Wall clock time and date at job start Wed Apr 1 2020 00:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36773 * 125.79783 * 2 1 4 4 C 1.47266 * 126.94293 * 359.97438 * 3 2 1 5 5 O 1.21631 * 119.99878 * 359.70894 * 4 3 2 6 6 N 1.34773 * 119.99956 * 179.71314 * 4 3 2 7 7 C 1.46506 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47148 * 179.72251 * 7 6 4 9 9 C 1.38233 * 119.99904 * 269.72266 * 8 7 6 10 10 C 1.38231 * 119.99993 * 179.76482 * 9 8 7 11 11 C 1.38237 * 120.00323 * 0.51307 * 10 9 8 12 12 C 1.50696 * 120.00559 * 179.72317 * 11 10 9 13 13 H 1.08998 * 109.47005 * 200.01913 * 12 11 10 14 14 C 1.53002 * 109.47040 * 80.01776 * 12 11 10 15 15 N 1.46502 * 109.47060 * 320.01996 * 12 11 10 16 16 C 1.36931 * 119.99941 * 205.00192 * 15 12 11 17 17 H 1.07999 * 120.00406 * 359.97438 * 16 15 12 18 18 C 1.38817 * 119.99975 * 179.97438 * 16 15 12 19 19 N 1.31621 * 119.99855 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99872 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46803 * 90.00063 * 20 18 16 22 22 H 1.48496 * 109.47097 * 209.99510 * 20 18 16 23 23 H 1.48495 * 109.46990 * 330.00274 * 20 18 16 24 24 C 1.38246 * 119.99369 * 359.74123 * 11 10 9 25 25 C 1.38231 * 120.00100 * 89.99754 * 8 7 6 26 26 C 1.46684 * 106.11652 * 179.72166 * 3 2 1 27 27 C 1.34493 * 106.33311 * 0.25908 * 26 3 2 28 28 N 1.34660 * 125.80839 * 180.17363 * 2 1 3 29 29 C 1.46494 * 124.84708 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47195 * 90.00116 * 1 2 3 31 31 H 1.09008 * 109.46827 * 209.99684 * 1 2 3 32 32 H 1.09000 * 109.47270 * 329.99192 * 1 2 3 33 33 H 0.97005 * 120.00161 * 359.72135 * 6 4 3 34 34 H 1.09001 * 109.46512 * 299.72412 * 7 6 4 35 35 H 1.08998 * 109.47174 * 59.71534 * 7 6 4 36 36 H 1.08002 * 120.00456 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.00301 * 180.23254 * 10 9 8 38 38 H 1.09004 * 109.47204 * 60.00604 * 14 12 11 39 39 H 1.08999 * 109.46658 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 14 12 11 41 41 H 0.97000 * 119.99900 * 24.99545 * 15 12 11 42 42 H 0.97003 * 119.99661 * 179.97438 * 19 18 16 43 43 H 1.07996 * 119.99765 * 179.97438 * 24 11 10 44 44 H 1.08005 * 119.99934 * 0.02562 * 25 8 7 45 45 H 1.08002 * 126.83642 * 180.22567 * 26 3 2 46 46 H 1.07999 * 125.57031 * 180.02562 * 27 26 3 47 47 H 1.09008 * 109.47250 * 270.31485 * 29 28 2 48 48 H 1.08997 * 109.47649 * 30.31194 * 29 28 2 49 49 H 1.09000 * 109.47758 * 150.31809 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6837 2.7839 -0.0064 6 7 2.7847 3.5055 0.0054 7 6 2.3500 4.9046 0.0054 8 6 3.5577 5.8058 0.0195 9 6 4.0969 6.2202 1.2230 10 6 5.2076 7.0430 1.2360 11 6 5.7729 7.4600 0.0454 12 6 6.9800 8.3619 0.0595 13 1 7.0698 8.8638 -0.9039 14 6 8.2365 7.5284 0.3194 15 7 6.8298 9.3623 1.1192 16 6 7.4849 10.5612 1.0268 17 1 8.1127 10.7692 0.1729 18 6 7.3421 11.5093 2.0306 19 7 7.9723 12.6615 1.9420 20 14 6.2557 11.1499 3.5071 21 1 7.0656 10.5062 4.5725 22 1 5.6822 12.4198 4.0204 23 1 5.1560 10.2380 3.1021 24 6 5.2305 7.0497 -1.1582 25 6 4.1230 6.2227 -1.1711 26 6 3.6881 0.6153 0.0068 27 6 3.6096 -0.7273 0.0045 28 7 2.2948 -1.0921 -0.0033 29 6 1.8096 -2.4743 -0.0080 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5140 33 1 3.7308 3.2916 0.0141 34 1 1.7600 5.1016 -0.8896 35 1 1.7431 5.0965 0.8902 36 1 3.6528 5.8978 2.1533 37 1 5.6311 7.3638 2.1763 38 1 8.3483 6.7841 -0.4690 39 1 9.1096 8.1808 0.3291 40 1 8.1467 7.0266 1.2828 41 1 6.2662 9.1755 1.8862 42 1 7.8722 13.3242 2.6433 43 1 5.6719 7.3758 -2.0884 44 1 3.6988 5.9028 -2.1114 45 1 4.5889 1.2112 0.0121 46 1 4.4499 -1.4057 0.0085 47 1 1.6835 -2.8187 1.0185 48 1 0.8523 -2.5216 -0.5272 49 1 2.5317 -3.1113 -0.5187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570031200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:07 Heat of formation + Delta-G solvation = 46.229055 kcal Electronic energy + Delta-G solvation = -28103.463413 eV Core-core repulsion = 24224.388805 eV Total energy + Delta-G solvation = -3879.074608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68520 -39.72601 -38.89484 -36.06548 -34.52524 -33.24241 -32.27416 -31.90188 -30.83675 -30.50201 -28.89560 -27.38376 -26.67281 -25.58591 -23.68441 -22.75325 -22.38112 -21.49669 -20.35646 -19.82890 -19.34763 -17.97015 -17.76043 -16.33962 -16.07473 -15.94008 -15.60917 -15.40588 -14.79448 -14.77205 -14.44797 -14.22970 -13.78641 -13.58629 -13.46410 -13.34240 -13.27337 -13.11623 -13.03910 -12.92815 -12.83235 -12.52657 -12.37117 -12.31546 -12.16699 -11.86557 -11.58372 -11.45151 -11.04787 -10.89875 -10.66773 -10.32901 -10.03918 -9.98097 -9.59140 -9.18782 -8.99997 -8.90999 -8.72482 -8.46228 -8.39431 -7.29946 -5.77972 -3.13556 1.40728 1.49795 1.60170 2.10089 2.40865 3.35094 3.37376 3.40212 3.43885 3.45424 4.02785 4.24107 4.39494 4.55949 4.58495 4.59043 4.68363 4.82405 4.88084 4.94704 5.01339 5.15315 5.20249 5.22907 5.31114 5.31942 5.49117 5.53556 5.55627 5.61339 5.66344 5.70437 5.86913 5.90637 5.94994 6.17069 6.22306 6.24567 6.36545 6.37767 6.45307 6.54909 6.63663 6.69360 6.70771 6.86190 6.88151 7.04553 7.18994 7.53956 7.97589 8.25944 8.40797 9.18655 9.91147 10.10610 11.40139 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.001911 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.247098 B =14650.531167 C =14988.331114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.104 3.896 3 C -0.237 4.237 4 C 0.591 3.409 5 O -0.555 6.555 6 N -0.720 5.720 7 C 0.168 3.832 8 C -0.126 4.126 9 C -0.099 4.099 10 C -0.114 4.114 11 C -0.057 4.057 12 C 0.209 3.791 13 H 0.065 0.935 14 C -0.159 4.159 15 N -0.745 5.745 16 C -0.243 4.243 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.118 4.118 25 C -0.099 4.099 26 C -0.166 4.166 27 C -0.019 4.019 28 N -0.447 5.447 29 C 0.067 3.933 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.402 0.598 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.146 0.854 46 H 0.167 0.833 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -32.498 -5.658 35.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.247 4.247 4 C 0.380 3.620 5 O -0.435 6.435 6 N -0.371 5.371 7 C 0.045 3.955 8 C -0.127 4.127 9 C -0.117 4.117 10 C -0.132 4.132 11 C -0.058 4.058 12 C 0.100 3.900 13 H 0.083 0.917 14 C -0.219 4.219 15 N -0.389 5.389 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.137 4.137 25 C -0.118 4.118 26 C -0.190 4.190 27 C -0.145 4.145 28 N -0.123 5.123 29 C -0.074 4.074 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.164 0.836 46 H 0.184 0.816 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.788 -32.415 -5.740 35.316 hybrid contribution -0.032 -0.231 1.195 1.218 sum -12.820 -32.646 -4.544 35.366 Atomic orbital electron populations 1.20564 0.87093 1.04115 1.03347 1.20330 0.93763 0.85169 1.01985 1.20109 0.93259 0.91920 1.19409 1.17346 0.85223 0.84033 0.75374 1.90728 1.16679 1.84488 1.51635 1.45880 1.09987 1.05496 1.75760 1.20109 0.93795 0.78787 1.02758 1.19690 0.98175 1.01101 0.93734 1.21008 0.95982 0.97585 0.97160 1.21014 0.96149 0.97611 0.98439 1.20531 0.96773 0.95631 0.92875 1.19218 0.89246 0.87853 0.93671 0.91742 1.22382 0.99892 0.99461 1.00178 1.42871 1.57578 1.15964 1.22502 1.19066 1.21686 0.90383 1.06183 0.89063 1.24652 0.99891 0.96057 0.98391 1.69698 1.46458 1.06952 1.34888 0.86612 0.81009 0.77334 0.84040 1.21015 1.21641 1.20193 1.21033 0.96434 0.98482 0.97738 1.20968 0.95988 0.97670 0.97169 1.22044 0.95808 0.93611 1.07501 1.21701 0.85362 0.96294 1.11095 1.43563 1.06071 1.06125 1.56584 1.22097 1.01748 0.80049 1.03548 0.90528 0.92009 0.87982 0.76387 0.90867 0.90900 0.86314 0.86039 0.93991 0.91921 0.93432 0.80430 0.93038 0.85867 0.86273 0.83625 0.81561 0.90665 0.89629 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.26 36.00 0.33 -0.41 16 2 C 0.10 0.99 6.89 -81.88 -0.56 0.42 16 3 C -0.24 -2.60 6.29 -103.35 -0.65 -3.25 16 4 C 0.59 7.49 7.81 -12.59 -0.10 7.39 16 5 O -0.56 -8.49 14.82 5.25 0.08 -8.41 16 6 N -0.72 -7.93 5.54 -62.61 -0.35 -8.28 16 7 C 0.17 1.95 5.80 -5.19 -0.03 1.92 16 8 C -0.13 -1.57 5.25 -104.63 -0.55 -2.12 16 9 C -0.10 -1.34 9.70 -39.59 -0.38 -1.72 16 10 C -0.11 -1.80 9.06 -39.58 -0.36 -2.16 16 11 C -0.06 -0.94 4.95 -104.62 -0.52 -1.45 16 12 C 0.21 3.99 3.09 -69.08 -0.21 3.77 16 13 H 0.06 1.26 7.94 -51.93 -0.41 0.84 16 14 C -0.16 -2.73 9.47 37.16 0.35 -2.38 16 15 N -0.75 -17.49 4.87 -54.55 -0.27 -17.75 16 16 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 20 Si 0.88 22.14 27.73 -169.99 -4.71 17.43 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 24 C -0.12 -1.67 9.67 -39.58 -0.38 -2.05 16 25 C -0.10 -1.24 9.70 -39.59 -0.38 -1.62 16 26 C -0.17 -1.45 10.56 -37.50 -0.40 -1.85 16 27 C -0.02 -0.13 11.34 -16.82 -0.19 -0.32 16 28 N -0.45 -3.18 3.09 -119.88 -0.37 -3.55 16 29 C 0.07 0.20 10.60 59.84 0.63 0.84 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.33 7.59 -51.92 -0.39 -0.06 16 32 H 0.10 1.02 6.47 -51.93 -0.34 0.69 16 33 H 0.40 3.82 7.59 -40.82 -0.31 3.51 16 34 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.12 2.00 6.92 -52.48 -0.36 1.64 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.36 8.37 3.93 -40.82 -0.16 8.21 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 43 H 0.12 1.55 8.04 -52.49 -0.42 1.12 16 44 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 45 H 0.15 1.03 7.70 -52.49 -0.40 0.63 16 46 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.07 0.16 8.14 -51.92 -0.42 -0.26 16 48 H 0.08 0.18 7.51 -51.93 -0.39 -0.21 16 49 H 0.09 0.12 8.13 -51.93 -0.42 -0.31 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -34.86 405.34 -9.82 -44.68 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.43 Total: 10.06 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.65 Total: -11.87 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.21 Total: -58.00 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.86 -9.82 -44.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570031200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.909 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds