Wall clock time and date at job start Wed Apr 1 2020 01:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46715 * 2 1 4 4 C 1.52991 * 109.47534 * 120.00645 * 2 1 3 5 5 C 1.52999 * 109.47624 * 66.01352 * 4 2 1 6 6 H 1.09004 * 109.46870 * 303.98732 * 5 4 2 7 7 C 1.53000 * 109.46575 * 63.98500 * 5 4 2 8 8 N 1.46502 * 109.47022 * 175.00342 * 7 5 4 9 9 C 1.36938 * 120.00426 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99440 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00411 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99707 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00217 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47036 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47237 * 119.99664 * 13 11 9 16 16 H 1.48505 * 109.47226 * 240.00071 * 13 11 9 17 17 N 1.46492 * 109.47429 * 183.98524 * 5 4 2 18 18 C 1.34773 * 120.00260 * 81.35134 * 17 5 4 19 19 O 1.21563 * 119.99805 * 4.72956 * 18 17 5 20 20 C 1.47775 * 120.00665 * 184.73171 * 18 17 5 21 21 C 1.40655 * 119.69196 * 359.97438 * 20 18 17 22 22 C 1.35853 * 120.87196 * 179.97438 * 21 20 18 23 23 C 1.40388 * 119.84215 * 359.97438 * 22 21 20 24 24 C 1.40646 * 121.96709 * 180.02562 * 23 22 21 25 25 C 1.36218 * 118.72736 * 179.97438 * 24 23 22 26 26 N 1.32600 * 121.90101 * 359.97438 * 25 24 23 27 27 C 1.31241 * 122.74283 * 0.02562 * 26 25 24 28 28 C 1.40552 * 119.88403 * 0.02562 * 27 26 25 29 29 C 1.38563 * 119.70282 * 179.72377 * 20 18 17 30 30 H 1.08999 * 109.47272 * 304.02170 * 1 2 3 31 31 H 1.08997 * 109.47795 * 64.02765 * 1 2 3 32 32 H 1.09003 * 109.47157 * 184.02926 * 1 2 3 33 33 H 1.09001 * 109.46701 * 240.00703 * 2 1 3 34 34 H 1.09004 * 109.46518 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47647 * 300.00336 * 3 2 1 36 36 H 1.09001 * 109.46962 * 60.00862 * 3 2 1 37 37 H 1.09010 * 109.46876 * 306.01543 * 4 2 1 38 38 H 1.08998 * 109.47186 * 186.01704 * 4 2 1 39 39 H 1.08994 * 109.47651 * 55.00319 * 7 5 4 40 40 H 1.09005 * 109.47160 * 294.99981 * 7 5 4 41 41 H 0.97004 * 120.00077 * 359.97438 * 8 7 5 42 42 H 0.97003 * 120.00081 * 179.97438 * 12 11 9 43 43 H 0.97007 * 120.00255 * 261.35026 * 17 5 4 44 44 H 1.07998 * 119.56465 * 359.97438 * 21 20 18 45 45 H 1.08000 * 120.07564 * 179.97438 * 22 21 20 46 46 H 1.07996 * 120.63240 * 0.02562 * 24 23 22 47 47 H 1.07997 * 119.04911 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.05118 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.34430 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6573 -2.2009 1.1758 6 1 0.5784 -2.2912 1.0491 7 6 2.3667 -2.8527 -0.0128 8 7 2.0957 -4.2925 -0.0135 9 6 2.6302 -5.0894 -0.9904 10 1 3.2512 -4.6564 -1.7607 11 6 2.3740 -6.4537 -0.9907 12 7 1.6176 -6.9813 -0.0516 13 14 3.1025 -7.5406 -2.3237 14 1 3.9088 -6.7100 -3.2539 15 1 3.9705 -8.5724 -1.7016 16 1 2.0068 -8.2034 -3.0758 17 7 2.0616 -2.8718 2.4137 18 6 1.2843 -2.7863 3.5113 19 8 0.2072 -2.2258 3.4513 20 6 1.7412 -3.3738 4.7880 21 6 2.9883 -4.0213 4.8502 22 6 3.4320 -4.5694 6.0113 23 6 2.6404 -4.4913 7.1681 24 6 3.0561 -5.0424 8.3935 25 6 2.2355 -4.9280 9.4747 26 7 1.0625 -4.3139 9.4024 27 6 0.6098 -3.7766 8.2939 28 6 1.3793 -3.8404 7.1195 29 6 0.9395 -3.2773 5.9141 30 1 -0.3634 0.5750 0.8517 31 1 -0.3634 0.4500 -0.9238 32 1 -0.3633 -1.0251 0.0722 33 1 1.8932 -0.5137 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.5914 -0.2735 2.1359 38 1 3.1247 -0.6290 1.3045 39 1 3.4406 -2.6852 0.0685 40 1 1.9996 -2.4136 -0.9405 41 1 1.5383 -4.6814 0.6786 42 1 1.4382 -7.9346 -0.0520 43 1 2.8888 -3.3777 2.4434 44 1 3.6011 -4.0837 3.9631 45 1 4.3916 -5.0640 6.0444 46 1 4.0080 -5.5458 8.4757 47 1 2.5497 -5.3489 10.4184 48 1 -0.3524 -3.2862 8.2842 49 1 -0.0157 -2.7760 5.8624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568336856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:54 Heat of formation + Delta-G solvation = -6.570053 kcal Electronic energy + Delta-G solvation = -29159.802336 eV Core-core repulsion = 25278.438187 eV Total energy + Delta-G solvation = -3881.364149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95404 -40.91512 -38.75017 -37.83806 -36.36016 -35.20119 -34.00936 -33.18184 -32.24952 -30.87096 -30.23256 -28.00535 -27.22844 -25.95951 -24.96173 -24.53078 -23.42865 -22.76197 -21.83302 -20.58180 -19.61242 -18.98391 -18.72404 -17.87997 -17.10237 -16.93726 -16.70120 -16.19132 -16.02268 -15.88871 -15.39960 -15.25253 -15.14654 -15.02244 -14.84651 -14.57067 -14.52136 -14.25240 -14.23300 -13.76449 -13.43268 -13.15990 -13.05368 -12.95439 -12.86859 -12.80002 -12.62281 -12.31760 -12.18918 -12.01482 -11.90569 -11.76228 -11.56017 -11.36244 -11.24193 -11.10233 -10.91393 -10.52006 -10.25215 -9.98021 -9.11654 -9.00657 -7.93950 -5.23619 -0.81751 -0.34326 0.76871 1.48142 1.49361 1.50374 1.58848 2.11747 2.33608 2.56201 3.04890 3.40367 3.44406 3.48590 3.60739 3.65299 3.74789 3.83786 3.91828 3.99166 4.05503 4.08093 4.16433 4.19538 4.30587 4.41224 4.58134 4.62973 4.66911 4.75654 4.77747 4.81835 4.87994 4.91013 4.93016 4.94714 5.00476 5.05511 5.13174 5.15432 5.18955 5.30708 5.35391 5.48503 5.49933 5.52957 5.57179 5.61120 5.70353 6.26349 6.50984 6.93736 7.15595 7.33984 8.06814 8.30763 9.29080 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007826 B = 0.003357 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.827436 B = 8339.855688 C =11167.245524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.108 4.108 5 C 0.144 3.856 6 H 0.064 0.936 7 C 0.147 3.853 8 N -0.743 5.743 9 C -0.241 4.241 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.968 5.968 13 Si 0.970 3.030 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.299 1.299 17 N -0.702 5.702 18 C 0.555 3.445 19 O -0.575 6.575 20 C -0.147 4.147 21 C -0.077 4.077 22 C -0.111 4.111 23 C -0.023 4.023 24 C -0.155 4.155 25 C 0.073 3.927 26 N -0.512 5.512 27 C 0.152 3.848 28 C -0.136 4.136 29 C -0.021 4.021 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.408 0.592 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.171 0.829 47 H 0.181 0.819 48 H 0.185 0.815 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 11.517 14.370 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.147 4.147 5 C 0.040 3.960 6 H 0.082 0.918 7 C 0.020 3.980 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.618 5.618 13 Si 0.800 3.200 14 H -0.189 1.189 15 H -0.220 1.220 16 H -0.227 1.227 17 N -0.353 5.353 18 C 0.343 3.657 19 O -0.457 6.457 20 C -0.150 4.150 21 C -0.097 4.097 22 C -0.128 4.128 23 C -0.028 4.028 24 C -0.174 4.174 25 C -0.069 4.069 26 N -0.220 5.220 27 C -0.019 4.019 28 C -0.138 4.138 29 C -0.042 4.042 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.245 0.755 44 H 0.158 0.842 45 H 0.183 0.817 46 H 0.188 0.812 47 H 0.198 0.802 48 H 0.202 0.798 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.493 11.879 14.971 19.632 hybrid contribution 0.572 -1.406 -1.409 2.071 sum 5.064 10.474 13.561 17.868 Atomic orbital electron populations 1.21857 0.95718 1.00955 1.01852 1.21139 0.95664 0.97178 0.97520 1.21775 1.01276 0.94487 1.02084 1.21868 1.01675 0.92400 0.98707 1.21212 0.99356 0.92560 0.82910 0.91779 1.21143 0.97559 0.83840 0.95408 1.42549 1.60655 1.02944 1.32448 1.19647 1.23362 0.89640 1.04573 0.90263 1.25516 1.01549 0.98372 1.01001 1.69838 1.43848 1.11413 1.36730 0.85117 0.77249 0.78837 0.78792 1.18855 1.22042 1.22651 1.45894 1.25855 1.52933 1.10588 1.18526 0.83728 0.78992 0.84425 1.90719 1.22693 1.46289 1.85960 1.19958 0.97410 1.04089 0.93576 1.21220 0.94127 0.94827 0.99476 1.21176 1.01060 0.99880 0.90725 1.18636 0.93279 0.95304 0.95564 1.22266 1.02772 1.00743 0.91631 1.22769 0.89130 0.94964 1.00047 1.67535 1.15977 1.09819 1.28660 1.23627 0.99071 0.93140 0.86081 1.19126 0.96685 1.02241 0.95793 1.21491 0.98822 0.93851 0.90037 0.92872 0.91710 0.94464 0.90815 0.91940 0.91803 0.92740 0.92365 0.90328 0.94299 0.94103 0.79466 0.94192 0.75502 0.84187 0.81662 0.81180 0.80165 0.79764 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.06 71.98 0.65 -3.09 16 2 C -0.10 -2.29 2.78 -10.80 -0.03 -2.32 16 3 C -0.14 -2.60 9.19 71.98 0.66 -1.94 16 4 C -0.11 -2.84 4.40 30.59 0.13 -2.70 16 5 C 0.14 4.77 2.07 44.99 0.09 4.86 16 6 H 0.06 2.50 5.84 -2.39 -0.01 2.49 16 7 C 0.15 5.45 5.41 86.38 0.47 5.92 16 8 N -0.74 -35.96 5.43 -343.44 -1.87 -37.83 16 9 C -0.24 -12.84 9.99 84.03 0.84 -12.00 16 10 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 11 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 12 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 13 Si 0.97 45.02 29.55 68.60 2.03 47.04 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 17 N -0.70 -22.62 4.50 -445.49 -2.00 -24.62 16 18 C 0.55 18.76 7.65 86.77 0.66 19.43 16 19 O -0.58 -22.68 15.99 -3.91 -0.06 -22.74 16 20 C -0.15 -4.19 5.87 -20.09 -0.12 -4.31 16 21 C -0.08 -1.85 9.44 22.31 0.21 -1.64 16 22 C -0.11 -2.24 9.77 22.24 0.22 -2.02 16 23 C -0.02 -0.48 5.75 -21.24 -0.12 -0.60 16 24 C -0.15 -2.53 9.87 22.39 0.22 -2.31 16 25 C 0.07 1.26 11.07 84.11 0.93 2.19 16 26 N -0.51 -10.99 10.30 -195.41 -2.01 -13.00 16 27 C 0.15 3.16 11.05 85.35 0.94 4.10 16 28 C -0.14 -3.18 5.74 -21.32 -0.12 -3.30 16 29 C -0.02 -0.55 9.37 22.81 0.21 -0.33 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.12 6.35 -2.39 -0.02 1.11 16 33 H 0.07 1.83 6.37 -2.39 -0.02 1.82 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.65 8.11 -2.38 -0.02 1.63 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.52 6.66 -2.38 -0.02 1.50 16 41 H 0.37 19.83 7.33 -92.71 -0.68 19.15 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.41 12.31 6.56 -92.70 -0.61 11.70 16 44 H 0.14 3.08 6.35 -2.91 -0.02 3.06 16 45 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 46 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 48 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 49 H 0.15 3.68 7.61 -2.91 -0.02 3.66 16 Total: -1.00 -70.56 400.67 2.38 -68.18 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.31 Total: 44.56 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 6.32 Total: -3.61 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -5.60 Total: -133.43 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.56 2.38 -68.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568336856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.612 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds