Wall clock time and date at job start Wed Apr 1 2020 00:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36764 * 125.80327 * 2 1 4 4 C 1.47267 * 126.94178 * 359.97224 * 3 2 1 5 5 O 1.21625 * 119.99997 * 8.85027 * 4 3 2 6 6 N 1.34778 * 120.00153 * 188.85132 * 4 3 2 7 7 C 1.46503 * 120.00044 * 358.64080 * 6 4 3 8 8 C 1.53000 * 109.47066 * 277.05472 * 7 6 4 9 9 N 1.46503 * 109.47066 * 180.02562 * 8 7 6 10 10 C 1.36935 * 119.99948 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00411 * 359.97438 * 10 9 8 12 12 C 1.38810 * 119.99977 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00061 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00176 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47325 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47290 * 119.99721 * 14 12 10 17 17 H 1.48502 * 109.47557 * 239.99838 * 14 12 10 18 18 C 1.46502 * 120.00123 * 178.64754 * 6 4 3 19 19 C 1.50699 * 109.46393 * 274.80237 * 18 6 4 20 20 C 1.38238 * 120.00409 * 85.12727 * 19 18 6 21 21 C 1.38232 * 120.00106 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00110 * 0.06371 * 21 20 19 23 23 C 1.38231 * 120.00176 * 359.91257 * 22 21 20 24 24 C 1.38237 * 119.99831 * 0.04338 * 23 22 21 25 25 C 1.46682 * 106.11857 * 179.71357 * 3 2 1 26 26 C 1.34486 * 106.33146 * 0.25861 * 25 3 2 27 27 N 1.34666 * 125.80263 * 180.15738 * 2 1 3 28 28 C 1.46497 * 124.84731 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.46421 * 90.00133 * 1 2 3 30 30 H 1.08996 * 109.47231 * 210.00288 * 1 2 3 31 31 H 1.08998 * 109.46852 * 330.00882 * 1 2 3 32 32 H 1.08997 * 109.46961 * 37.04964 * 7 6 4 33 33 H 1.08999 * 109.46968 * 157.05368 * 7 6 4 34 34 H 1.08998 * 109.47189 * 299.99966 * 8 7 6 35 35 H 1.08999 * 109.47312 * 60.00106 * 8 7 6 36 36 H 0.97001 * 119.99599 * 359.97438 * 9 8 7 37 37 H 0.97005 * 120.00483 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47360 * 154.80089 * 18 6 4 39 39 H 1.08997 * 109.47363 * 34.79662 * 18 6 4 40 40 H 1.07995 * 119.99503 * 359.69273 * 20 19 18 41 41 H 1.07998 * 120.00277 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.00278 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00606 * 180.02562 * 23 22 21 44 44 H 1.08007 * 119.99926 * 180.02562 * 24 23 22 45 45 H 1.07998 * 126.83655 * 180.22751 * 25 3 2 46 46 H 1.08007 * 125.57120 * 180.02562 * 26 25 3 47 47 H 1.08996 * 109.47421 * 270.30924 * 28 27 2 48 48 H 1.08999 * 109.47135 * 30.31046 * 28 27 2 49 49 H 1.09001 * 109.47098 * 150.30960 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0006 5 8 0.6959 2.7877 0.1609 6 7 2.7718 3.5012 -0.1801 7 6 4.1906 3.1752 -0.3449 8 6 4.8317 2.9781 1.0303 9 7 6.2506 2.6526 0.8655 10 6 7.0345 2.4312 1.9661 11 1 6.6070 2.4968 2.9558 12 6 8.3790 2.1233 1.8100 13 7 8.9002 2.0438 0.6041 14 14 9.4486 1.8219 3.3114 15 1 8.6290 1.9695 4.5409 16 1 10.0086 0.4477 3.2525 17 1 10.5587 2.8081 3.3346 18 6 2.3331 4.8987 -0.2103 19 6 1.8872 5.2550 -1.6050 20 6 0.5937 4.9812 -2.0083 21 6 0.1845 5.3085 -3.2875 22 6 1.0693 5.9085 -4.1638 23 6 2.3627 6.1828 -3.7605 24 6 2.7716 5.8563 -2.4810 25 6 3.6882 0.6151 0.0070 26 6 3.6096 -0.7274 0.0048 27 7 2.2948 -1.0922 -0.0030 28 6 1.8094 -2.4744 -0.0073 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 4.2875 2.2579 -0.9257 33 1 4.6925 3.9902 -0.8664 34 1 4.7348 3.8953 1.6111 35 1 4.3298 2.1631 1.5517 36 1 6.6344 2.5933 -0.0234 37 1 9.8397 1.8283 0.4949 38 1 3.1599 5.5455 0.0833 39 1 1.5025 5.0338 0.4824 40 1 -0.0959 4.5074 -1.3254 41 1 -0.8259 5.0942 -3.6027 42 1 0.7496 6.1647 -5.1631 43 1 3.0539 6.6519 -4.4450 44 1 3.7821 6.0710 -2.1656 45 1 4.5890 1.2109 0.0124 46 1 4.4498 -1.4060 0.0090 47 1 1.6834 -2.8185 1.0192 48 1 0.8522 -2.5217 -0.5265 49 1 2.5315 -3.1115 -0.5180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569869947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:22 Heat of formation + Delta-G solvation = 79.464968 kcal Electronic energy + Delta-G solvation = -30045.622331 eV Core-core repulsion = 26167.988941 eV Total energy + Delta-G solvation = -3877.633390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.26456 -39.66318 -38.48103 -36.22263 -34.30576 -32.96981 -31.76194 -31.41609 -30.88105 -30.79540 -27.93634 -27.19316 -26.07579 -25.33190 -23.73399 -22.48013 -21.97673 -21.47708 -20.99138 -19.82139 -18.17985 -17.19135 -16.91298 -16.46375 -15.89606 -15.82043 -15.48819 -15.28332 -14.84772 -14.68226 -14.34062 -14.25490 -13.68207 -13.35525 -13.24459 -13.13788 -13.10122 -12.87030 -12.79757 -12.71134 -12.53283 -12.39592 -11.94681 -11.85506 -11.59962 -11.40548 -11.23308 -11.13566 -10.92410 -10.83241 -10.82736 -10.60068 -10.07610 -9.75757 -9.51117 -8.91843 -8.84042 -8.70475 -8.39805 -8.23453 -7.85061 -6.94685 -5.78067 -3.07267 1.35524 1.48896 1.98159 2.76448 2.94255 3.38839 3.42712 3.49730 3.51278 3.86036 3.98422 4.59527 4.68384 4.84415 4.88380 4.90899 5.02455 5.05115 5.11397 5.20412 5.23208 5.25702 5.37673 5.43567 5.51397 5.56487 5.60150 5.62783 5.72580 5.75767 5.88966 5.92756 6.02307 6.04318 6.06610 6.13081 6.16655 6.29115 6.49455 6.52315 6.57048 6.62551 6.73650 6.85258 6.99992 7.07638 7.10402 7.32890 7.45687 7.71160 7.79125 8.39969 8.62743 9.51796 10.05983 10.41537 11.44491 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008052 B = 0.003980 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3476.613455 B = 7033.490113 C = 9689.678796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.238 4.238 4 C 0.600 3.400 5 O -0.561 6.561 6 N -0.596 5.596 7 C 0.085 3.915 8 C 0.128 3.872 9 N -0.729 5.729 10 C -0.235 4.235 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.932 5.932 14 Si 0.905 3.095 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.156 3.844 19 C -0.100 4.100 20 C -0.095 4.095 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.105 4.105 25 C -0.171 4.171 26 C -0.025 4.025 27 N -0.448 5.448 28 C 0.070 3.930 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.037 0.963 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.186 0.814 46 H 0.166 0.834 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -1.428 -7.595 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.248 4.248 4 C 0.392 3.608 5 O -0.442 6.442 6 N -0.327 5.327 7 C -0.038 4.038 8 C 0.000 4.000 9 N -0.374 5.374 10 C -0.366 4.366 11 H 0.089 0.911 12 C -0.208 4.208 13 N -0.581 5.581 14 Si 0.736 3.264 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.034 3.966 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.124 4.124 25 C -0.193 4.193 26 C -0.150 4.150 27 N -0.125 5.125 28 C -0.072 4.072 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.203 0.797 46 H 0.184 0.816 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.448 -1.648 -7.316 19.914 hybrid contribution 1.137 -0.342 0.452 1.270 sum -17.312 -1.990 -6.864 18.729 Atomic orbital electron populations 1.20520 0.87603 1.03951 1.02766 1.20181 0.93339 0.85375 1.03206 1.20043 0.93578 0.91602 1.19627 1.17348 0.84506 0.84160 0.74761 1.90623 1.17313 1.84201 1.52060 1.47623 1.07720 1.05259 1.72081 1.22415 0.79372 1.02924 0.99110 1.21228 0.86500 0.98338 0.93956 1.42258 1.03512 1.84794 1.06869 1.19232 0.90676 1.39495 0.87219 0.91132 1.24705 0.96921 1.02691 0.96438 1.69661 1.12892 1.55687 1.19878 0.86145 0.80615 0.77400 0.82206 1.20574 1.21919 1.21897 1.20330 1.00983 0.82338 0.92997 1.20314 0.94117 0.98811 0.96935 1.21305 0.96029 0.97762 0.96236 1.21143 0.99549 0.99797 0.94164 1.21124 0.94057 0.99532 0.99349 1.21104 0.96206 1.00878 0.96272 1.21142 0.99272 0.98336 0.93625 1.23519 0.97225 0.93911 1.04672 1.21890 0.84798 0.96843 1.11488 1.43566 1.06256 1.05694 1.56988 1.22023 1.01328 0.80690 1.03194 0.91144 0.92317 0.88001 0.88364 0.90582 0.96104 0.94525 0.78263 0.93576 0.89460 0.89336 0.85063 0.86464 0.86547 0.86266 0.85960 0.79731 0.81631 0.90994 0.90082 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.36 36.01 0.34 -0.74 16 2 C 0.10 1.41 6.89 -81.88 -0.56 0.84 16 3 C -0.24 -4.04 5.99 -103.35 -0.62 -4.66 16 4 C 0.60 10.36 7.56 -12.59 -0.10 10.27 16 5 O -0.56 -10.05 12.94 5.26 0.07 -9.98 16 6 N -0.60 -9.49 2.49 -176.39 -0.44 -9.93 16 7 C 0.08 1.41 4.99 -4.04 -0.02 1.39 16 8 C 0.13 2.55 5.30 -4.04 -0.02 2.53 16 9 N -0.73 -17.54 5.10 -59.91 -0.31 -17.84 16 10 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 11 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 12 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 13 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 14 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 C 0.16 2.19 5.47 -5.19 -0.03 2.16 16 19 C -0.10 -1.36 5.42 -104.62 -0.57 -1.93 16 20 C -0.09 -1.28 9.43 -39.58 -0.37 -1.65 16 21 C -0.13 -1.52 10.05 -39.59 -0.40 -1.92 16 22 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 23 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.11 -1.32 9.68 -39.58 -0.38 -1.71 16 25 C -0.17 -2.93 7.38 -37.50 -0.28 -3.21 16 26 C -0.03 -0.38 11.34 -16.83 -0.19 -0.57 16 27 N -0.45 -5.87 3.09 -119.88 -0.37 -6.24 16 28 C 0.07 0.57 10.60 59.85 0.63 1.21 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.54 7.59 -51.93 -0.39 0.15 16 31 H 0.10 1.38 6.33 -51.93 -0.33 1.05 16 32 H 0.10 1.68 4.71 -51.93 -0.24 1.44 16 33 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.78 6.18 -51.93 -0.32 0.46 16 36 H 0.38 9.58 7.67 -40.82 -0.31 9.26 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 39 H 0.09 1.25 7.53 -51.93 -0.39 0.86 16 40 H 0.13 1.87 6.83 -52.49 -0.36 1.51 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.19 3.47 3.23 -52.49 -0.17 3.30 16 46 H 0.17 2.20 8.06 -52.48 -0.42 1.77 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.53 7.51 -51.93 -0.39 0.14 16 49 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -32.36 395.11 -10.09 -42.45 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.09 Total: 13.64 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.61 Total: -8.56 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.39 Total: -60.51 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.36 -10.09 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569869947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.910 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds