Wall clock time and date at job start Wed Apr 1 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46715 * 2 1 4 4 C 1.52991 * 109.47534 * 120.00645 * 2 1 3 5 5 C 1.52999 * 109.47624 * 66.01352 * 4 2 1 6 6 H 1.09004 * 109.46870 * 303.98732 * 5 4 2 7 7 C 1.53000 * 109.46575 * 63.98500 * 5 4 2 8 8 N 1.46502 * 109.47022 * 175.00342 * 7 5 4 9 9 C 1.36938 * 120.00426 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99440 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00411 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99707 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00217 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47036 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47237 * 119.99664 * 13 11 9 16 16 H 1.48505 * 109.47226 * 240.00071 * 13 11 9 17 17 N 1.46492 * 109.47429 * 183.98524 * 5 4 2 18 18 C 1.34773 * 120.00260 * 81.35134 * 17 5 4 19 19 O 1.21563 * 119.99805 * 4.72956 * 18 17 5 20 20 C 1.47775 * 120.00665 * 184.73171 * 18 17 5 21 21 C 1.40655 * 119.69196 * 359.97438 * 20 18 17 22 22 C 1.35853 * 120.87196 * 179.97438 * 21 20 18 23 23 C 1.40388 * 119.84215 * 359.97438 * 22 21 20 24 24 C 1.40646 * 121.96709 * 180.02562 * 23 22 21 25 25 C 1.36218 * 118.72736 * 179.97438 * 24 23 22 26 26 N 1.32600 * 121.90101 * 359.97438 * 25 24 23 27 27 C 1.31241 * 122.74283 * 0.02562 * 26 25 24 28 28 C 1.40552 * 119.88403 * 0.02562 * 27 26 25 29 29 C 1.38563 * 119.70282 * 179.72377 * 20 18 17 30 30 H 1.08999 * 109.47272 * 304.02170 * 1 2 3 31 31 H 1.08997 * 109.47795 * 64.02765 * 1 2 3 32 32 H 1.09003 * 109.47157 * 184.02926 * 1 2 3 33 33 H 1.09001 * 109.46701 * 240.00703 * 2 1 3 34 34 H 1.09004 * 109.46518 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47647 * 300.00336 * 3 2 1 36 36 H 1.09001 * 109.46962 * 60.00862 * 3 2 1 37 37 H 1.09010 * 109.46876 * 306.01543 * 4 2 1 38 38 H 1.08998 * 109.47186 * 186.01704 * 4 2 1 39 39 H 1.08994 * 109.47651 * 55.00319 * 7 5 4 40 40 H 1.09005 * 109.47160 * 294.99981 * 7 5 4 41 41 H 0.97004 * 120.00077 * 359.97438 * 8 7 5 42 42 H 0.97003 * 120.00081 * 179.97438 * 12 11 9 43 43 H 0.97007 * 120.00255 * 261.35026 * 17 5 4 44 44 H 1.07998 * 119.56465 * 359.97438 * 21 20 18 45 45 H 1.08000 * 120.07564 * 179.97438 * 22 21 20 46 46 H 1.07996 * 120.63240 * 0.02562 * 24 23 22 47 47 H 1.07997 * 119.04911 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.05118 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.34430 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6573 -2.2009 1.1758 6 1 0.5784 -2.2912 1.0491 7 6 2.3667 -2.8527 -0.0128 8 7 2.0957 -4.2925 -0.0135 9 6 2.6302 -5.0894 -0.9904 10 1 3.2512 -4.6564 -1.7607 11 6 2.3740 -6.4537 -0.9907 12 7 1.6176 -6.9813 -0.0516 13 14 3.1025 -7.5406 -2.3237 14 1 3.9088 -6.7100 -3.2539 15 1 3.9705 -8.5724 -1.7016 16 1 2.0068 -8.2034 -3.0758 17 7 2.0616 -2.8718 2.4137 18 6 1.2843 -2.7863 3.5113 19 8 0.2072 -2.2258 3.4513 20 6 1.7412 -3.3738 4.7880 21 6 2.9883 -4.0213 4.8502 22 6 3.4320 -4.5694 6.0113 23 6 2.6404 -4.4913 7.1681 24 6 3.0561 -5.0424 8.3935 25 6 2.2355 -4.9280 9.4747 26 7 1.0625 -4.3139 9.4024 27 6 0.6098 -3.7766 8.2939 28 6 1.3793 -3.8404 7.1195 29 6 0.9395 -3.2773 5.9141 30 1 -0.3634 0.5750 0.8517 31 1 -0.3634 0.4500 -0.9238 32 1 -0.3633 -1.0251 0.0722 33 1 1.8932 -0.5137 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.5914 -0.2735 2.1359 38 1 3.1247 -0.6290 1.3045 39 1 3.4406 -2.6852 0.0685 40 1 1.9996 -2.4136 -0.9405 41 1 1.5383 -4.6814 0.6786 42 1 1.4382 -7.9346 -0.0520 43 1 2.8888 -3.3777 2.4434 44 1 3.6011 -4.0837 3.9631 45 1 4.3916 -5.0640 6.0444 46 1 4.0080 -5.5458 8.4757 47 1 2.5497 -5.3489 10.4184 48 1 -0.3524 -3.2862 8.2842 49 1 -0.0157 -2.7760 5.8624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568336856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:56 Heat of formation + Delta-G solvation = 12.588108 kcal Electronic energy + Delta-G solvation = -29158.971575 eV Core-core repulsion = 25278.438187 eV Total energy + Delta-G solvation = -3880.533389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04844 -39.72373 -37.62263 -36.77655 -34.89092 -33.63628 -33.15416 -31.78798 -30.84955 -29.91758 -28.96133 -27.03614 -25.62168 -24.93395 -24.08412 -22.87670 -22.42882 -21.56931 -20.65154 -19.42140 -18.37487 -17.90069 -17.10241 -16.88665 -15.92971 -15.79914 -15.35641 -15.20753 -14.81308 -14.49957 -14.35119 -14.12010 -14.02031 -13.75336 -13.63875 -13.50620 -13.33682 -13.20859 -12.81562 -12.30872 -12.18952 -12.17003 -12.06699 -11.91990 -11.66288 -11.43197 -11.13505 -10.92100 -10.81200 -10.78213 -10.48984 -10.39299 -10.25925 -10.02614 -9.86543 -9.78710 -9.60620 -9.29619 -8.96285 -8.70707 -8.26138 -7.00582 -5.82437 -3.12598 0.06037 0.55531 1.64080 2.49659 3.33328 3.38888 3.39870 3.44844 3.46966 3.94253 4.17662 4.33354 4.49479 4.52750 4.57046 4.72805 4.85992 4.94700 4.99194 5.02432 5.05643 5.11015 5.35809 5.38989 5.49440 5.50434 5.53603 5.59732 5.72292 5.73649 5.74653 5.78490 5.82755 5.91313 5.99444 6.08674 6.11585 6.15869 6.17981 6.19612 6.32769 6.38826 6.40965 6.48781 6.53968 6.57737 6.69203 6.89903 7.64403 7.72955 7.77431 8.34959 8.42159 9.47110 10.02531 10.37804 11.39694 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007826 B = 0.003357 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.827436 B = 8339.855688 C =11167.245524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.135 3.865 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.705 5.705 18 C 0.557 3.443 19 O -0.541 6.541 20 C -0.127 4.127 21 C -0.064 4.064 22 C -0.119 4.119 23 C -0.009 4.009 24 C -0.159 4.159 25 C 0.079 3.921 26 N -0.494 5.494 27 C 0.158 3.842 28 C -0.124 4.124 29 C -0.020 4.020 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.038 0.962 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.404 0.596 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.153 0.847 48 H 0.166 0.834 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 11.052 13.823 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.159 4.159 5 C 0.031 3.969 6 H 0.109 0.891 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.355 5.355 18 C 0.344 3.656 19 O -0.420 6.420 20 C -0.130 4.130 21 C -0.084 4.084 22 C -0.136 4.136 23 C -0.014 4.014 24 C -0.179 4.179 25 C -0.063 4.063 26 N -0.202 5.202 27 C -0.014 4.014 28 C -0.126 4.126 29 C -0.041 4.041 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.240 0.760 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.170 0.830 48 H 0.183 0.817 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.398 11.370 14.443 18.537 hybrid contribution 1.222 -1.295 -1.337 2.226 sum 3.620 10.076 13.106 16.923 Atomic orbital electron populations 1.21877 0.95143 1.02432 1.01088 1.21132 0.96144 0.95786 0.98512 1.21823 1.00706 0.96236 1.01384 1.21962 1.00831 0.94709 0.98351 1.21379 1.01235 0.90863 0.83408 0.89074 1.21022 0.96618 0.86532 0.94222 1.42380 1.61029 1.00972 1.33314 1.19245 1.24465 0.89200 1.04477 0.91094 1.24746 1.00397 0.96870 0.98714 1.69677 1.41795 1.11640 1.34657 0.86137 0.78266 0.80696 0.81179 1.20546 1.21879 1.21847 1.45923 1.25793 1.52971 1.10836 1.18128 0.84272 0.79562 0.83625 1.90751 1.21322 1.44619 1.85323 1.20056 0.96025 1.02403 0.94526 1.21144 0.94565 0.94197 0.98474 1.20864 1.00238 1.00939 0.91601 1.18296 0.93365 0.95266 0.94458 1.21935 1.01667 1.01471 0.92796 1.22223 0.89734 0.95705 0.98665 1.67471 1.14951 1.09321 1.28486 1.23306 0.98363 0.93179 0.86547 1.18996 0.95906 1.01801 0.95868 1.21428 0.98922 0.93952 0.89824 0.92928 0.93108 0.91972 0.90366 0.92894 0.92883 0.93014 0.91654 0.91886 0.95874 0.94483 0.78018 0.93514 0.76000 0.84763 0.84513 0.84309 0.82999 0.81657 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.06 37.16 0.34 -1.55 16 2 C -0.10 -1.20 2.78 -90.63 -0.25 -1.45 16 3 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 4 C -0.12 -1.61 4.40 -26.74 -0.12 -1.72 16 5 C 0.14 2.20 2.07 -67.93 -0.14 2.06 16 6 H 0.09 1.68 5.84 -51.93 -0.30 1.38 16 7 C 0.14 2.69 5.41 -4.04 -0.02 2.67 16 8 N -0.73 -17.55 5.43 -59.91 -0.33 -17.88 16 9 C -0.24 -6.51 9.99 -15.06 -0.15 -6.67 16 10 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 13 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 N -0.70 -11.04 4.50 -54.78 -0.25 -11.29 16 18 C 0.56 9.02 7.65 -12.36 -0.09 8.93 16 19 O -0.54 -10.11 15.99 5.31 0.08 -10.03 16 20 C -0.13 -1.75 5.87 -104.97 -0.62 -2.37 16 21 C -0.06 -0.78 9.44 -39.52 -0.37 -1.15 16 22 C -0.12 -1.29 9.77 -39.63 -0.39 -1.67 16 23 C -0.01 -0.10 5.75 -106.74 -0.61 -0.71 16 24 C -0.16 -1.51 9.87 -39.40 -0.39 -1.90 16 25 C 0.08 0.78 11.07 -17.95 -0.20 0.58 16 26 N -0.49 -5.67 10.30 -13.12 -0.14 -5.80 16 27 C 0.16 1.69 11.05 -16.93 -0.19 1.50 16 28 C -0.12 -1.46 5.74 -106.88 -0.61 -2.07 16 29 C -0.02 -0.26 9.37 -38.75 -0.36 -0.62 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 33 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.93 8.11 -51.92 -0.42 0.51 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.04 0.70 6.66 -51.93 -0.35 0.36 16 41 H 0.39 9.96 7.33 -40.82 -0.30 9.66 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.40 5.99 6.56 -40.82 -0.27 5.73 16 44 H 0.13 1.48 6.35 -52.49 -0.33 1.15 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 48 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.15 1.73 7.61 -52.49 -0.40 1.33 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -32.48 400.67 -10.05 -42.53 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.23 Total: 14.05 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.94 Total: -7.72 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.02 Total: -61.71 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.48 -10.05 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568336856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.116 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds