Wall clock time and date at job start Wed Apr 1 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47029 * 2 1 4 4 F 1.39901 * 109.46700 * 240.00781 * 2 1 3 5 5 C 1.50693 * 109.47261 * 120.00668 * 2 1 3 6 6 O 1.21282 * 120.00218 * 354.99926 * 5 2 1 7 7 N 1.34779 * 120.00168 * 174.99875 * 5 2 1 8 8 C 1.46815 * 119.67971 * 359.97438 * 7 5 2 9 9 C 1.53421 * 107.74804 * 232.29390 * 8 7 5 10 10 C 1.52770 * 108.54814 * 302.33107 * 9 8 7 11 11 C 1.52984 * 110.66334 * 63.54299 * 10 9 8 12 12 H 1.09002 * 111.92861 * 69.67880 * 11 10 9 13 13 C 1.44280 * 119.48591 * 180.48348 * 7 5 2 14 14 H 1.08997 * 109.74737 * 11.47310 * 13 7 5 15 15 C 1.53928 * 111.12693 * 249.39354 * 13 7 5 16 16 C 1.54226 * 104.68999 * 216.17365 * 15 13 7 17 17 N 1.48549 * 107.24756 * 359.47164 * 16 15 13 18 18 C 1.46899 * 111.55878 * 145.49403 * 17 16 15 19 19 C 1.50698 * 109.47564 * 52.90051 * 18 17 16 20 20 O 1.21293 * 119.99827 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00366 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99825 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99987 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99685 * 179.97438 * 22 21 19 25 25 N 1.31421 * 120.00082 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00049 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47171 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47089 * 120.00046 * 26 24 22 29 29 H 1.48499 * 109.47133 * 240.00083 * 26 24 22 30 30 H 1.09001 * 109.46827 * 299.99212 * 1 2 3 31 31 H 1.08995 * 109.47524 * 59.99833 * 1 2 3 32 32 H 1.09004 * 109.46790 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46962 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47614 * 300.00732 * 3 2 1 35 35 H 1.09001 * 109.46672 * 60.00693 * 3 2 1 36 36 H 1.09005 * 109.79790 * 112.73911 * 8 7 5 37 37 H 1.08994 * 109.85574 * 351.89420 * 8 7 5 38 38 H 1.08998 * 109.62476 * 182.61040 * 9 8 7 39 39 H 1.09004 * 109.77869 * 62.14105 * 9 8 7 40 40 H 1.08995 * 109.23848 * 303.23101 * 10 9 8 41 41 H 1.09003 * 109.20701 * 183.82556 * 10 9 8 42 42 H 1.08994 * 110.39344 * 334.97864 * 15 13 7 43 43 H 1.09001 * 110.39275 * 97.37184 * 15 13 7 44 44 H 1.08999 * 109.96890 * 118.32338 * 16 15 13 45 45 H 1.09005 * 109.96855 * 239.57533 * 16 15 13 46 46 H 1.09004 * 109.46935 * 172.89821 * 18 17 16 47 47 H 1.09006 * 109.47520 * 292.89663 * 18 17 16 48 48 H 0.97000 * 120.00070 * 359.97438 * 21 19 18 49 49 H 0.96997 * 120.00182 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2303 6 8 1.2481 -1.0916 2.0733 7 7 3.3533 -0.9225 1.3940 8 6 4.2965 -0.4588 0.3689 9 6 5.1827 -1.6481 -0.0235 10 6 5.8835 -2.1667 1.2311 11 6 4.8628 -2.7010 2.2376 12 1 4.3950 -3.6231 1.8926 13 6 3.8212 -1.6132 2.5711 14 1 2.9766 -2.0582 3.0971 15 6 4.5858 -0.6596 3.5068 16 6 5.7194 -1.5202 4.1009 17 7 5.5802 -2.8855 3.5323 18 6 6.8889 -3.5193 3.3237 19 6 7.6822 -3.4670 4.6039 20 8 7.2046 -2.9519 5.5927 21 7 8.9228 -3.9917 4.6499 22 6 9.6447 -3.9436 5.8145 23 1 9.2194 -3.4849 6.6949 24 6 10.9234 -4.4850 5.8620 25 7 11.4408 -5.0436 4.7908 26 14 11.9068 -4.4201 7.4489 27 1 11.1053 -3.7444 8.5006 28 1 12.2334 -5.8013 7.8856 29 1 13.1636 -3.6625 7.2218 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 4.9136 0.3446 0.7714 37 1 3.7492 -0.1022 -0.5036 38 1 5.9269 -1.3255 -0.7516 39 1 4.5688 -2.4395 -0.4536 40 1 6.4482 -1.3546 1.6888 41 1 6.5681 -2.9684 0.9539 42 1 4.9992 0.1760 2.9421 43 1 3.9297 -0.2969 4.2981 44 1 6.6876 -1.1073 3.8177 45 1 5.6318 -1.5530 5.1869 46 1 6.7461 -4.5585 3.0270 47 1 7.4290 -2.9885 2.5396 48 1 9.3050 -4.4034 3.8591 49 1 12.3336 -5.4212 4.8239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569901242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:04 Heat of formation + Delta-G solvation = -117.652587 kcal Electronic energy + Delta-G solvation = -31585.461088 eV Core-core repulsion = 27268.510814 eV Total energy + Delta-G solvation = -4316.950274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.12212 -42.19281 -40.58291 -39.50459 -37.01009 -35.90474 -34.78009 -34.13471 -33.30096 -32.20840 -30.25221 -28.55817 -28.13867 -26.68405 -26.12883 -24.31282 -23.59279 -22.31178 -21.28979 -20.73005 -19.82098 -19.76531 -18.82493 -17.78682 -17.67110 -17.04848 -16.94111 -16.71779 -16.47197 -16.09726 -15.93347 -15.80178 -15.55976 -15.20009 -15.02509 -14.63221 -14.49679 -14.14663 -13.90120 -13.72634 -13.60763 -13.51983 -13.38845 -13.28509 -13.18719 -13.07795 -12.96734 -12.92129 -12.61330 -12.49900 -12.41400 -12.36190 -12.12342 -12.08639 -11.88894 -11.66735 -11.49098 -11.35801 -10.80283 -10.28040 -10.01911 -9.76675 -9.27238 -8.47868 -5.96211 1.22511 1.35150 1.40760 1.54581 1.67169 2.03009 2.27702 2.79989 2.98167 3.19024 3.24836 3.38310 3.42762 3.57493 3.70368 3.75228 3.85301 3.90623 3.97163 4.05947 4.17673 4.29562 4.38857 4.43806 4.49150 4.50285 4.53620 4.58683 4.63651 4.65466 4.68580 4.84589 4.89404 4.91600 4.96512 5.04542 5.08051 5.10992 5.15204 5.21264 5.33350 5.40214 5.40757 5.82164 5.88638 6.05664 6.16329 6.59265 6.84970 7.11902 7.54375 8.10198 8.69773 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.031321 B = 0.002347 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.751380 B =11925.857912 C =12304.285777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.107 3.893 3 C -0.179 4.179 4 F -0.194 7.194 5 C 0.491 3.509 6 O -0.562 6.562 7 N -0.581 5.581 8 C 0.082 3.918 9 C -0.122 4.122 10 C -0.150 4.150 11 C 0.064 3.936 12 H 0.100 0.900 13 C 0.148 3.852 14 H 0.084 0.916 15 C -0.128 4.128 16 C 0.063 3.937 17 N -0.513 5.513 18 C 0.047 3.953 19 C 0.439 3.561 20 O -0.616 6.616 21 N -0.572 5.572 22 C -0.330 4.330 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.275 1.275 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.396 0.604 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 12.911 -18.262 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.086 3.914 3 C -0.236 4.236 4 F -0.174 7.174 5 C 0.278 3.722 6 O -0.440 6.440 7 N -0.311 5.311 8 C -0.038 4.038 9 C -0.160 4.160 10 C -0.188 4.188 11 C -0.044 4.044 12 H 0.118 0.882 13 C 0.042 3.958 14 H 0.102 0.898 15 C -0.167 4.167 16 C -0.065 4.065 17 N -0.237 5.237 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.502 6.502 21 N -0.209 5.209 22 C -0.460 4.460 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.125 0.875 47 H 0.100 0.900 48 H 0.230 0.770 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.553 12.593 -16.845 26.764 hybrid contribution 1.472 -0.295 0.301 1.531 sum -15.081 12.298 -16.544 25.542 Atomic orbital electron populations 1.22194 0.90134 1.04025 1.05149 1.21223 0.97405 0.93917 0.78861 1.22656 1.03864 0.90930 1.06191 1.92861 1.89806 1.83098 1.51665 1.21567 0.82322 0.79452 0.88847 1.90718 1.55855 1.51627 1.45804 1.47425 1.06279 1.55810 1.21566 1.22599 0.92219 0.97609 0.91408 1.21807 0.99345 0.97890 0.96972 1.22155 0.98401 1.01588 0.96675 1.23118 0.94238 0.98214 0.88865 0.88166 1.20920 0.96933 0.92191 0.85760 0.89774 1.22661 0.96940 0.98178 0.98923 1.22688 0.96395 0.87314 1.00135 1.64780 1.17308 1.19888 1.21718 1.22044 0.89839 1.02177 0.94388 1.20741 0.82633 0.82876 0.91140 1.90491 1.70817 1.50098 1.38836 1.41907 1.13599 1.52378 1.13061 1.19664 0.97603 1.37434 0.91264 0.90430 1.26019 0.97568 0.95820 1.01850 1.69675 1.17886 1.38739 1.29769 0.84889 0.77827 0.78302 0.77434 1.19934 1.19678 1.19473 0.89932 0.88010 0.92299 0.89403 0.87568 0.89618 0.89483 0.86128 0.87881 0.91183 0.91850 0.90253 0.89370 0.91039 0.95048 0.91839 0.87540 0.89959 0.76997 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.23 71.98 0.59 -1.52 16 2 C 0.11 1.58 1.20 -11.54 -0.01 1.57 16 3 C -0.18 -1.49 8.53 71.98 0.61 -0.87 16 4 F -0.19 -3.03 14.68 44.97 0.66 -2.37 16 5 C 0.49 10.94 6.77 87.65 0.59 11.53 16 6 O -0.56 -16.99 15.28 -3.04 -0.05 -17.03 16 7 N -0.58 -11.79 2.68 -797.17 -2.13 -13.92 16 8 C 0.08 1.13 4.39 86.46 0.38 1.51 16 9 C -0.12 -1.73 6.10 30.66 0.19 -1.54 16 10 C -0.15 -2.99 3.56 30.51 0.11 -2.88 16 11 C 0.06 1.64 3.64 44.90 0.16 1.81 16 12 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 13 C 0.15 3.79 3.09 46.14 0.14 3.93 16 14 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16 15 C -0.13 -3.35 6.13 31.32 0.19 -3.16 16 16 C 0.06 2.15 4.38 86.40 0.38 2.53 16 17 N -0.51 -17.28 5.25 -860.30 -4.52 -21.80 16 18 C 0.05 1.63 4.95 85.56 0.42 2.06 16 19 C 0.44 20.96 7.38 87.66 0.65 21.61 16 20 O -0.62 -34.03 13.44 -3.07 -0.04 -34.07 16 21 N -0.57 -29.36 5.29 -306.99 -1.62 -30.99 16 22 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 25 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 26 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 30 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.09 0.61 5.39 -2.39 -0.01 0.60 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.99 7.43 -2.38 -0.02 0.97 16 37 H 0.12 1.28 3.75 -2.39 -0.01 1.27 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.38 6.39 -2.39 -0.02 1.36 16 41 H 0.08 1.55 6.84 -2.39 -0.02 1.53 16 42 H 0.09 1.92 7.15 -2.39 -0.02 1.90 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.03 1.11 7.13 -2.39 -0.02 1.10 16 45 H 0.06 2.67 6.82 -2.38 -0.02 2.65 16 46 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 47 H 0.08 2.49 5.55 -2.38 -0.01 2.48 16 48 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16 49 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -72.11 372.12 0.55 -71.56 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.25 Total: 34.30 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 5.69 Total: 18.40 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -7.99 Total: -115.88 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.09 Total: -51.10 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.66 Total: -2.37 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -72.11 0.55 -71.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569901242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.090 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds