Wall clock time and date at job start Wed Apr 1 2020 00:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47468 * 2 1 4 4 N 1.34655 * 125.80352 * 265.13600 * 3 2 1 5 5 H 0.97002 * 124.84950 * 0.05772 * 4 3 2 6 6 C 1.36441 * 110.30055 * 180.28962 * 4 3 2 7 7 C 1.34491 * 108.85331 * 359.74908 * 6 4 3 8 8 C 1.36767 * 125.80049 * 84.99610 * 3 2 1 9 9 C 1.47270 * 126.94289 * 359.97438 * 8 3 2 10 10 O 1.21626 * 119.99592 * 359.70417 * 9 8 3 11 11 N 1.34776 * 119.99822 * 179.70677 * 9 8 3 12 12 C 1.46498 * 119.99843 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47332 * 179.97438 * 12 11 9 14 14 C 1.38258 * 120.00519 * 255.37628 * 13 12 11 15 15 C 1.38204 * 119.99978 * 179.97438 * 14 13 12 16 16 C 1.38257 * 120.00299 * 359.79303 * 15 14 13 17 17 C 1.38209 * 119.99505 * 0.48755 * 16 15 14 18 18 C 1.38216 * 119.99806 * 75.40003 * 13 12 11 19 19 C 1.50700 * 119.99709 * 359.97438 * 18 13 12 20 20 N 1.46501 * 109.47027 * 178.01037 * 19 18 13 21 21 C 1.46504 * 119.99740 * 273.78239 * 20 19 18 22 22 C 1.36934 * 120.00397 * 93.78032 * 20 19 18 23 23 H 1.07996 * 120.00213 * 21.82087 * 22 20 19 24 24 C 1.38818 * 119.99814 * 201.82088 * 22 20 19 25 25 N 1.31610 * 120.00088 * 15.24611 * 24 22 20 26 26 Si 1.86800 * 119.99808 * 195.24690 * 24 22 20 27 27 H 1.48507 * 109.47003 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47256 * 119.99699 * 26 24 22 29 29 H 1.48496 * 109.47217 * 240.00374 * 26 24 22 30 30 H 1.09004 * 109.47055 * 300.00110 * 1 2 3 31 31 H 1.09001 * 109.47440 * 59.99758 * 1 2 3 32 32 H 1.09001 * 109.47549 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47055 * 239.99890 * 2 1 3 34 34 H 1.08997 * 109.47013 * 119.99993 * 2 1 3 35 35 H 1.08001 * 125.57459 * 179.72606 * 6 4 3 36 36 H 1.08001 * 126.83175 * 180.02562 * 7 6 4 37 37 H 0.96993 * 120.00058 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.46756 * 60.00053 * 12 11 9 39 39 H 1.08996 * 109.47328 * 300.00382 * 12 11 9 40 40 H 1.08005 * 119.99355 * 0.02562 * 14 13 12 41 41 H 1.08007 * 120.00091 * 180.02562 * 15 14 13 42 42 H 1.07998 * 119.99915 * 180.25336 * 16 15 14 43 43 H 1.08005 * 119.99269 * 179.76594 * 17 16 15 44 44 H 1.09000 * 109.47566 * 298.00417 * 19 18 13 45 45 H 1.08996 * 109.47640 * 58.00583 * 19 18 13 46 46 H 1.09001 * 109.47357 * 93.48398 * 21 20 19 47 47 H 1.09003 * 109.46965 * 213.48972 * 21 20 19 48 48 H 1.08999 * 109.46812 * 333.48521 * 21 20 19 49 49 H 0.97007 * 120.00215 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3823 2.1326 -1.0882 5 1 2.3476 1.8040 -2.0002 6 6 2.7975 3.3803 -0.7242 7 6 2.7152 3.4928 0.6134 8 6 2.2079 2.2073 1.1050 9 6 1.9461 1.8365 2.5060 10 8 1.5229 0.7279 2.7727 11 7 2.1753 2.7257 3.4926 12 6 1.9144 2.3570 4.8862 13 6 2.2506 3.5192 5.7847 14 6 3.4098 3.4979 6.5380 15 6 3.7183 4.5640 7.3616 16 6 2.8701 5.6537 7.4290 17 6 1.7084 5.6724 6.6803 18 6 1.4000 4.6062 5.8561 19 6 0.1365 4.6294 5.0350 20 7 -0.6095 5.8573 5.3214 21 6 -1.5404 5.9018 6.4518 22 6 -0.4368 6.9633 4.5327 23 1 -0.0520 6.8562 3.5293 24 6 -0.7563 8.2221 5.0230 25 7 -0.9345 8.3994 6.3148 26 14 -0.9332 9.6643 3.8491 27 1 -0.6839 9.2046 2.4591 28 1 -2.3074 10.2181 3.9488 29 1 0.0518 10.7167 4.2059 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 3.1372 4.1514 -1.3999 36 1 2.9713 4.3577 1.2074 37 1 2.5131 3.6097 3.2798 38 1 2.5302 1.4992 5.1564 39 1 0.8617 2.0997 5.0029 40 1 4.0745 2.6485 6.4821 41 1 4.6241 4.5476 7.9497 42 1 3.1133 6.4885 8.0695 43 1 1.0439 6.5220 6.7359 44 1 0.3910 4.5978 3.9756 45 1 -0.4768 3.7644 5.2872 46 1 -1.0263 6.2905 7.3309 47 1 -2.3804 6.5514 6.2053 48 1 -1.9073 4.8968 6.6602 49 1 -1.1581 9.2790 6.6574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672925148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:22 Heat of formation + Delta-G solvation = 50.344282 kcal Electronic energy + Delta-G solvation = -29786.964772 eV Core-core repulsion = 25908.068614 eV Total energy + Delta-G solvation = -3878.896158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.32418 -39.41581 -38.38823 -35.51668 -34.69812 -33.58621 -31.95159 -31.47046 -30.41416 -29.81768 -28.36234 -26.44188 -25.84201 -25.33202 -23.57147 -22.12367 -22.08467 -20.89402 -20.56274 -19.86703 -19.33189 -17.73298 -16.71201 -16.35551 -15.71518 -15.46684 -15.37677 -14.88631 -14.52056 -14.39248 -14.09581 -14.02744 -13.79702 -13.61715 -13.37074 -13.13363 -13.11477 -12.86822 -12.53039 -12.40274 -12.21423 -12.13415 -12.03081 -11.51603 -11.49081 -11.26445 -11.01161 -10.87686 -10.73450 -10.47413 -10.36518 -10.23182 -9.98765 -9.82823 -9.68161 -8.95828 -8.70429 -8.55606 -8.23255 -8.20783 -7.94595 -6.82048 -5.75740 -3.19902 1.78629 1.81542 2.07586 2.40019 3.03467 3.36937 3.45207 3.46505 3.70844 3.74953 4.46709 4.49943 4.62586 4.87091 4.97309 5.05440 5.24477 5.28501 5.35577 5.37541 5.40961 5.47449 5.50001 5.64570 5.69000 5.74530 5.80713 5.88117 5.90517 5.98487 6.09492 6.18837 6.21112 6.36473 6.41906 6.53775 6.64597 6.69597 6.74115 6.77504 6.82912 6.87961 7.01104 7.26711 7.33555 7.37840 7.47178 7.71244 7.75829 7.83744 7.88361 8.37286 8.57712 9.21737 9.84354 10.33687 11.29570 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.003610 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.411123 B = 7755.378551 C = 9324.711140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C 0.105 3.895 4 N -0.554 5.554 5 H 0.414 0.586 6 C -0.020 4.020 7 C -0.163 4.163 8 C -0.230 4.230 9 C 0.590 3.410 10 O -0.556 6.556 11 N -0.716 5.716 12 C 0.171 3.829 13 C -0.126 4.126 14 C -0.115 4.115 15 C -0.141 4.141 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.076 4.076 19 C 0.182 3.818 20 N -0.598 5.598 21 C 0.160 3.840 22 C -0.251 4.251 23 H 0.068 0.932 24 C 0.004 3.996 25 N -0.906 5.906 26 Si 0.900 3.100 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.168 0.832 36 H 0.146 0.854 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.161 0.839 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.030 0.970 47 H 0.044 0.956 48 H -0.002 1.002 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 -13.030 -10.368 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.013 4.013 4 N -0.149 5.149 5 H 0.250 0.750 6 C -0.147 4.147 7 C -0.188 4.188 8 C -0.240 4.240 9 C 0.379 3.621 10 O -0.437 6.437 11 N -0.366 5.366 12 C 0.048 3.952 13 C -0.127 4.127 14 C -0.134 4.134 15 C -0.159 4.159 16 C -0.141 4.141 17 C -0.105 4.105 18 C -0.079 4.079 19 C 0.054 3.946 20 N -0.320 5.320 21 C 0.015 3.985 22 C -0.380 4.380 23 H 0.086 0.914 24 C -0.195 4.195 25 N -0.552 5.552 26 Si 0.731 3.269 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.179 0.821 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.016 0.984 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.301 -13.665 -10.205 18.968 hybrid contribution 0.290 1.523 -0.952 1.819 sum 8.591 -12.143 -11.157 18.593 Atomic orbital electron populations 1.21657 0.93976 1.01918 1.02320 1.20267 0.96774 0.89120 1.03649 1.20316 1.00461 0.94756 0.85768 1.41570 1.52447 1.12265 1.08607 0.75030 1.21705 1.08303 0.88081 0.96591 1.22115 1.05388 0.97395 0.93860 1.20148 1.15512 0.95982 0.92343 1.17325 0.76805 0.84007 0.83941 1.90714 1.47091 1.21538 1.84308 1.45856 1.67395 1.17342 1.06033 1.20047 1.01398 0.94662 0.79110 1.19676 0.96315 0.96288 1.00377 1.20821 0.96357 0.98415 0.97767 1.20962 0.99779 0.94766 1.00385 1.21269 0.95304 0.97743 0.99737 1.21786 0.96132 0.99507 0.93032 1.21277 0.97397 0.92464 0.96806 1.19918 0.88443 0.89766 0.96449 1.43960 1.45052 1.09202 1.33789 1.20834 0.92849 0.94516 0.90263 1.19224 1.39969 0.84593 0.94227 0.91391 1.24920 1.01862 0.97184 0.95494 1.70043 1.52504 1.22030 1.10583 0.86249 0.77378 0.82789 0.80532 1.20390 1.21698 1.21836 0.91391 0.93463 0.92161 0.91831 0.87885 0.81441 0.83608 0.76258 0.91455 0.90784 0.87083 0.87196 0.86966 0.82109 0.91952 0.93218 0.95212 0.93682 0.98362 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.15 0.37 -1.08 16 2 C -0.06 -0.61 5.79 -27.89 -0.16 -0.77 16 3 C 0.10 1.21 6.43 -81.88 -0.53 0.68 16 4 N -0.55 -4.86 5.90 -9.11 -0.05 -4.91 16 5 H 0.41 2.21 8.96 -40.82 -0.37 1.84 16 6 C -0.02 -0.19 11.89 -16.83 -0.20 -0.39 16 7 C -0.16 -1.96 10.56 -37.50 -0.40 -2.35 16 8 C -0.23 -3.15 6.29 -103.35 -0.65 -3.80 16 9 C 0.59 9.17 7.81 -12.59 -0.10 9.08 16 10 O -0.56 -9.72 14.74 5.25 0.08 -9.64 16 11 N -0.72 -10.54 5.02 -62.62 -0.31 -10.85 16 12 C 0.17 2.58 5.15 -5.20 -0.03 2.55 16 13 C -0.13 -2.05 5.25 -104.62 -0.55 -2.60 16 14 C -0.11 -1.74 9.67 -39.59 -0.38 -2.12 16 15 C -0.14 -2.18 10.05 -39.59 -0.40 -2.58 16 16 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 17 C -0.09 -1.80 9.14 -39.59 -0.36 -2.16 16 18 C -0.08 -1.46 5.88 -104.63 -0.62 -2.07 16 19 C 0.18 3.73 5.00 -5.19 -0.03 3.70 16 20 N -0.60 -14.45 1.73 -182.50 -0.32 -14.77 16 21 C 0.16 3.86 8.61 59.85 0.52 4.37 16 22 C -0.25 -6.58 9.18 -15.06 -0.14 -6.72 16 23 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 24 C 0.00 0.10 5.04 -17.43 -0.09 0.01 16 25 N -0.91 -25.08 10.78 55.49 0.60 -24.49 16 26 Si 0.90 21.33 29.58 -169.99 -5.03 16.30 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 1.24 6.75 -51.93 -0.35 0.89 16 35 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.63 7.70 -52.49 -0.40 1.23 16 37 H 0.40 5.72 7.59 -40.82 -0.31 5.41 16 38 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 39 H 0.07 1.19 7.22 -51.93 -0.37 0.81 16 40 H 0.11 1.43 8.00 -52.48 -0.42 1.01 16 41 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.16 3.97 5.76 -52.48 -0.30 3.67 16 44 H 0.06 1.27 7.51 -51.93 -0.39 0.88 16 45 H 0.05 0.98 7.30 -51.93 -0.38 0.60 16 46 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 47 H 0.04 1.16 7.21 -51.93 -0.37 0.79 16 48 H 0.00 -0.05 7.89 -51.93 -0.41 -0.46 16 49 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -30.71 400.09 -10.48 -41.19 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.34 Total: 9.98 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -4.13 Total: -8.83 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.09 Total: -55.02 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.71 -10.48 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672925148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.532 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds