Wall clock time and date at job start Wed Apr 1 2020 00:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47468 * 2 1 4 4 N 1.34655 * 125.80352 * 265.13600 * 3 2 1 5 5 H 0.97002 * 124.84950 * 0.05772 * 4 3 2 6 6 C 1.36441 * 110.30055 * 180.28962 * 4 3 2 7 7 C 1.34491 * 108.85331 * 359.74908 * 6 4 3 8 8 C 1.36767 * 125.80049 * 84.99610 * 3 2 1 9 9 C 1.47270 * 126.94289 * 359.97438 * 8 3 2 10 10 O 1.21626 * 119.99592 * 359.70417 * 9 8 3 11 11 N 1.34776 * 119.99822 * 179.70677 * 9 8 3 12 12 C 1.46498 * 119.99843 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47332 * 179.97438 * 12 11 9 14 14 C 1.38258 * 120.00519 * 255.37628 * 13 12 11 15 15 C 1.38204 * 119.99978 * 179.97438 * 14 13 12 16 16 C 1.38257 * 120.00299 * 359.79303 * 15 14 13 17 17 C 1.38209 * 119.99505 * 0.48755 * 16 15 14 18 18 C 1.38216 * 119.99806 * 75.40003 * 13 12 11 19 19 C 1.50700 * 119.99709 * 359.97438 * 18 13 12 20 20 N 1.46501 * 109.47027 * 178.01037 * 19 18 13 21 21 C 1.46504 * 119.99740 * 273.78239 * 20 19 18 22 22 C 1.36934 * 120.00397 * 93.78032 * 20 19 18 23 23 H 1.07996 * 120.00213 * 21.82087 * 22 20 19 24 24 C 1.38818 * 119.99814 * 201.82088 * 22 20 19 25 25 N 1.31610 * 120.00088 * 15.24611 * 24 22 20 26 26 Si 1.86800 * 119.99808 * 195.24690 * 24 22 20 27 27 H 1.48507 * 109.47003 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47256 * 119.99699 * 26 24 22 29 29 H 1.48496 * 109.47217 * 240.00374 * 26 24 22 30 30 H 1.09004 * 109.47055 * 300.00110 * 1 2 3 31 31 H 1.09001 * 109.47440 * 59.99758 * 1 2 3 32 32 H 1.09001 * 109.47549 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47055 * 239.99890 * 2 1 3 34 34 H 1.08997 * 109.47013 * 119.99993 * 2 1 3 35 35 H 1.08001 * 125.57459 * 179.72606 * 6 4 3 36 36 H 1.08001 * 126.83175 * 180.02562 * 7 6 4 37 37 H 0.96993 * 120.00058 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.46756 * 60.00053 * 12 11 9 39 39 H 1.08996 * 109.47328 * 300.00382 * 12 11 9 40 40 H 1.08005 * 119.99355 * 0.02562 * 14 13 12 41 41 H 1.08007 * 120.00091 * 180.02562 * 15 14 13 42 42 H 1.07998 * 119.99915 * 180.25336 * 16 15 14 43 43 H 1.08005 * 119.99269 * 179.76594 * 17 16 15 44 44 H 1.09000 * 109.47566 * 298.00417 * 19 18 13 45 45 H 1.08996 * 109.47640 * 58.00583 * 19 18 13 46 46 H 1.09001 * 109.47357 * 93.48398 * 21 20 19 47 47 H 1.09003 * 109.46965 * 213.48972 * 21 20 19 48 48 H 1.08999 * 109.46812 * 333.48521 * 21 20 19 49 49 H 0.97007 * 120.00215 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3823 2.1326 -1.0882 5 1 2.3476 1.8040 -2.0002 6 6 2.7975 3.3803 -0.7242 7 6 2.7152 3.4928 0.6134 8 6 2.2079 2.2073 1.1050 9 6 1.9461 1.8365 2.5060 10 8 1.5229 0.7279 2.7727 11 7 2.1753 2.7257 3.4926 12 6 1.9144 2.3570 4.8862 13 6 2.2506 3.5192 5.7847 14 6 3.4098 3.4979 6.5380 15 6 3.7183 4.5640 7.3616 16 6 2.8701 5.6537 7.4290 17 6 1.7084 5.6724 6.6803 18 6 1.4000 4.6062 5.8561 19 6 0.1365 4.6294 5.0350 20 7 -0.6095 5.8573 5.3214 21 6 -1.5404 5.9018 6.4518 22 6 -0.4368 6.9633 4.5327 23 1 -0.0520 6.8562 3.5293 24 6 -0.7563 8.2221 5.0230 25 7 -0.9345 8.3994 6.3148 26 14 -0.9332 9.6643 3.8491 27 1 -0.6839 9.2046 2.4591 28 1 -2.3074 10.2181 3.9488 29 1 0.0518 10.7167 4.2059 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 3.1372 4.1514 -1.3999 36 1 2.9713 4.3577 1.2074 37 1 2.5131 3.6097 3.2798 38 1 2.5302 1.4992 5.1564 39 1 0.8617 2.0997 5.0029 40 1 4.0745 2.6485 6.4821 41 1 4.6241 4.5476 7.9497 42 1 3.1133 6.4885 8.0695 43 1 1.0439 6.5220 6.7359 44 1 0.3910 4.5978 3.9756 45 1 -0.4768 3.7644 5.2872 46 1 -1.0263 6.2905 7.3309 47 1 -2.3804 6.5514 6.2053 48 1 -1.9073 4.8968 6.6602 49 1 -1.1581 9.2790 6.6574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672925148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:21 Heat of formation + Delta-G solvation = 34.058016 kcal Electronic energy + Delta-G solvation = -29787.670997 eV Core-core repulsion = 25908.068614 eV Total energy + Delta-G solvation = -3879.602384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.17231 -40.73703 -39.64473 -37.35238 -35.91104 -34.44161 -33.70157 -32.67545 -31.55252 -31.42503 -29.21728 -28.11582 -27.62122 -26.80471 -24.47212 -23.82587 -23.11272 -22.24010 -21.58422 -21.27646 -20.43410 -18.71243 -18.54116 -17.60645 -16.96563 -16.85466 -16.70234 -16.29895 -15.85742 -15.50696 -15.42810 -15.20829 -15.14821 -14.77419 -14.66481 -14.64677 -14.38148 -13.96511 -13.94372 -13.58426 -13.41154 -13.27744 -13.25252 -13.00323 -12.98416 -12.78676 -12.55647 -12.30615 -12.29345 -12.03658 -11.91871 -11.82881 -11.76512 -11.58633 -10.88073 -10.60558 -10.05725 -9.68280 -9.58383 -9.36679 -9.08463 -8.81238 -7.80313 -5.26447 0.45114 0.69379 0.81031 1.46284 1.49018 1.57434 1.57929 2.22983 2.52995 2.61162 2.65084 3.11164 3.34361 3.67628 3.80831 3.83931 4.11278 4.11686 4.17313 4.23625 4.34576 4.41103 4.45043 4.45859 4.57024 4.65562 4.71996 4.74948 4.79893 4.83572 4.84607 4.94792 5.01739 5.06836 5.10885 5.24970 5.30521 5.33985 5.35706 5.40593 5.54047 5.63197 5.68513 5.70072 5.83080 5.88455 6.00469 6.03460 6.29765 6.36688 6.65675 6.75788 7.17431 7.40960 7.87180 8.32882 9.23452 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.003610 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.411123 B = 7755.378551 C = 9324.711140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 C 0.105 3.895 4 N -0.537 5.537 5 H 0.433 0.567 6 C -0.002 4.002 7 C -0.193 4.193 8 C -0.267 4.267 9 C 0.585 3.415 10 O -0.583 6.583 11 N -0.713 5.713 12 C 0.177 3.823 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.090 4.090 19 C 0.187 3.813 20 N -0.608 5.608 21 C 0.176 3.824 22 C -0.254 4.254 23 H 0.066 0.934 24 C -0.043 4.043 25 N -0.930 5.930 26 Si 0.959 3.041 27 H -0.269 1.269 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.204 0.796 36 H 0.145 0.855 37 H 0.405 0.595 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.009 0.991 47 H 0.020 0.980 48 H 0.021 0.979 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 -14.346 -12.441 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.015 4.015 4 N -0.133 5.133 5 H 0.273 0.727 6 C -0.130 4.130 7 C -0.216 4.216 8 C -0.277 4.277 9 C 0.376 3.624 10 O -0.466 6.466 11 N -0.363 5.363 12 C 0.054 3.946 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.145 4.145 16 C -0.148 4.148 17 C -0.134 4.134 18 C -0.093 4.093 19 C 0.061 3.939 20 N -0.330 5.330 21 C 0.031 3.969 22 C -0.384 4.384 23 H 0.084 0.916 24 C -0.239 4.239 25 N -0.577 5.577 26 Si 0.788 3.212 27 H -0.193 1.193 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.220 0.780 36 H 0.162 0.838 37 H 0.240 0.760 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.027 0.973 47 H 0.038 0.962 48 H 0.039 0.961 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.412 -14.998 -12.316 22.024 hybrid contribution -0.302 1.851 -0.330 1.904 sum 10.111 -13.147 -12.647 20.857 Atomic orbital electron populations 1.21610 0.94185 1.02496 1.01158 1.20256 0.96477 0.88580 1.04245 1.20473 0.99787 0.95206 0.86029 1.41568 1.50967 1.11758 1.09039 0.72716 1.22208 1.06026 0.88564 0.96186 1.22251 1.07073 0.97058 0.95243 1.20224 1.17894 0.97651 0.91905 1.17693 0.76224 0.83628 0.84894 1.90687 1.48462 1.22584 1.84850 1.45810 1.67300 1.17377 1.05828 1.19968 1.00926 0.94505 0.79248 1.19705 0.96195 0.95356 1.00392 1.21212 0.95800 0.99204 0.96181 1.21314 1.00098 0.93348 0.99779 1.21383 0.94765 0.99161 0.99490 1.21471 0.97268 0.98978 0.95654 1.20965 0.97512 0.93539 0.97273 1.19891 0.89075 0.88289 0.96659 1.44066 1.45759 1.09795 1.33420 1.20561 0.91775 0.94965 0.89588 1.19417 1.39258 0.85429 0.94332 0.91575 1.25568 1.02294 0.99300 0.96723 1.70199 1.53596 1.21999 1.11915 0.85330 0.76708 0.79900 0.79276 1.19332 1.22103 1.22059 0.94861 0.92170 0.90771 0.88409 0.90046 0.77956 0.83752 0.76024 0.90089 0.92090 0.83648 0.83521 0.86244 0.86580 0.92142 0.92777 0.97322 0.96153 0.96071 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.89 71.98 0.71 -1.97 16 2 C -0.06 -1.09 5.79 29.85 0.17 -0.91 16 3 C 0.10 2.25 6.43 41.78 0.27 2.52 16 4 N -0.54 -7.85 5.90 -182.73 -1.08 -8.93 16 5 H 0.43 2.97 8.96 -92.71 -0.83 2.14 16 6 C 0.00 -0.03 11.89 83.12 0.99 0.95 16 7 C -0.19 -4.41 10.56 23.62 0.25 -4.16 16 8 C -0.27 -7.20 6.29 -19.04 -0.12 -7.32 16 9 C 0.58 18.38 7.81 86.62 0.68 19.06 16 10 O -0.58 -20.79 14.74 -4.11 -0.06 -20.85 16 11 N -0.71 -20.98 5.02 -470.26 -2.36 -23.34 16 12 C 0.18 5.21 5.15 85.63 0.44 5.66 16 13 C -0.12 -3.65 5.25 -19.87 -0.10 -3.75 16 14 C -0.11 -2.88 9.67 22.27 0.22 -2.66 16 15 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 16 C -0.13 -4.55 10.05 22.27 0.22 -4.32 16 17 C -0.12 -4.92 9.14 22.26 0.20 -4.72 16 18 C -0.09 -3.49 5.88 -19.87 -0.12 -3.61 16 19 C 0.19 7.89 5.00 85.63 0.43 8.32 16 20 N -0.61 -30.48 1.73 -731.30 -1.27 -31.75 16 21 C 0.18 8.86 8.61 127.77 1.10 9.97 16 22 C -0.25 -13.76 9.18 84.04 0.77 -12.99 16 23 H 0.07 3.54 7.84 -2.91 -0.02 3.51 16 24 C -0.04 -2.38 5.04 84.86 0.43 -1.95 16 25 N -0.93 -53.64 10.78 21.65 0.23 -53.41 16 26 Si 0.96 44.73 29.58 68.60 2.03 46.76 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 29 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.03 0.87 7.95 -2.39 -0.02 0.85 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.93 6.75 -2.39 -0.02 1.92 16 35 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 3.20 7.70 -2.91 -0.02 3.18 16 37 H 0.40 11.54 7.59 -92.71 -0.70 10.83 16 38 H 0.08 2.19 7.95 -2.38 -0.02 2.17 16 39 H 0.06 1.97 7.22 -2.39 -0.02 1.95 16 40 H 0.15 3.04 8.00 -2.91 -0.02 3.02 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 43 H 0.12 6.08 5.76 -2.91 -0.02 6.06 16 44 H 0.06 2.53 7.51 -2.39 -0.02 2.51 16 45 H 0.05 2.20 7.30 -2.39 -0.02 2.18 16 46 H 0.01 0.46 6.81 -2.39 -0.02 0.45 16 47 H 0.02 1.08 7.21 -2.39 -0.02 1.06 16 48 H 0.02 0.93 7.89 -2.39 -0.02 0.91 16 49 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -69.94 400.09 3.70 -66.24 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.56 Total: 30.53 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 6.76 Total: -5.24 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.47 Total: -117.44 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.94 3.70 -66.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672925148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.296 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds