Wall clock time and date at job start Wed Apr 1 2020 00:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36764 * 125.80327 * 2 1 4 4 C 1.47267 * 126.94178 * 359.97224 * 3 2 1 5 5 O 1.21625 * 119.99997 * 8.85027 * 4 3 2 6 6 N 1.34778 * 120.00153 * 188.85132 * 4 3 2 7 7 C 1.46503 * 120.00044 * 358.64080 * 6 4 3 8 8 C 1.53000 * 109.47066 * 277.05472 * 7 6 4 9 9 N 1.46503 * 109.47066 * 180.02562 * 8 7 6 10 10 C 1.36935 * 119.99948 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00411 * 359.97438 * 10 9 8 12 12 C 1.38810 * 119.99977 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00061 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00176 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47325 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47290 * 119.99721 * 14 12 10 17 17 H 1.48502 * 109.47557 * 239.99838 * 14 12 10 18 18 C 1.46502 * 120.00123 * 178.64754 * 6 4 3 19 19 C 1.50699 * 109.46393 * 274.80237 * 18 6 4 20 20 C 1.38238 * 120.00409 * 85.12727 * 19 18 6 21 21 C 1.38232 * 120.00106 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00110 * 0.06371 * 21 20 19 23 23 C 1.38231 * 120.00176 * 359.91257 * 22 21 20 24 24 C 1.38237 * 119.99831 * 0.04338 * 23 22 21 25 25 C 1.46682 * 106.11857 * 179.71357 * 3 2 1 26 26 C 1.34486 * 106.33146 * 0.25861 * 25 3 2 27 27 N 1.34666 * 125.80263 * 180.15738 * 2 1 3 28 28 C 1.46497 * 124.84731 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.46421 * 90.00133 * 1 2 3 30 30 H 1.08996 * 109.47231 * 210.00288 * 1 2 3 31 31 H 1.08998 * 109.46852 * 330.00882 * 1 2 3 32 32 H 1.08997 * 109.46961 * 37.04964 * 7 6 4 33 33 H 1.08999 * 109.46968 * 157.05368 * 7 6 4 34 34 H 1.08998 * 109.47189 * 299.99966 * 8 7 6 35 35 H 1.08999 * 109.47312 * 60.00106 * 8 7 6 36 36 H 0.97001 * 119.99599 * 359.97438 * 9 8 7 37 37 H 0.97005 * 120.00483 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47360 * 154.80089 * 18 6 4 39 39 H 1.08997 * 109.47363 * 34.79662 * 18 6 4 40 40 H 1.07995 * 119.99503 * 359.69273 * 20 19 18 41 41 H 1.07998 * 120.00277 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.00278 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00606 * 180.02562 * 23 22 21 44 44 H 1.08007 * 119.99926 * 180.02562 * 24 23 22 45 45 H 1.07998 * 126.83655 * 180.22751 * 25 3 2 46 46 H 1.08007 * 125.57120 * 180.02562 * 26 25 3 47 47 H 1.08996 * 109.47421 * 270.30924 * 28 27 2 48 48 H 1.08999 * 109.47135 * 30.31046 * 28 27 2 49 49 H 1.09001 * 109.47098 * 150.30960 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0006 5 8 0.6959 2.7877 0.1609 6 7 2.7718 3.5012 -0.1801 7 6 4.1906 3.1752 -0.3449 8 6 4.8317 2.9781 1.0303 9 7 6.2506 2.6526 0.8655 10 6 7.0345 2.4312 1.9661 11 1 6.6070 2.4968 2.9558 12 6 8.3790 2.1233 1.8100 13 7 8.9002 2.0438 0.6041 14 14 9.4486 1.8219 3.3114 15 1 8.6290 1.9695 4.5409 16 1 10.0086 0.4477 3.2525 17 1 10.5587 2.8081 3.3346 18 6 2.3331 4.8987 -0.2103 19 6 1.8872 5.2550 -1.6050 20 6 0.5937 4.9812 -2.0083 21 6 0.1845 5.3085 -3.2875 22 6 1.0693 5.9085 -4.1638 23 6 2.3627 6.1828 -3.7605 24 6 2.7716 5.8563 -2.4810 25 6 3.6882 0.6151 0.0070 26 6 3.6096 -0.7274 0.0048 27 7 2.2948 -1.0922 -0.0030 28 6 1.8094 -2.4744 -0.0073 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 4.2875 2.2579 -0.9257 33 1 4.6925 3.9902 -0.8664 34 1 4.7348 3.8953 1.6111 35 1 4.3298 2.1631 1.5517 36 1 6.6344 2.5933 -0.0234 37 1 9.8397 1.8283 0.4949 38 1 3.1599 5.5455 0.0833 39 1 1.5025 5.0338 0.4824 40 1 -0.0959 4.5074 -1.3254 41 1 -0.8259 5.0942 -3.6027 42 1 0.7496 6.1647 -5.1631 43 1 3.0539 6.6519 -4.4450 44 1 3.7821 6.0710 -2.1656 45 1 4.5890 1.2109 0.0124 46 1 4.4498 -1.4060 0.0090 47 1 1.6834 -2.8185 1.0192 48 1 0.8522 -2.5217 -0.5265 49 1 2.5315 -3.1115 -0.5180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569869947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:21 Heat of formation + Delta-G solvation = 62.739677 kcal Electronic energy + Delta-G solvation = -30046.347594 eV Core-core repulsion = 26167.988941 eV Total energy + Delta-G solvation = -3878.358653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.40395 -40.78642 -39.56046 -37.73206 -35.95087 -34.18352 -33.16753 -32.47640 -32.32017 -31.73802 -29.48902 -28.31276 -27.07388 -26.46601 -25.55777 -23.53207 -23.31504 -22.79999 -22.12980 -20.96712 -19.57687 -18.91634 -17.97197 -17.64883 -17.15899 -17.06738 -16.55386 -16.46038 -16.22801 -15.85656 -15.64938 -15.57424 -15.16551 -14.93931 -14.58335 -14.24447 -14.07289 -14.00073 -13.83528 -13.78714 -13.43687 -13.38196 -13.12633 -13.02311 -12.96622 -12.82176 -12.76721 -12.64392 -12.37953 -12.23587 -12.05555 -11.89720 -11.83715 -11.76650 -10.95316 -10.79112 -9.78840 -9.75447 -9.63198 -9.42123 -9.03774 -8.95054 -7.91872 -5.20877 0.39517 0.54114 0.79581 1.49571 1.50500 1.54672 1.60036 1.93136 2.21140 2.55895 2.61919 2.99378 3.42057 3.69563 3.88402 3.89465 4.00375 4.03609 4.07948 4.15029 4.19384 4.27600 4.32607 4.33528 4.36033 4.44378 4.47099 4.60705 4.62385 4.68116 4.73712 4.76574 4.80290 4.81819 4.98938 5.05980 5.12334 5.13255 5.17763 5.21426 5.39030 5.53105 5.59863 5.63110 5.64779 5.75729 5.88168 6.15079 6.15768 6.29053 6.41904 6.49590 7.32549 7.37334 8.06737 8.34536 9.30935 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008052 B = 0.003980 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3476.613455 B = 7033.490113 C = 9689.678796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 C -0.273 4.273 4 C 0.593 3.407 5 O -0.574 6.574 6 N -0.594 5.594 7 C 0.103 3.897 8 C 0.141 3.859 9 N -0.733 5.733 10 C -0.240 4.240 11 H 0.069 0.931 12 C -0.064 4.064 13 N -0.963 5.963 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.292 1.292 17 H -0.293 1.293 18 C 0.155 3.845 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.199 4.199 26 C -0.025 4.025 27 N -0.440 5.440 28 C 0.059 3.941 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.015 0.985 35 H 0.026 0.974 36 H 0.378 0.622 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.128 0.872 45 H 0.165 0.835 46 H 0.181 0.819 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.868 -2.329 -8.309 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.020 4.020 3 C -0.283 4.283 4 C 0.386 3.614 5 O -0.457 6.457 6 N -0.325 5.325 7 C -0.020 4.020 8 C 0.013 3.987 9 N -0.377 5.377 10 C -0.372 4.372 11 H 0.087 0.913 12 C -0.257 4.257 13 N -0.613 5.613 14 Si 0.796 3.204 15 H -0.196 1.196 16 H -0.219 1.219 17 H -0.220 1.220 18 C 0.033 3.967 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.222 4.222 26 C -0.151 4.151 27 N -0.116 5.116 28 C -0.080 4.080 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.211 0.789 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.146 0.854 45 H 0.182 0.818 46 H 0.198 0.802 47 H 0.104 0.896 48 H 0.121 0.879 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.529 -2.554 -8.019 21.265 hybrid contribution 1.369 -0.100 0.654 1.521 sum -18.160 -2.654 -7.365 19.775 Atomic orbital electron populations 1.20530 0.85566 1.04485 1.03672 1.20603 0.94609 0.85267 1.01502 1.20210 0.94000 0.92121 1.21982 1.17568 0.84517 0.84705 0.74641 1.90603 1.17682 1.84504 1.52875 1.47627 1.07052 1.05954 1.71818 1.22115 0.79763 1.03154 0.96995 1.21162 0.84550 0.97206 0.95777 1.42306 1.04840 1.84648 1.05882 1.19509 0.91223 1.38536 0.87928 0.91347 1.25409 0.98105 1.03275 0.98926 1.69793 1.12909 1.56996 1.21612 0.85176 0.78770 0.76887 0.79518 1.19643 1.21888 1.22042 1.20411 1.01061 0.81460 0.93738 1.20264 0.94569 0.99887 0.96712 1.21296 0.95934 0.98713 0.97063 1.21411 1.00763 0.99368 0.93513 1.21484 0.93643 0.98378 1.00412 1.21436 0.96942 1.00312 0.96048 1.21303 0.99461 0.98541 0.94210 1.23359 0.96832 0.95045 1.06982 1.22087 0.86225 0.96385 1.10428 1.43824 1.05323 1.07281 1.55184 1.22421 1.02840 0.78010 1.04766 0.89922 0.89224 0.89950 0.88635 0.89713 0.96722 0.95599 0.78949 0.93929 0.88512 0.90007 0.86536 0.84532 0.83684 0.84013 0.85381 0.81802 0.80159 0.89593 0.87877 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 9.36 71.24 0.67 -1.21 16 2 C 0.10 2.82 6.89 41.78 0.29 3.11 16 3 C -0.27 -9.42 5.99 -19.04 -0.11 -9.53 16 4 C 0.59 21.12 7.56 86.62 0.65 21.78 16 5 O -0.57 -21.24 12.94 -4.11 -0.05 -21.30 16 6 N -0.59 -19.58 2.49 -830.21 -2.06 -21.64 16 7 C 0.10 3.55 4.99 86.38 0.43 3.98 16 8 C 0.14 5.78 5.30 86.38 0.46 6.24 16 9 N -0.73 -36.09 5.10 -343.45 -1.75 -37.84 16 10 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 11 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 12 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 13 N -0.96 -56.85 13.06 21.65 0.28 -56.57 16 14 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 C 0.16 4.49 5.47 85.63 0.47 4.96 16 19 C -0.11 -3.10 5.42 -19.86 -0.11 -3.21 16 20 C -0.11 -3.04 9.43 22.27 0.21 -2.83 16 21 C -0.13 -2.99 10.05 22.27 0.22 -2.76 16 22 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 24 C -0.12 -2.87 9.68 22.27 0.22 -2.66 16 25 C -0.20 -7.02 7.38 23.62 0.17 -6.85 16 26 C -0.03 -0.74 11.34 83.12 0.94 0.20 16 27 N -0.44 -10.80 3.09 -533.20 -1.65 -12.44 16 28 C 0.06 0.79 10.60 127.77 1.35 2.15 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.09 1.39 7.59 -2.39 -0.02 1.37 16 31 H 0.08 2.19 6.33 -2.39 -0.02 2.18 16 32 H 0.10 3.42 4.71 -2.39 -0.01 3.41 16 33 H 0.08 2.74 8.02 -2.39 -0.02 2.72 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.03 1.15 6.18 -2.39 -0.01 1.13 16 36 H 0.38 19.39 7.67 -92.71 -0.71 18.68 16 37 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 38 H 0.10 2.53 7.95 -2.39 -0.02 2.51 16 39 H 0.08 2.44 7.53 -2.39 -0.02 2.42 16 40 H 0.12 3.46 6.83 -2.91 -0.02 3.44 16 41 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 45 H 0.17 6.42 3.23 -2.91 -0.01 6.41 16 46 H 0.18 4.64 8.06 -2.91 -0.02 4.62 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.10 0.95 7.51 -2.39 -0.02 0.94 16 49 H 0.10 1.04 8.13 -2.39 -0.02 1.02 16 Total: -1.00 -70.38 395.11 4.68 -65.71 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: 0.26 Total: 43.43 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 7.62 Total: -6.85 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -5.18 Total: -128.49 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.38 4.68 -65.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569869947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.445 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds