Wall clock time and date at job start Wed Apr 1 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47029 * 2 1 4 4 F 1.39901 * 109.46700 * 240.00781 * 2 1 3 5 5 C 1.50693 * 109.47261 * 120.00668 * 2 1 3 6 6 O 1.21282 * 120.00218 * 354.99926 * 5 2 1 7 7 N 1.34779 * 120.00168 * 174.99875 * 5 2 1 8 8 C 1.46815 * 119.67971 * 359.97438 * 7 5 2 9 9 C 1.53421 * 107.74804 * 232.29390 * 8 7 5 10 10 C 1.52770 * 108.54814 * 302.33107 * 9 8 7 11 11 C 1.52984 * 110.66334 * 63.54299 * 10 9 8 12 12 H 1.09002 * 111.92861 * 69.67880 * 11 10 9 13 13 C 1.44280 * 119.48591 * 180.48348 * 7 5 2 14 14 H 1.08997 * 109.74737 * 11.47310 * 13 7 5 15 15 C 1.53928 * 111.12693 * 249.39354 * 13 7 5 16 16 C 1.54226 * 104.68999 * 216.17365 * 15 13 7 17 17 N 1.48549 * 107.24756 * 359.47164 * 16 15 13 18 18 C 1.46899 * 111.55878 * 145.49403 * 17 16 15 19 19 C 1.50698 * 109.47564 * 52.90051 * 18 17 16 20 20 O 1.21293 * 119.99827 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00366 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99825 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99987 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99685 * 179.97438 * 22 21 19 25 25 N 1.31421 * 120.00082 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00049 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47171 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47089 * 120.00046 * 26 24 22 29 29 H 1.48499 * 109.47133 * 240.00083 * 26 24 22 30 30 H 1.09001 * 109.46827 * 299.99212 * 1 2 3 31 31 H 1.08995 * 109.47524 * 59.99833 * 1 2 3 32 32 H 1.09004 * 109.46790 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46962 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47614 * 300.00732 * 3 2 1 35 35 H 1.09001 * 109.46672 * 60.00693 * 3 2 1 36 36 H 1.09005 * 109.79790 * 112.73911 * 8 7 5 37 37 H 1.08994 * 109.85574 * 351.89420 * 8 7 5 38 38 H 1.08998 * 109.62476 * 182.61040 * 9 8 7 39 39 H 1.09004 * 109.77869 * 62.14105 * 9 8 7 40 40 H 1.08995 * 109.23848 * 303.23101 * 10 9 8 41 41 H 1.09003 * 109.20701 * 183.82556 * 10 9 8 42 42 H 1.08994 * 110.39344 * 334.97864 * 15 13 7 43 43 H 1.09001 * 110.39275 * 97.37184 * 15 13 7 44 44 H 1.08999 * 109.96890 * 118.32338 * 16 15 13 45 45 H 1.09005 * 109.96855 * 239.57533 * 16 15 13 46 46 H 1.09004 * 109.46935 * 172.89821 * 18 17 16 47 47 H 1.09006 * 109.47520 * 292.89663 * 18 17 16 48 48 H 0.97000 * 120.00070 * 359.97438 * 21 19 18 49 49 H 0.96997 * 120.00182 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2303 6 8 1.2481 -1.0916 2.0733 7 7 3.3533 -0.9225 1.3940 8 6 4.2965 -0.4588 0.3689 9 6 5.1827 -1.6481 -0.0235 10 6 5.8835 -2.1667 1.2311 11 6 4.8628 -2.7010 2.2376 12 1 4.3950 -3.6231 1.8926 13 6 3.8212 -1.6132 2.5711 14 1 2.9766 -2.0582 3.0971 15 6 4.5858 -0.6596 3.5068 16 6 5.7194 -1.5202 4.1009 17 7 5.5802 -2.8855 3.5323 18 6 6.8889 -3.5193 3.3237 19 6 7.6822 -3.4670 4.6039 20 8 7.2046 -2.9519 5.5927 21 7 8.9228 -3.9917 4.6499 22 6 9.6447 -3.9436 5.8145 23 1 9.2194 -3.4849 6.6949 24 6 10.9234 -4.4850 5.8620 25 7 11.4408 -5.0436 4.7908 26 14 11.9068 -4.4201 7.4489 27 1 11.1053 -3.7444 8.5006 28 1 12.2334 -5.8013 7.8856 29 1 13.1636 -3.6625 7.2218 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 4.9136 0.3446 0.7714 37 1 3.7492 -0.1022 -0.5036 38 1 5.9269 -1.3255 -0.7516 39 1 4.5688 -2.4395 -0.4536 40 1 6.4482 -1.3546 1.6888 41 1 6.5681 -2.9684 0.9539 42 1 4.9992 0.1760 2.9421 43 1 3.9297 -0.2969 4.2981 44 1 6.6876 -1.1073 3.8177 45 1 5.6318 -1.5530 5.1869 46 1 6.7461 -4.5585 3.0270 47 1 7.4290 -2.9885 2.5396 48 1 9.3050 -4.4034 3.8591 49 1 12.3336 -5.4212 4.8239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569901242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:05 Heat of formation + Delta-G solvation = -94.879689 kcal Electronic energy + Delta-G solvation = -31584.473581 eV Core-core repulsion = 27268.510814 eV Total energy + Delta-G solvation = -4315.962767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.44132 -41.16184 -39.31887 -37.90850 -35.89280 -34.16443 -33.86521 -33.18793 -31.38703 -30.89412 -29.21975 -27.90872 -26.65593 -25.77982 -24.37692 -23.40400 -22.73528 -20.99017 -20.29305 -19.01900 -18.90082 -18.00807 -17.81200 -16.84093 -16.33312 -16.06015 -15.72510 -15.68056 -15.17024 -14.91916 -14.68168 -14.53473 -14.06361 -13.93196 -13.79330 -13.64303 -13.32737 -13.23201 -12.97978 -12.82241 -12.59844 -12.55026 -12.50054 -12.29211 -12.11755 -12.02280 -11.65720 -11.56117 -11.44527 -11.32578 -11.16142 -10.99960 -10.90122 -10.76976 -10.35376 -10.30990 -10.23874 -9.93236 -9.52082 -8.88566 -8.38746 -7.99655 -7.89109 -6.43409 -3.84137 2.10515 2.54156 3.15024 3.25838 3.32993 3.71675 3.88115 3.95872 4.03828 4.15474 4.22652 4.29964 4.48995 4.62203 4.65443 4.75332 4.86259 4.99496 5.05386 5.09846 5.16674 5.18471 5.22250 5.24490 5.30932 5.34444 5.42842 5.47536 5.54321 5.59954 5.70417 5.73000 5.74703 5.85216 5.85265 5.96569 6.02039 6.12522 6.24222 6.30515 6.36987 6.62185 7.00937 7.17580 7.23723 7.53983 7.73530 8.04567 8.59733 9.16481 9.52345 10.03828 10.74383 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.031321 B = 0.002347 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.751380 B =11925.857912 C =12304.285777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 C -0.182 4.182 4 F -0.192 7.192 5 C 0.499 3.501 6 O -0.520 6.520 7 N -0.584 5.584 8 C 0.086 3.914 9 C -0.128 4.128 10 C -0.153 4.153 11 C 0.060 3.940 12 H 0.099 0.901 13 C 0.140 3.860 14 H 0.111 0.889 15 C -0.142 4.142 16 C 0.055 3.945 17 N -0.491 5.491 18 C 0.032 3.968 19 C 0.442 3.558 20 O -0.581 6.581 21 N -0.563 5.563 22 C -0.297 4.297 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.074 11.703 -15.775 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 C -0.240 4.240 4 F -0.172 7.172 5 C 0.284 3.716 6 O -0.396 6.396 7 N -0.315 5.315 8 C -0.036 4.036 9 C -0.167 4.167 10 C -0.192 4.192 11 C -0.049 4.049 12 H 0.117 0.883 13 C 0.036 3.964 14 H 0.129 0.871 15 C -0.181 4.181 16 C -0.072 4.072 17 N -0.214 5.214 18 C -0.100 4.100 19 C 0.227 3.773 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.864 11.383 -14.304 24.871 hybrid contribution 1.628 0.104 -0.475 1.699 sum -15.236 11.487 -14.780 24.135 Atomic orbital electron populations 1.22162 0.90679 1.04701 1.03943 1.21169 0.96992 0.92971 0.80687 1.22622 1.03403 0.93052 1.04898 1.92865 1.89746 1.82789 1.51812 1.20855 0.82575 0.80003 0.88172 1.90737 1.54830 1.49949 1.44054 1.47355 1.05820 1.56412 1.21882 1.22327 0.92412 0.97320 0.91503 1.21818 0.98998 0.97941 0.97899 1.22213 0.99028 1.01691 0.96269 1.23103 0.94067 0.97852 0.89927 0.88330 1.21229 0.98072 0.92203 0.84921 0.87071 1.22790 0.98254 0.98182 0.98853 1.22930 0.95565 0.86519 1.02228 1.64873 1.17735 1.19750 1.19075 1.22177 0.89840 1.00652 0.97283 1.19742 0.83080 0.84788 0.89662 1.90501 1.70152 1.49056 1.36778 1.41855 1.12935 1.51643 1.13533 1.19743 0.96366 1.35734 0.90853 0.87865 1.25265 0.97274 0.96732 0.98720 1.69621 1.17369 1.38870 1.28452 0.85805 0.79234 0.77948 0.81396 1.19222 1.20722 1.20793 0.89741 0.90639 0.90625 0.90117 0.89869 0.89842 0.90988 0.87902 0.90405 0.90990 0.91227 0.90646 0.91605 0.90678 0.94059 0.87876 0.89171 0.92458 0.77496 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.23 37.16 0.31 -0.87 16 2 C 0.10 0.88 1.20 -91.77 -0.11 0.77 16 3 C -0.18 -1.06 8.53 37.16 0.32 -0.74 16 4 F -0.19 -1.76 14.68 2.25 0.03 -1.73 16 5 C 0.50 5.79 6.77 -10.99 -0.07 5.72 16 6 O -0.52 -7.74 15.28 5.56 0.08 -7.66 16 7 N -0.58 -6.37 2.68 -165.90 -0.44 -6.82 16 8 C 0.09 0.73 4.39 -3.65 -0.02 0.71 16 9 C -0.13 -1.12 6.10 -26.63 -0.16 -1.29 16 10 C -0.15 -1.71 3.56 -26.86 -0.10 -1.81 16 11 C 0.06 0.79 3.64 -65.81 -0.24 0.55 16 12 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 13 C 0.14 1.82 3.09 -67.97 -0.21 1.61 16 14 H 0.11 1.68 6.91 -51.93 -0.36 1.33 16 15 C -0.14 -1.87 6.13 -25.61 -0.16 -2.03 16 16 C 0.06 0.92 4.38 -2.27 -0.01 0.91 16 17 N -0.49 -8.20 5.25 -223.27 -1.17 -9.37 16 18 C 0.03 0.57 4.95 -4.98 -0.02 0.54 16 19 C 0.44 10.29 7.38 -10.99 -0.08 10.21 16 20 O -0.58 -15.33 13.44 5.55 0.07 -15.26 16 21 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 26 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.08 0.62 8.05 -51.93 -0.42 0.21 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.44 5.39 -51.93 -0.28 0.16 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.55 7.43 -51.93 -0.39 0.17 16 37 H 0.10 0.75 3.75 -51.93 -0.19 0.55 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.84 6.39 -51.93 -0.33 0.51 16 41 H 0.07 0.84 6.84 -51.93 -0.36 0.49 16 42 H 0.07 0.77 7.15 -51.93 -0.37 0.40 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.72 7.13 -51.93 -0.37 0.35 16 45 H 0.10 2.03 6.82 -51.93 -0.35 1.68 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.06 0.91 5.55 -51.93 -0.29 0.62 16 48 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 49 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -31.98 372.12 -8.32 -40.30 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.35 Total: 10.43 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.80 Total: 6.40 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.95 Total: -54.07 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.16 Total: -22.91 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.98 -8.32 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569901242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.576 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds