.46272 -34.24111 -32.44619 -32.42598 -31.20059 -30.28327 -30.06338 -28.71553 -26.88440 -26.56601 -24.19397 -23.51151 -22.06840 -21.93991 -20.68138 -19.97892 -19.55488 -18.93941 -18.38092 -17.09787 -16.15624 -16.00547 -15.39431 -15.22043 -14.94602 -14.55301 -14.38269 -14.24350 -14.01897 -13.71503 -13.47838 -13.18970 -13.16176 -12.84270 -12.78548 -12.67589 -12.62584 -12.33024 -12.31331 -11.61012 -11.43516 -11.35190 -11.27785 -10.93236 -10.86916 -10.67366 -10.43564 -10.33181 -10.28862 -9.74728 -9.57246 -9.45362 -8.90537 -8.76270 -8.44952 -8.35536 -8.31628 -8.04010 -6.91385 -5.72863 -3.01140 1.79208 1.94674 2.03005 2.35804 3.07946 3.42875 3.47643 3.51669 3.66280 3.84124 4.39834 4.60957 4.74056 4.94452 5.07376 5.35081 5.35649 5.37990 5.47143 5.50507 5.56392 5.59696 5.65255 5.75371 5.76783 5.89633 5.90052 6.04384 6.07535 6.10129 6.17655 6.21722 6.28783 6.30313 6.44353 6.47857 6.60425 6.71094 6.73809 6.79267 6.82314 6.87032 6.96806 6.98835 7.02214 7.16547 7.30736 7.40174 7.65602 7.71898 7.97379 8.44011 8.71977 9.56149 10.14116 10.48995 11.49101 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.002727 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.306689 B =10266.381835 C =11684.820417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.031 4.031 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.042 3.958 7 C -0.220 4.220 8 C 0.582 3.418 9 O -0.542 6.542 10 N -0.726 5.726 11 C 0.129 3.871 12 C -0.138 4.138 13 C 0.186 3.814 14 H 0.055 0.945 15 C -0.094 4.094 16 C -0.057 4.057 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.137 4.137 20 C -0.124 4.124 21 C -0.079 4.079 22 N -0.715 5.715 23 C -0.232 4.232 24 H 0.069 0.931 25 C -0.007 4.007 26 N -0.924 5.924 27 Si 0.894 3.106 28 H -0.282 1.282 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.391 0.609 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.134 0.866 48 H 0.386 0.614 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 11.372 10.987 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.158 4.158 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.094 4.094 7 C -0.231 4.231 8 C 0.369 3.631 9 O -0.420 6.420 10 N -0.377 5.377 11 C 0.006 3.994 12 C -0.178 4.178 13 C 0.075 3.925 14 H 0.073 0.927 15 C -0.133 4.133 16 C -0.057 4.057 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.142 4.142 21 C -0.097 4.097 22 N -0.354 5.354 23 C -0.363 4.363 24 H 0.087 0.913 25 C -0.204 4.204 26 N -0.572 5.572 27 Si 0.726 3.274 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.221 1.221 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.184 0.816 35 H 0.188 0.812 36 H 0.224 0.776 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.151 0.849 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.484 11.267 10.834 17.330 hybrid contribution 1.039 0.347 -1.096 1.550 sum 8.523 11.614 9.738 17.388 Atomic orbital electron populations 1.20199 0.89359 1.02688 1.01875 1.20594 0.95708 0.90428 1.04865 1.21539 0.82487 0.99110 1.12708 1.41449 1.08196 1.06658 1.58331 0.74841 1.21917 0.98599 0.83801 1.05107 1.20541 0.92591 0.93236 1.16698 1.17383 0.85611 0.83895 0.76175 1.90752 1.17235 1.83705 1.50331 1.45936 1.08912 1.07040 1.75791 1.21326 0.97598 0.77690 1.02742 1.22254 0.96835 0.97715 1.01039 1.20058 0.92221 0.89973 0.90296 0.92693 1.21158 0.99429 0.91559 1.01175 1.19801 0.97736 0.95626 0.92512 1.20964 1.01693 0.95213 0.96935 1.20924 1.01733 0.94614 0.97834 1.20971 1.02187 0.99307 0.93016 1.21146 1.00142 0.96039 0.96894 1.21281 0.96324 0.92667 0.99443 1.42373 1.14260 1.78896 0.99918 1.19054 0.96329 1.37025 0.83902 0.91290 1.24667 0.96110 1.02323 0.97298 1.69661 1.10187 1.51119 1.26224 0.86322 0.78565 0.77231 0.85288 1.20725 1.22047 1.22051 0.91920 0.92543 0.90073 0.81585 0.81191 0.77626 0.92766 0.89595 0.91001 0.93250 0.90733 0.92774 0.87053 0.87219 0.87266 0.86918 0.84857 0.78066 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.97 36.01 0.36 -0.70 16 2 C -0.11 -1.42 6.35 -102.54 -0.65 -2.07 16 3 C -0.03 -0.29 11.82 -16.83 -0.20 -0.49 16 4 N -0.55 -4.21 5.90 -12.85 -0.08 -4.29 16 5 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 6 C 0.04 0.41 11.40 -16.84 -0.19 0.21 16 7 C -0.22 -3.07 6.29 -103.35 -0.65 -3.72 16 8 C 0.58 10.02 7.81 -12.59 -0.10 9.92 16 9 O -0.54 -11.54 15.32 5.26 0.08 -11.46 16 10 N -0.73 -11.00 5.55 -61.43 -0.34 -11.35 16 11 C 0.13 2.26 5.56 -4.04 -0.02 2.24 16 12 C -0.14 -2.19 4.73 -26.74 -0.13 -2.32 16 13 C 0.19 3.34 2.67 -67.93 -0.18 3.16 16 14 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.09 -1.55 4.75 -27.88 -0.13 -1.69 16 16 C -0.06 -0.99 4.95 -104.62 -0.52 -1.51 16 17 C -0.13 -2.04 9.70 -39.58 -0.38 -2.42 16 18 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 19 C -0.14 -2.12 10.05 -39.59 -0.40 -2.52 16 20 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 21 C -0.08 -1.51 9.31 -39.59 -0.37 -1.88 16 22 N -0.71 -16.15 4.13 -53.43 -0.22 -16.37 16 23 C -0.23 -5.75 7.88 -15.06 -0.12 -5.87 16 24 H 0.07 1.67 6.64 -52.49 -0.35 1.32 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 26 N -0.92 -26.96 13.06 55.49 0.72 -26.24 16 27 Si 0.89 21.70 29.55 -169.99 -5.02 16.68 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.26 6.86 -51.93 -0.36 0.90 16 34 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.17 1.10 7.45 -52.49 -0.39 0.71 16 36 H 0.39 4.56 7.42 -40.82 -0.30 4.25 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.89 7.75 -51.93 -0.40 1.49 16 39 H 0.07 1.23 7.11 -51.93 -0.37 0.86 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.34 7.05 -51.93 -0.37 0.97 16 42 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 47 H 0.13 2.84 7.37 -52.49 -0.39 2.45 16 48 H 0.39 9.87 8.03 -40.82 -0.33 9.54 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -33.24 405.71 -10.71 -43.95 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -7.40 Total: 17.85 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.57 Total: -14.90 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.09 Total: -58.24 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.24 -10.71 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507390607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.172 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds