Wall clock time and date at job start Wed Apr 1 2020 01:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31611 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99797 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47401 * 89.99929 * 13 11 9 15 15 H 1.48498 * 109.46952 * 209.99605 * 13 11 9 16 16 H 1.48498 * 109.47536 * 329.99567 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21603 * 120.00014 * 359.97438 * 18 17 5 20 20 C 1.47444 * 120.00232 * 179.97438 * 18 17 5 21 21 C 1.38952 * 121.17001 * 359.72097 * 20 18 17 22 22 N 1.32198 * 121.31866 * 179.72279 * 21 20 18 23 23 C 1.31190 * 123.69804 * 0.60423 * 22 21 20 24 24 C 1.40387 * 120.91496 * 359.66992 * 23 22 21 25 25 C 1.40385 * 122.14467 * 179.97438 * 24 23 22 26 26 C 1.36231 * 119.48900 * 180.02562 * 25 24 23 27 27 C 1.39296 * 121.10491 * 0.04521 * 26 25 24 28 28 C 1.36440 * 120.94588 * 359.97438 * 27 26 25 29 29 C 1.39694 * 119.43813 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 37 37 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 39 39 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 40 40 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 41 41 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00172 * 179.97438 * 12 11 9 43 43 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 44 44 H 1.08003 * 119.33562 * 0.02562 * 21 20 18 45 45 H 1.07996 * 119.54916 * 179.69476 * 23 22 21 46 46 H 1.08001 * 120.25828 * 0.02562 * 25 24 23 47 47 H 1.08000 * 119.44916 * 180.02562 * 26 25 24 48 48 H 1.07998 * 119.52708 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.27932 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 2.6205 -2.1347 -5.9425 13 14 1.4603 -0.3951 -7.7612 14 1 2.5302 0.4940 -8.2808 15 1 1.2854 -1.5483 -8.6803 16 1 0.1869 0.3633 -7.6708 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2446 -2.7710 0.0238 20 6 1.7366 -4.4465 -0.5794 21 6 0.5753 -4.7988 -1.2561 22 7 0.1347 -6.0451 -1.2622 23 6 0.7323 -7.0315 -0.6368 24 6 1.9131 -6.8141 0.0907 25 6 2.5735 -7.8502 0.7698 26 6 3.7161 -7.5782 1.4600 27 6 4.2402 -6.2884 1.5043 28 6 3.6239 -5.2579 0.8563 29 6 2.4509 -5.5021 0.1381 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2492 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -0.2075 2.1393 39 1 0.4437 0.0782 -2.4548 40 1 1.9647 0.9986 -2.5444 41 1 2.4217 -1.5804 -3.6010 42 1 2.8771 -2.6358 -6.7324 43 1 0.7412 -2.3303 -1.7311 44 1 0.0243 -4.0400 -1.7919 45 1 0.3104 -8.0246 -0.6827 46 1 2.1788 -8.8552 0.7452 47 1 4.2238 -8.3759 1.9818 48 1 5.1474 -6.1013 2.0596 49 1 4.0395 -4.2620 0.8982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508034105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:17 Heat of formation + Delta-G solvation = 8.510433 kcal Electronic energy + Delta-G solvation = -30358.549379 eV Core-core repulsion = 26477.839169 eV Total energy + Delta-G solvation = -3880.710210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.02600 -40.91391 -38.64692 -38.33959 -36.21195 -34.78921 -33.69943 -32.98024 -32.15512 -30.77112 -29.27239 -28.17409 -27.87535 -26.18688 -25.39088 -24.50312 -23.78929 -22.95367 -21.84068 -19.91315 -19.28480 -19.01966 -18.44419 -18.27557 -17.17573 -16.94578 -16.72852 -16.48168 -15.91011 -15.62958 -15.50999 -15.37622 -15.05864 -14.85741 -14.70941 -14.50026 -14.40984 -14.20241 -13.74336 -13.58986 -13.16761 -13.11643 -13.04615 -12.94643 -12.87147 -12.75611 -12.55595 -12.39913 -12.35226 -12.19255 -12.04407 -11.77027 -11.64519 -11.31781 -11.07467 -11.02352 -10.92112 -10.36129 -10.08594 -9.96722 -9.12262 -9.00347 -7.94599 -5.24203 -0.94872 -0.12452 0.68649 1.47294 1.48531 1.56993 1.77533 2.09274 2.23736 2.55459 3.06857 3.22995 3.39950 3.51191 3.61723 3.66825 3.71795 3.81914 3.89271 4.00123 4.04962 4.23101 4.26610 4.31361 4.35223 4.42370 4.50929 4.60669 4.65702 4.77046 4.80777 4.82981 4.87282 4.94858 5.04599 5.04763 5.07013 5.11662 5.16200 5.22874 5.30210 5.39929 5.42221 5.49281 5.51213 5.53192 5.58252 5.64288 5.92318 6.25512 6.48398 6.82908 7.17762 7.32890 8.06596 8.30042 9.28422 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003813 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.583907 B = 7342.093745 C = 9191.879179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.120 4.120 5 C 0.159 3.841 6 H 0.059 0.941 7 C 0.144 3.856 8 N -0.743 5.743 9 C -0.242 4.242 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.290 1.290 15 H -0.298 1.298 16 H -0.266 1.266 17 N -0.697 5.697 18 C 0.567 3.433 19 O -0.557 6.557 20 C -0.198 4.198 21 C 0.123 3.877 22 N -0.521 5.521 23 C 0.185 3.815 24 C -0.139 4.139 25 C -0.075 4.075 26 C -0.123 4.123 27 C -0.089 4.089 28 C -0.146 4.146 29 C -0.009 4.009 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.404 0.596 44 H 0.158 0.842 45 H 0.209 0.791 46 H 0.177 0.823 47 H 0.165 0.835 48 H 0.148 0.852 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 -8.887 19.630 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.177 4.177 5 C 0.055 3.945 6 H 0.077 0.923 7 C 0.017 3.983 8 N -0.386 5.386 9 C -0.374 4.374 10 H 0.098 0.902 11 C -0.265 4.265 12 N -0.620 5.620 13 Si 0.801 3.199 14 H -0.217 1.217 15 H -0.225 1.225 16 H -0.190 1.190 17 N -0.347 5.347 18 C 0.355 3.645 19 O -0.438 6.438 20 C -0.204 4.204 21 C -0.021 4.021 22 N -0.229 5.229 23 C 0.014 3.986 24 C -0.141 4.141 25 C -0.095 4.095 26 C -0.140 4.140 27 C -0.108 4.108 28 C -0.163 4.163 29 C -0.014 4.014 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.240 0.760 44 H 0.175 0.825 45 H 0.226 0.774 46 H 0.194 0.806 47 H 0.182 0.818 48 H 0.165 0.835 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.440 -8.518 19.415 21.478 hybrid contribution 0.722 0.325 -1.193 1.432 sum -2.718 -8.193 18.221 20.162 Atomic orbital electron populations 1.21883 0.93267 1.01736 1.02621 1.20856 0.96872 0.95914 0.93482 1.21872 1.00804 0.94052 1.02862 1.21768 1.00396 0.99047 0.96485 1.21163 0.98181 0.80196 0.95009 0.92264 1.21245 0.98135 0.94435 0.84438 1.42547 1.66849 1.27721 1.01489 1.19631 1.27750 1.05310 0.84671 0.90199 1.25535 1.01653 0.97812 1.01506 1.69837 1.45182 1.18025 1.28926 0.85166 0.78121 0.76679 0.79938 1.21747 1.22528 1.19046 1.45802 1.28837 1.08427 1.51622 1.17921 0.83312 0.84601 0.78635 1.90592 1.25510 1.82456 1.45261 1.21923 0.99318 0.94051 1.05066 1.22855 0.91977 0.93929 0.93306 1.67175 1.34555 1.00523 1.20671 1.24035 0.88819 0.99205 0.86557 1.19341 0.98612 0.93652 1.02545 1.21449 0.94709 0.99036 0.94264 1.21408 0.96342 0.97081 0.99192 1.21517 0.99763 0.92833 0.96725 1.21700 0.94921 1.02197 0.97525 1.19176 0.94924 0.92151 0.95140 0.91967 0.91091 0.93304 0.90598 0.93261 0.91997 0.94465 0.93739 0.91869 0.93786 0.94173 0.79622 0.94246 0.75996 0.82455 0.77436 0.80569 0.81779 0.83466 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 7.97 71.98 0.57 -2.67 16 2 C -0.07 -1.87 0.62 -52.18 -0.03 -1.91 16 3 C -0.14 -3.31 8.12 71.98 0.58 -2.73 16 4 C -0.12 -3.32 7.00 71.98 0.50 -2.82 16 5 C 0.16 5.43 1.69 44.99 0.08 5.51 16 6 H 0.06 2.37 7.57 -2.39 -0.02 2.36 16 7 C 0.14 5.51 5.10 86.38 0.44 5.95 16 8 N -0.74 -37.17 5.43 -343.43 -1.87 -39.03 16 9 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 12 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 13 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 14 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 N -0.70 -23.64 3.60 -445.78 -1.60 -25.24 16 18 C 0.57 20.27 6.12 86.67 0.53 20.80 16 19 O -0.56 -21.66 10.86 -4.04 -0.04 -21.70 16 20 C -0.20 -6.57 6.07 -18.60 -0.11 -6.68 16 21 C 0.12 3.82 10.71 84.81 0.91 4.73 16 22 N -0.52 -14.79 10.22 -193.72 -1.98 -16.77 16 23 C 0.18 3.99 11.00 85.31 0.94 4.93 16 24 C -0.14 -3.21 5.74 -21.33 -0.12 -3.33 16 25 C -0.08 -1.14 9.82 22.32 0.22 -0.92 16 26 C -0.12 -1.82 9.94 22.06 0.22 -1.60 16 27 C -0.09 -1.81 9.96 22.10 0.22 -1.59 16 28 C -0.15 -4.19 9.32 22.20 0.21 -3.98 16 29 C -0.01 -0.26 5.91 -19.94 -0.12 -0.38 16 30 H 0.06 1.48 6.32 -2.39 -0.02 1.46 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.18 7.60 -2.38 -0.02 1.16 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.50 6.54 -2.39 -0.02 1.48 16 36 H 0.04 1.14 5.77 -2.39 -0.01 1.12 16 37 H 0.04 1.38 7.53 -2.39 -0.02 1.36 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.59 6.17 -2.38 -0.01 1.58 16 40 H 0.04 1.54 6.71 -2.39 -0.02 1.52 16 41 H 0.37 20.46 7.33 -92.71 -0.68 19.78 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.40 13.27 6.71 -92.71 -0.62 12.64 16 44 H 0.16 4.64 6.44 -2.91 -0.02 4.62 16 45 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 47 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 49 H 0.14 4.68 5.24 -2.91 -0.02 4.67 16 Total: -1.00 -73.19 385.50 2.85 -70.34 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -0.31 Total: 46.78 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.34 Total: -2.84 kcal Atomic # 7 Polarization: -135.64 SS G_CDS: -5.17 Total: -140.81 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.04 Total: -21.70 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.19 2.85 -70.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508034105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.851 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds