Wall clock time and date at job start Wed Apr 1 2020 00:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36773 * 125.79783 * 2 1 4 4 C 1.47266 * 126.94293 * 359.97438 * 3 2 1 5 5 O 1.21631 * 119.99878 * 359.70894 * 4 3 2 6 6 N 1.34773 * 119.99956 * 179.71314 * 4 3 2 7 7 C 1.46506 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47148 * 179.72251 * 7 6 4 9 9 C 1.38233 * 119.99904 * 269.72266 * 8 7 6 10 10 C 1.38231 * 119.99993 * 179.76482 * 9 8 7 11 11 C 1.38237 * 120.00323 * 0.51307 * 10 9 8 12 12 C 1.50696 * 120.00559 * 179.72317 * 11 10 9 13 13 H 1.08998 * 109.47005 * 200.01913 * 12 11 10 14 14 C 1.53002 * 109.47040 * 80.01776 * 12 11 10 15 15 N 1.46502 * 109.47060 * 320.01996 * 12 11 10 16 16 C 1.36931 * 119.99941 * 205.00192 * 15 12 11 17 17 H 1.07999 * 120.00406 * 359.97438 * 16 15 12 18 18 C 1.38817 * 119.99975 * 179.97438 * 16 15 12 19 19 N 1.31621 * 119.99855 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99872 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46803 * 90.00063 * 20 18 16 22 22 H 1.48496 * 109.47097 * 209.99510 * 20 18 16 23 23 H 1.48495 * 109.46990 * 330.00274 * 20 18 16 24 24 C 1.38246 * 119.99369 * 359.74123 * 11 10 9 25 25 C 1.38231 * 120.00100 * 89.99754 * 8 7 6 26 26 C 1.46684 * 106.11652 * 179.72166 * 3 2 1 27 27 C 1.34493 * 106.33311 * 0.25908 * 26 3 2 28 28 N 1.34660 * 125.80839 * 180.17363 * 2 1 3 29 29 C 1.46494 * 124.84708 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47195 * 90.00116 * 1 2 3 31 31 H 1.09008 * 109.46827 * 209.99684 * 1 2 3 32 32 H 1.09000 * 109.47270 * 329.99192 * 1 2 3 33 33 H 0.97005 * 120.00161 * 359.72135 * 6 4 3 34 34 H 1.09001 * 109.46512 * 299.72412 * 7 6 4 35 35 H 1.08998 * 109.47174 * 59.71534 * 7 6 4 36 36 H 1.08002 * 120.00456 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.00301 * 180.23254 * 10 9 8 38 38 H 1.09004 * 109.47204 * 60.00604 * 14 12 11 39 39 H 1.08999 * 109.46658 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 14 12 11 41 41 H 0.97000 * 119.99900 * 24.99545 * 15 12 11 42 42 H 0.97003 * 119.99661 * 179.97438 * 19 18 16 43 43 H 1.07996 * 119.99765 * 179.97438 * 24 11 10 44 44 H 1.08005 * 119.99934 * 0.02562 * 25 8 7 45 45 H 1.08002 * 126.83642 * 180.22567 * 26 3 2 46 46 H 1.07999 * 125.57031 * 180.02562 * 27 26 3 47 47 H 1.09008 * 109.47250 * 270.31485 * 29 28 2 48 48 H 1.08997 * 109.47649 * 30.31194 * 29 28 2 49 49 H 1.09000 * 109.47758 * 150.31809 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6837 2.7839 -0.0064 6 7 2.7847 3.5055 0.0054 7 6 2.3500 4.9046 0.0054 8 6 3.5577 5.8058 0.0195 9 6 4.0969 6.2202 1.2230 10 6 5.2076 7.0430 1.2360 11 6 5.7729 7.4600 0.0454 12 6 6.9800 8.3619 0.0595 13 1 7.0698 8.8638 -0.9039 14 6 8.2365 7.5284 0.3194 15 7 6.8298 9.3623 1.1192 16 6 7.4849 10.5612 1.0268 17 1 8.1127 10.7692 0.1729 18 6 7.3421 11.5093 2.0306 19 7 7.9723 12.6615 1.9420 20 14 6.2557 11.1499 3.5071 21 1 7.0656 10.5062 4.5725 22 1 5.6822 12.4198 4.0204 23 1 5.1560 10.2380 3.1021 24 6 5.2305 7.0497 -1.1582 25 6 4.1230 6.2227 -1.1711 26 6 3.6881 0.6153 0.0068 27 6 3.6096 -0.7273 0.0045 28 7 2.2948 -1.0921 -0.0033 29 6 1.8096 -2.4743 -0.0080 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5140 33 1 3.7308 3.2916 0.0141 34 1 1.7600 5.1016 -0.8896 35 1 1.7431 5.0965 0.8902 36 1 3.6528 5.8978 2.1533 37 1 5.6311 7.3638 2.1763 38 1 8.3483 6.7841 -0.4690 39 1 9.1096 8.1808 0.3291 40 1 8.1467 7.0266 1.2828 41 1 6.2662 9.1755 1.8862 42 1 7.8722 13.3242 2.6433 43 1 5.6719 7.3758 -2.0884 44 1 3.6988 5.9028 -2.1114 45 1 4.5889 1.2112 0.0121 46 1 4.4499 -1.4057 0.0085 47 1 1.6835 -2.8187 1.0185 48 1 0.8523 -2.5216 -0.5272 49 1 2.5317 -3.1113 -0.5187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570031200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:06 Heat of formation + Delta-G solvation = 25.144508 kcal Electronic energy + Delta-G solvation = -28104.377707 eV Core-core repulsion = 24224.388805 eV Total energy + Delta-G solvation = -3879.988902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.26821 -40.79572 -39.90799 -37.53987 -35.72689 -34.21249 -33.67138 -32.51076 -32.14189 -31.77550 -30.42810 -28.13803 -27.17778 -26.54822 -25.49953 -23.89057 -23.27137 -22.69867 -21.20782 -21.05239 -20.06175 -19.92532 -18.43778 -17.35033 -16.98624 -16.81327 -16.61482 -16.56026 -16.19408 -15.78597 -15.58936 -15.25385 -15.01746 -14.76569 -14.57472 -14.27567 -14.19727 -14.07848 -13.97516 -13.94395 -13.76666 -13.59907 -13.45001 -13.15652 -13.09309 -12.82595 -12.82002 -12.72698 -12.55436 -12.44936 -12.10287 -11.93225 -11.72011 -11.55367 -11.06875 -10.93372 -10.11151 -9.81612 -9.59037 -9.49820 -9.31773 -9.09105 -8.02400 -5.35229 0.29042 0.50739 0.75818 1.36012 1.38598 1.45723 1.52929 1.92112 2.45945 2.47383 2.59573 2.95799 3.29860 3.62430 3.66323 3.85104 3.91780 3.94999 3.99310 4.04842 4.14054 4.23630 4.33406 4.40786 4.44810 4.53001 4.58401 4.67378 4.72163 4.72995 4.74017 4.75216 4.78332 4.96971 4.98587 5.05766 5.07964 5.09443 5.21036 5.27109 5.40387 5.48841 5.53600 5.62905 5.72979 5.81544 5.82103 6.06870 6.11788 6.22295 6.37416 6.68959 7.07344 7.36289 7.83213 8.02293 9.18934 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.001911 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.247098 B =14650.531167 C =14988.331114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.092 3.908 3 C -0.272 4.272 4 C 0.586 3.414 5 O -0.591 6.591 6 N -0.712 5.712 7 C 0.174 3.826 8 C -0.113 4.113 9 C -0.097 4.097 10 C -0.128 4.128 11 C -0.075 4.075 12 C 0.203 3.797 13 H 0.055 0.945 14 C -0.149 4.149 15 N -0.749 5.749 16 C -0.226 4.226 17 H 0.061 0.939 18 C -0.063 4.063 19 N -0.982 5.982 20 Si 0.947 3.053 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.255 1.255 24 C -0.119 4.119 25 C -0.092 4.092 26 C -0.184 4.184 27 C -0.012 4.012 28 N -0.443 5.443 29 C 0.058 3.942 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.050 0.950 41 H 0.365 0.635 42 H 0.257 0.743 43 H 0.137 0.863 44 H 0.144 0.856 45 H 0.157 0.843 46 H 0.200 0.800 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 -36.369 -5.846 39.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C -0.282 4.282 4 C 0.377 3.623 5 O -0.473 6.473 6 N -0.363 5.363 7 C 0.050 3.950 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.147 4.147 11 C -0.076 4.076 12 C 0.096 3.904 13 H 0.073 0.927 14 C -0.209 4.209 15 N -0.394 5.394 16 C -0.357 4.357 17 H 0.079 0.921 18 C -0.254 4.254 19 N -0.633 5.633 20 Si 0.774 3.226 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.180 1.180 24 C -0.137 4.137 25 C -0.110 4.110 26 C -0.207 4.207 27 C -0.138 4.138 28 N -0.119 5.119 29 C -0.082 4.082 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.199 0.801 42 H 0.066 0.934 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.174 0.826 46 H 0.216 0.784 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.928 -36.368 -5.953 39.396 hybrid contribution 0.332 0.812 1.128 1.429 sum -13.596 -35.556 -4.825 38.371 Atomic orbital electron populations 1.20504 0.86550 1.04099 1.03525 1.20552 0.94443 0.85803 1.01819 1.20208 0.94908 0.91349 1.21734 1.17700 0.84854 0.85042 0.74727 1.90701 1.18057 1.85107 1.53480 1.45771 1.10274 1.04989 1.75269 1.20016 0.93282 0.78989 1.02665 1.19764 0.97780 1.00344 0.93471 1.21137 0.95220 0.96900 0.98324 1.20993 0.97175 0.98698 0.97792 1.20276 0.96479 0.96650 0.94217 1.19375 0.91605 0.87639 0.91783 0.92695 1.22229 0.97750 0.99367 1.01534 1.42891 1.57147 1.15392 1.23938 1.19039 1.20337 0.91769 1.04587 0.92141 1.25430 1.02141 0.96056 1.01796 1.69872 1.48932 1.08326 1.36159 0.85526 0.79651 0.77141 0.80247 1.20250 1.22292 1.17984 1.21185 0.96706 0.98408 0.97397 1.21210 0.95048 0.96513 0.98224 1.22260 0.95248 0.94657 1.08540 1.22245 0.86174 0.96315 1.09082 1.43854 1.05907 1.07074 1.55033 1.22430 1.02890 0.78035 1.04845 0.90214 0.89409 0.90537 0.75429 0.90744 0.91368 0.84829 0.87092 0.90876 0.94192 0.93135 0.80097 0.93417 0.84497 0.83789 0.82590 0.78362 0.89477 0.88663 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.26 71.23 0.66 -0.68 16 2 C 0.09 1.63 6.89 41.78 0.29 1.92 16 3 C -0.27 -5.73 6.29 -19.04 -0.12 -5.85 16 4 C 0.59 14.62 7.81 86.62 0.68 15.29 16 5 O -0.59 -18.24 14.82 -4.13 -0.06 -18.30 16 6 N -0.71 -14.76 5.54 -470.25 -2.61 -17.37 16 7 C 0.17 3.73 5.80 85.63 0.50 4.23 16 8 C -0.11 -2.54 5.25 -19.87 -0.10 -2.64 16 9 C -0.10 -2.44 9.70 22.27 0.22 -2.22 16 10 C -0.13 -3.87 9.06 22.27 0.20 -3.67 16 11 C -0.08 -2.37 4.95 -19.86 -0.10 -2.46 16 12 C 0.20 7.68 3.09 44.24 0.14 7.81 16 13 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 14 C -0.15 -5.02 9.47 71.98 0.68 -4.33 16 15 N -0.75 -35.16 4.87 -326.50 -1.59 -36.76 16 16 C -0.23 -12.94 10.41 84.04 0.87 -12.07 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 18 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 20 Si 0.95 46.20 27.73 68.60 1.90 48.11 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 23 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 24 C -0.12 -3.07 9.67 22.27 0.22 -2.86 16 25 C -0.09 -2.02 9.70 22.27 0.22 -1.80 16 26 C -0.18 -2.88 10.56 23.62 0.25 -2.63 16 27 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 28 N -0.44 -5.16 3.09 -533.20 -1.65 -6.80 16 29 C 0.06 0.16 10.60 127.77 1.35 1.51 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 0.78 7.59 -2.38 -0.02 0.76 16 32 H 0.08 1.57 6.47 -2.39 -0.02 1.55 16 33 H 0.41 7.09 7.59 -92.70 -0.70 6.39 16 34 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 35 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.11 3.54 6.92 -2.91 -0.02 3.52 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.36 16.59 3.93 -92.71 -0.36 16.22 16 42 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 44 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.16 1.91 7.70 -2.91 -0.02 1.89 16 46 H 0.20 0.83 8.06 -2.91 -0.02 0.80 16 47 H 0.09 0.07 8.14 -2.38 -0.02 0.06 16 48 H 0.09 0.09 7.51 -2.39 -0.02 0.08 16 49 H 0.11 -0.14 8.13 -2.39 -0.02 -0.16 16 Total: -1.00 -77.95 405.34 3.49 -74.46 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.16 Total: 32.71 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 7.35 Total: -12.91 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.54 Total: -124.05 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.06 Total: -18.30 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.11 kcal Total: -77.95 3.49 -74.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570031200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.600 kcal (2) G-P(sol) polarization free energy of solvation -77.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds