Wall clock time and date at job start Wed Apr 1 2020 00:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39845 * 126.45608 * 2 1 4 4 C 1.35446 * 107.86070 * 180.26480 * 3 2 1 5 5 N 1.35530 * 108.87814 * 359.74247 * 4 3 2 6 6 H 0.96993 * 125.68411 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64226 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23714 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00037 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99581 * 0.02562 * 8 7 5 11 11 C 1.46496 * 119.99538 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47099 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.46951 * 54.99767 * 13 12 11 15 15 C 1.52997 * 109.47022 * 174.99789 * 13 12 11 16 16 C 1.50706 * 109.47198 * 184.99797 * 15 13 12 17 17 C 1.38238 * 119.99775 * 90.00136 * 16 15 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38233 * 120.00212 * 270.02182 * 16 15 13 22 22 N 1.46500 * 109.47099 * 294.99538 * 13 12 11 23 23 C 1.36928 * 120.00206 * 300.00457 * 22 13 12 24 24 H 1.08003 * 120.00236 * 359.97438 * 23 22 13 25 25 C 1.38814 * 120.00173 * 180.02562 * 23 22 13 26 26 N 1.31626 * 119.99972 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00196 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47586 * 89.99580 * 27 25 23 29 29 H 1.48510 * 109.47043 * 209.99933 * 27 25 23 30 30 H 1.48504 * 109.47009 * 329.99066 * 27 25 23 31 31 H 1.08996 * 109.47370 * 270.18321 * 1 2 3 32 32 H 1.09004 * 109.47396 * 30.18367 * 1 2 3 33 33 H 1.09000 * 109.47159 * 150.17849 * 1 2 3 34 34 H 1.07998 * 126.06379 * 0.02562 * 3 2 1 35 35 H 1.07999 * 125.56248 * 179.71970 * 4 3 2 36 36 H 0.96997 * 120.00021 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47603 * 59.99862 * 11 10 8 38 38 H 1.09004 * 109.47527 * 299.99896 * 11 10 8 39 39 H 1.08995 * 109.47557 * 59.99887 * 12 11 10 40 40 H 1.09002 * 109.47011 * 299.99660 * 12 11 10 41 41 H 1.09003 * 109.47286 * 65.00148 * 15 13 12 42 42 H 1.09002 * 109.47284 * 304.99570 * 15 13 12 43 43 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 44 44 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 45 45 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 46 46 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 47 47 H 1.07999 * 119.99956 * 0.02562 * 21 16 15 48 48 H 0.97003 * 119.99428 * 120.00064 * 22 13 12 49 49 H 0.96991 * 119.99810 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6929 -0.0060 5 7 3.6284 -0.6624 -0.0039 6 1 4.4190 -1.2243 -0.0068 7 6 2.3263 -1.1089 0.0040 8 6 1.8898 -2.5092 0.0091 9 8 0.7027 -2.7765 0.0156 10 7 2.8037 -3.4998 0.0066 11 6 2.3678 -4.8984 0.0111 12 6 3.5932 -5.8145 0.0076 13 6 3.1380 -7.2752 0.0130 14 1 2.4633 -7.4486 -0.8254 15 6 4.3576 -8.1900 -0.1163 16 6 3.9016 -9.6215 -0.2344 17 6 3.6502 -10.1662 -1.4798 18 6 3.2324 -11.4795 -1.5883 19 6 3.0667 -12.2482 -0.4514 20 6 3.3130 -11.7019 0.7943 21 6 3.7344 -10.3898 0.9025 22 7 2.4412 -7.5650 1.2687 23 6 3.0935 -7.4173 2.4635 24 1 4.1219 -7.0876 2.4803 25 6 2.4334 -7.6924 3.6533 26 7 1.1803 -8.0946 3.6329 27 14 3.3230 -7.4902 5.2833 28 1 3.1295 -6.1059 5.7847 29 1 2.7743 -8.4553 6.2698 30 1 4.7727 -7.7491 5.0915 31 1 -0.3634 0.0033 1.0276 32 1 -0.3634 0.8883 -0.5167 33 1 -0.3633 -0.8916 -0.5111 34 1 2.0135 2.1549 0.0004 35 1 4.4971 1.3253 -0.0118 36 1 3.7500 -3.2867 0.0010 37 1 1.7649 -5.0940 -0.8757 38 1 1.7733 -5.0909 0.9042 39 1 4.1957 -5.6189 0.8946 40 1 4.1881 -5.6222 -0.8853 41 1 4.9885 -8.0813 0.7660 42 1 4.9255 -7.9150 -1.0051 43 1 3.7801 -9.5657 -2.3681 44 1 3.0356 -11.9049 -2.5612 45 1 2.7407 -13.2743 -0.5362 46 1 3.1793 -12.3011 1.6828 47 1 3.9301 -9.9640 1.8755 48 1 1.5177 -7.8614 1.2536 49 1 0.7190 -8.2864 4.4643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676898369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:24 Heat of formation + Delta-G solvation = 12.184953 kcal Electronic energy + Delta-G solvation = -28936.319523 eV Core-core repulsion = 25055.768652 eV Total energy + Delta-G solvation = -3880.550871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.26286 -40.26958 -39.97353 -38.04404 -35.92587 -34.27572 -33.46307 -32.49996 -31.59354 -31.27974 -30.24044 -28.54705 -27.62947 -26.02635 -24.69844 -23.25467 -22.99981 -22.09099 -21.58713 -21.08349 -20.16497 -19.53982 -18.89640 -17.44339 -17.11904 -16.89702 -16.51733 -16.49853 -16.00012 -15.84557 -15.60048 -15.20597 -14.98366 -14.90776 -14.60290 -14.30675 -14.21968 -14.10160 -13.87799 -13.74900 -13.61083 -13.17358 -13.10833 -13.02226 -12.88389 -12.76587 -12.54459 -12.49198 -12.34753 -12.17302 -11.74100 -11.68291 -11.56506 -11.27958 -11.08506 -10.81566 -10.17266 -9.68937 -9.63585 -9.40185 -9.10180 -8.85144 -7.83654 -5.08380 0.47615 0.64530 0.71395 1.44252 1.45242 1.51976 1.84973 2.10930 2.30011 2.36049 2.59884 3.07405 3.51480 3.91354 3.92512 3.99784 4.15848 4.20960 4.26669 4.27385 4.30942 4.39024 4.40599 4.44512 4.59509 4.66456 4.78209 4.83388 4.86234 4.87500 4.87709 4.97267 5.01775 5.10258 5.14422 5.17009 5.26574 5.36968 5.41479 5.44768 5.49002 5.51681 5.63402 5.73036 5.78752 5.81705 5.98444 6.04140 6.34113 6.36784 6.51020 6.65851 7.19103 7.43935 8.20602 8.42931 9.40178 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.002761 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.885947 B =10139.764792 C =11558.465964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.098 4.098 3 C -0.231 4.231 4 C 0.051 3.949 5 N -0.528 5.528 6 H 0.430 0.570 7 C -0.089 4.089 8 C 0.576 3.424 9 O -0.576 6.576 10 N -0.714 5.714 11 C 0.139 3.861 12 C -0.124 4.124 13 C 0.181 3.819 14 H 0.063 0.937 15 C -0.084 4.084 16 C -0.072 4.072 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.108 4.108 22 N -0.722 5.722 23 C -0.197 4.197 24 H 0.078 0.922 25 C -0.073 4.073 26 N -0.967 5.967 27 Si 0.945 3.055 28 H -0.299 1.299 29 H -0.306 1.306 30 H -0.267 1.267 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.162 0.838 35 H 0.218 0.782 36 H 0.407 0.593 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.136 0.864 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.368 0.632 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 10.893 -13.998 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.254 4.254 4 C -0.086 4.086 5 N -0.126 5.126 6 H 0.270 0.730 7 C -0.201 4.201 8 C 0.365 3.635 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.016 3.984 12 C -0.163 4.163 13 C 0.071 3.929 14 H 0.081 0.919 15 C -0.123 4.123 16 C -0.072 4.072 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.126 4.126 22 N -0.360 5.360 23 C -0.329 4.329 24 H 0.096 0.904 25 C -0.265 4.265 26 N -0.619 5.619 27 Si 0.777 3.223 28 H -0.228 1.228 29 H -0.234 1.234 30 H -0.191 1.191 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.180 0.820 35 H 0.234 0.766 36 H 0.243 0.757 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.154 0.846 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.198 0.802 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.590 10.542 -13.874 20.390 hybrid contribution 0.185 -0.526 1.853 1.935 sum 10.775 10.017 -12.020 18.998 Atomic orbital electron populations 1.20297 0.90071 1.02531 1.01760 1.20294 0.96156 0.92166 1.02083 1.21109 0.92266 0.98953 1.13104 1.22733 1.00406 0.82544 1.02882 1.41938 1.06280 1.08021 1.56316 0.72980 1.20006 0.85647 0.92334 1.22148 1.17516 0.85604 0.84326 0.76016 1.90794 1.18134 1.84150 1.52576 1.45776 1.09610 1.06176 1.74931 1.21079 0.97886 0.79034 1.00419 1.22119 0.96124 0.95402 1.02700 1.20347 0.92933 0.91410 0.88178 0.91901 1.21049 0.98272 0.90874 1.02114 1.19944 0.98464 0.95945 0.92894 1.21302 1.00463 0.95955 0.96983 1.21381 0.99921 0.94370 0.99082 1.21309 1.01141 1.00768 0.92297 1.21295 1.00740 0.95759 0.98308 1.21136 0.98861 0.94026 0.98581 1.42503 1.12700 1.79717 1.01052 1.19270 0.95469 1.33610 0.84551 0.90405 1.25253 0.96742 1.04454 1.00071 1.69804 1.11496 1.55069 1.25568 0.85540 0.78571 0.76266 0.81890 1.22764 1.23352 1.19149 0.92272 0.89817 0.92812 0.82044 0.76584 0.75669 0.92751 0.94519 0.91911 0.88699 0.92493 0.88937 0.84081 0.83732 0.84599 0.86924 0.88453 0.80165 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 9.83 71.24 0.70 -1.69 16 2 C -0.10 -2.56 6.21 -19.56 -0.12 -2.68 16 3 C -0.23 -4.21 10.76 22.01 0.24 -3.97 16 4 C 0.05 0.67 11.89 83.48 0.99 1.66 16 5 N -0.53 -8.58 5.99 -183.63 -1.10 -9.68 16 6 H 0.43 4.13 8.19 -92.71 -0.76 3.38 16 7 C -0.09 -2.37 7.06 40.35 0.28 -2.08 16 8 C 0.58 19.27 7.79 86.45 0.67 19.94 16 9 O -0.58 -24.65 14.80 -4.32 -0.06 -24.71 16 10 N -0.71 -20.09 5.55 -467.08 -2.59 -22.68 16 11 C 0.14 4.69 5.56 86.38 0.48 5.17 16 12 C -0.12 -3.53 4.73 30.60 0.14 -3.39 16 13 C 0.18 6.12 2.67 44.99 0.12 6.24 16 14 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 15 C -0.08 -2.56 4.75 29.85 0.14 -2.41 16 16 C -0.07 -2.41 4.95 -19.86 -0.10 -2.51 16 17 C -0.13 -3.58 9.70 22.27 0.22 -3.36 16 18 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 19 C -0.14 -3.95 10.05 22.27 0.22 -3.72 16 20 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 21 C -0.11 -4.16 9.31 22.27 0.21 -3.95 16 22 N -0.72 -32.90 4.13 -322.94 -1.33 -34.23 16 23 C -0.20 -9.86 7.87 84.04 0.66 -9.20 16 24 H 0.08 3.71 6.64 -2.91 -0.02 3.69 16 25 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 26 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 27 Si 0.95 45.88 29.55 68.60 2.03 47.91 16 28 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 29 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 1.72 6.49 -2.39 -0.02 1.70 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.22 0.70 8.06 -2.91 -0.02 0.67 16 36 H 0.41 8.01 7.60 -92.71 -0.70 7.30 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.63 7.75 -2.38 -0.02 1.62 16 39 H 0.06 1.95 7.11 -2.39 -0.02 1.93 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.94 7.05 -2.39 -0.02 1.92 16 42 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 43 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 46 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 47 H 0.10 4.37 7.36 -2.91 -0.02 4.35 16 48 H 0.37 19.41 8.03 -92.71 -0.74 18.67 16 49 H 0.24 14.76 8.31 -92.72 -0.77 13.99 16 Total: -1.00 -76.26 404.81 1.77 -74.48 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -1.22 Total: 45.14 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.78 Total: -17.47 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -4.74 Total: -125.35 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.26 1.77 -74.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676898369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.669 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds