Wall clock time and date at job start Wed Apr 1 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31611 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99797 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47401 * 89.99929 * 13 11 9 15 15 H 1.48498 * 109.46952 * 209.99605 * 13 11 9 16 16 H 1.48498 * 109.47536 * 329.99567 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21603 * 120.00014 * 359.97438 * 18 17 5 20 20 C 1.47444 * 120.00232 * 179.97438 * 18 17 5 21 21 C 1.38952 * 121.17001 * 359.72097 * 20 18 17 22 22 N 1.32198 * 121.31866 * 179.72279 * 21 20 18 23 23 C 1.31190 * 123.69804 * 0.60423 * 22 21 20 24 24 C 1.40387 * 120.91496 * 359.66992 * 23 22 21 25 25 C 1.40385 * 122.14467 * 179.97438 * 24 23 22 26 26 C 1.36231 * 119.48900 * 180.02562 * 25 24 23 27 27 C 1.39296 * 121.10491 * 0.04521 * 26 25 24 28 28 C 1.36440 * 120.94588 * 359.97438 * 27 26 25 29 29 C 1.39694 * 119.43813 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 37 37 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 39 39 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 40 40 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 41 41 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00172 * 179.97438 * 12 11 9 43 43 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 44 44 H 1.08003 * 119.33562 * 0.02562 * 21 20 18 45 45 H 1.07996 * 119.54916 * 179.69476 * 23 22 21 46 46 H 1.08001 * 120.25828 * 0.02562 * 25 24 23 47 47 H 1.08000 * 119.44916 * 180.02562 * 26 25 24 48 48 H 1.07998 * 119.52708 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.27932 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 2.6205 -2.1347 -5.9425 13 14 1.4603 -0.3951 -7.7612 14 1 2.5302 0.4940 -8.2808 15 1 1.2854 -1.5483 -8.6803 16 1 0.1869 0.3633 -7.6708 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2446 -2.7710 0.0238 20 6 1.7366 -4.4465 -0.5794 21 6 0.5753 -4.7988 -1.2561 22 7 0.1347 -6.0451 -1.2622 23 6 0.7323 -7.0315 -0.6368 24 6 1.9131 -6.8141 0.0907 25 6 2.5735 -7.8502 0.7698 26 6 3.7161 -7.5782 1.4600 27 6 4.2402 -6.2884 1.5043 28 6 3.6239 -5.2579 0.8563 29 6 2.4509 -5.5021 0.1381 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2492 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -0.2075 2.1393 39 1 0.4437 0.0782 -2.4548 40 1 1.9647 0.9986 -2.5444 41 1 2.4217 -1.5804 -3.6010 42 1 2.8771 -2.6358 -6.7324 43 1 0.7412 -2.3303 -1.7311 44 1 0.0243 -4.0400 -1.7919 45 1 0.3104 -8.0246 -0.6827 46 1 2.1788 -8.8552 0.7452 47 1 4.2238 -8.3759 1.9818 48 1 5.1474 -6.1013 2.0596 49 1 4.0395 -4.2620 0.8982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508034105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:19 Heat of formation + Delta-G solvation = 28.000973 kcal Electronic energy + Delta-G solvation = -30357.704206 eV Core-core repulsion = 26477.839169 eV Total energy + Delta-G solvation = -3879.865037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.96999 -39.75293 -37.44614 -37.35315 -34.45648 -33.42643 -32.67047 -31.23664 -31.12484 -29.73059 -27.73616 -27.14173 -26.73389 -24.93044 -23.76482 -23.53641 -22.70723 -21.45815 -20.66470 -18.65146 -18.10659 -17.59239 -17.42493 -16.90282 -15.95584 -15.71314 -15.56820 -14.95507 -14.79671 -14.40766 -14.33194 -13.93614 -13.80564 -13.73081 -13.37891 -13.34380 -13.13474 -12.81967 -12.69512 -12.24376 -12.17842 -12.04467 -11.91736 -11.81314 -11.49521 -11.36210 -11.23447 -11.11632 -10.82773 -10.74459 -10.53544 -10.24163 -10.08373 -9.95680 -9.90646 -9.75444 -9.23761 -9.17826 -8.90701 -8.68051 -8.15739 -6.96341 -5.78750 -3.08767 0.02094 0.81592 1.61779 2.83163 3.26443 3.34811 3.42342 3.47345 3.49140 4.05053 4.21468 4.44879 4.55043 4.60653 4.61735 4.76454 4.92937 4.95272 5.02579 5.09563 5.15065 5.17377 5.42681 5.50935 5.53062 5.58063 5.67221 5.70867 5.77840 5.87689 5.88228 5.90926 5.98141 6.03214 6.07992 6.11339 6.15384 6.26934 6.29418 6.37450 6.44605 6.45300 6.46976 6.51985 6.61868 6.70546 6.78390 6.93910 7.67110 7.76015 7.83776 8.38644 8.44241 9.50659 10.06368 10.41388 11.43376 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003813 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.583907 B = 7342.093745 C = 9191.879179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.130 4.130 5 C 0.150 3.850 6 H 0.089 0.911 7 C 0.141 3.859 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.699 5.699 18 C 0.569 3.431 19 O -0.536 6.536 20 C -0.168 4.168 21 C 0.125 3.875 22 N -0.493 5.493 23 C 0.170 3.830 24 C -0.122 4.122 25 C -0.091 4.091 26 C -0.121 4.121 27 C -0.103 4.103 28 C -0.107 4.107 29 C 0.013 3.987 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.403 0.597 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.133 0.867 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -7.486 18.230 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.187 4.187 5 C 0.045 3.955 6 H 0.107 0.893 7 C 0.013 3.987 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.348 5.348 18 C 0.357 3.643 19 O -0.416 6.416 20 C -0.173 4.173 21 C -0.019 4.019 22 N -0.200 5.200 23 C -0.002 4.002 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.124 4.124 29 C 0.008 3.992 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.239 0.761 44 H 0.177 0.823 45 H 0.181 0.819 46 H 0.151 0.849 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.322 -7.164 17.985 19.498 hybrid contribution 0.324 -0.009 -0.898 0.954 sum -1.998 -7.172 17.087 18.639 Atomic orbital electron populations 1.21922 0.94685 1.01629 1.01714 1.20899 0.95857 0.95665 0.95345 1.21880 1.01195 0.94913 1.01817 1.21890 1.01640 0.99596 0.95564 1.21336 0.99945 0.79650 0.94565 0.89281 1.21110 0.97457 0.94752 0.85355 1.42363 1.67021 1.27750 1.00510 1.19194 1.29142 1.05557 0.83565 0.91159 1.24738 1.00773 0.97322 0.97818 1.69662 1.43121 1.16450 1.28534 0.86209 0.77992 0.77543 0.84531 1.21738 1.21791 1.20742 1.45853 1.28863 1.08573 1.51541 1.17654 0.83649 0.83944 0.79097 1.90605 1.24660 1.81983 1.44323 1.21969 0.98097 0.94384 1.02821 1.22831 0.92223 0.93228 0.93597 1.67107 1.33577 1.00417 1.18939 1.23270 0.89704 0.98205 0.88987 1.19017 0.97966 0.93888 1.01584 1.20924 0.95496 0.98083 0.96583 1.20959 0.96368 0.97118 0.99475 1.21160 0.99785 0.92679 0.98573 1.21838 0.93732 1.02128 0.94722 1.18915 0.94429 0.91115 0.94784 0.91823 0.93142 0.92948 0.92884 0.92538 0.91861 0.93005 0.91920 0.93981 0.95318 0.94588 0.78075 0.93483 0.76145 0.82310 0.81856 0.84928 0.85713 0.85547 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.97 37.16 0.30 -1.45 16 2 C -0.08 -1.02 0.62 -154.51 -0.10 -1.11 16 3 C -0.14 -1.73 8.12 37.15 0.30 -1.43 16 4 C -0.13 -1.76 7.00 37.16 0.26 -1.50 16 5 C 0.15 2.43 1.69 -67.93 -0.11 2.32 16 6 H 0.09 1.65 7.57 -51.93 -0.39 1.26 16 7 C 0.14 2.65 5.10 -4.04 -0.02 2.63 16 8 N -0.73 -17.77 5.43 -59.90 -0.33 -18.10 16 9 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 10 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 13 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.70 -11.04 3.60 -54.87 -0.20 -11.24 16 18 C 0.57 9.35 6.12 -12.52 -0.08 9.27 16 19 O -0.54 -9.49 10.86 5.27 0.06 -9.43 16 20 C -0.17 -2.59 6.07 -102.66 -0.62 -3.21 16 21 C 0.13 1.84 10.71 -17.13 -0.18 1.66 16 22 N -0.49 -7.01 10.22 -12.58 -0.13 -7.14 16 23 C 0.17 1.99 11.00 -17.02 -0.19 1.81 16 24 C -0.12 -1.50 5.74 -106.89 -0.61 -2.11 16 25 C -0.09 -0.86 9.82 -39.50 -0.39 -1.25 16 26 C -0.12 -1.12 9.94 -39.91 -0.40 -1.52 16 27 C -0.10 -1.11 9.96 -39.84 -0.40 -1.50 16 28 C -0.11 -1.47 9.32 -39.69 -0.37 -1.84 16 29 C 0.01 0.19 5.91 -104.74 -0.62 -0.43 16 30 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 36 H 0.05 0.76 5.77 -51.93 -0.30 0.46 16 37 H 0.06 0.93 7.53 -51.93 -0.39 0.53 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 40 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 41 H 0.39 10.09 7.33 -40.82 -0.30 9.79 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.40 6.16 6.71 -40.82 -0.27 5.88 16 44 H 0.16 2.15 6.44 -52.48 -0.34 1.81 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.17 2.50 5.24 -52.49 -0.28 2.22 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -32.11 385.50 -9.49 -41.60 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.93 Total: 15.34 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.47 Total: -6.83 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.07 Total: -63.68 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.06 Total: -9.43 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.11 -9.49 -41.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508034105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.599 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds