Wall clock time and date at job start Wed Apr 1 2020 00:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46239 * 5.45969 * 3 2 1 5 5 C 1.38220 * 118.36757 * 180.02562 * 4 3 2 6 6 C 1.39497 * 119.20504 * 0.02562 * 5 4 3 7 7 C 1.47996 * 119.56689 * 180.02562 * 6 5 4 8 8 O 1.21538 * 119.99977 * 359.71936 * 7 6 5 9 9 N 1.34777 * 119.99881 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47134 * 324.99127 * 10 9 7 12 12 C 1.53007 * 109.46776 * 204.99688 * 10 9 7 13 13 N 1.46497 * 109.47109 * 54.99979 * 12 10 9 14 14 C 1.36938 * 120.00086 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99804 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00353 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47298 * 60.00437 * 18 16 14 20 20 H 1.48502 * 109.46797 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47384 * 300.00213 * 18 16 14 22 22 C 1.52998 * 109.47265 * 84.99704 * 10 9 7 23 23 C 1.53000 * 109.47012 * 59.99976 * 22 10 9 24 24 C 1.52998 * 109.47012 * 179.97438 * 23 22 10 25 25 C 1.52998 * 109.47292 * 59.99935 * 24 23 22 26 26 C 1.53000 * 109.47145 * 299.99983 * 25 24 23 27 27 C 1.52994 * 109.46971 * 299.99784 * 22 10 9 28 28 N 1.32821 * 120.86286 * 0.27363 * 6 5 4 29 29 C 1.31299 * 121.78271 * 359.43115 * 28 6 5 30 30 H 4.52934 * 13.94761 * 359.97438 * 4 2 1 31 31 H 1.07998 * 120.81883 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.40075 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99532 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.46868 * 174.99878 * 12 10 9 35 35 H 1.08993 * 109.47014 * 294.99960 * 12 10 9 36 36 H 0.96998 * 120.00251 * 359.97438 * 13 12 10 37 37 H 0.96994 * 120.00595 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47080 * 179.97438 * 22 10 9 39 39 H 1.09002 * 109.47176 * 299.99964 * 23 22 10 40 40 H 1.09001 * 109.47368 * 59.99953 * 23 22 10 41 41 H 1.09002 * 109.47121 * 299.99997 * 24 23 22 42 42 H 1.09007 * 109.47327 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47162 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46987 * 59.99980 * 25 24 23 45 45 H 1.09002 * 109.47176 * 299.99882 * 26 25 24 46 46 H 1.09001 * 109.47368 * 179.97438 * 26 25 24 47 47 H 1.08994 * 109.47221 * 299.99929 * 27 22 10 48 48 H 1.09002 * 109.47269 * 60.00645 * 27 22 10 49 49 H 1.08000 * 119.64458 * 180.28983 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3162 -1.2002 -0.1148 5 6 4.6975 -1.1493 -0.1095 6 6 5.3326 0.0869 0.0098 7 6 6.8112 0.1507 0.0158 8 8 7.4639 -0.8703 -0.0776 9 7 7.4339 1.3405 0.1310 10 6 8.8974 1.4036 0.1376 11 1 9.2967 0.5254 0.6451 12 6 9.3501 2.6670 0.8724 13 7 8.7583 2.6912 2.2123 14 6 9.0236 3.7340 3.0593 15 1 9.6688 4.5388 2.7393 16 6 8.4625 3.7571 4.3287 17 7 7.6758 2.7766 4.7185 18 14 8.8239 5.1800 5.4838 19 1 8.3637 6.4491 4.8650 20 1 8.1092 4.9686 6.7682 21 1 10.2855 5.2538 5.7362 22 6 9.4129 1.4388 -1.3025 23 6 8.8524 2.6714 -2.0148 24 6 9.3684 2.7070 -3.4547 25 6 8.9163 1.4436 -4.1898 26 6 9.4767 0.2110 -3.4776 27 6 8.9602 0.1754 -2.0372 28 7 4.6278 1.2070 0.1228 29 6 3.3148 1.2014 0.1163 30 1 -1.0500 -0.0011 0.0004 31 1 2.7977 -2.1432 -0.2053 32 1 5.2781 -2.0558 -0.1965 33 1 6.9128 2.1549 0.2096 34 1 10.4370 2.6695 0.9551 35 1 9.0260 3.5465 0.3161 36 1 8.1786 1.9685 2.4995 37 1 7.2840 2.7925 5.6056 38 1 10.5019 1.4862 -1.2976 39 1 7.7635 2.6245 -2.0197 40 1 9.1749 3.5715 -1.4913 41 1 10.4574 2.7542 -3.4494 42 1 8.9688 3.5850 -3.9623 43 1 9.2842 1.4688 -5.2155 44 1 7.8273 1.3965 -4.1951 45 1 10.5657 0.2581 -3.4723 46 1 9.1542 -0.6891 -4.0010 47 1 9.3595 -0.7027 -1.5297 48 1 7.8712 0.1284 -2.0422 49 1 2.7762 2.1333 0.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698884510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:01 Heat of formation + Delta-G solvation = 47.688705 kcal Electronic energy + Delta-G solvation = -29924.893193 eV Core-core repulsion = 26045.881881 eV Total energy + Delta-G solvation = -3879.011312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.74314 -39.63528 -37.84760 -35.66441 -34.54888 -33.56900 -32.38985 -31.58807 -30.75790 -30.45037 -30.35857 -27.13120 -25.17326 -23.83104 -23.67804 -22.70887 -21.67571 -21.25015 -20.09501 -19.32789 -19.19977 -18.01015 -17.04962 -16.81952 -15.84155 -15.68773 -15.49150 -14.97995 -14.75116 -14.53850 -14.16537 -14.05114 -13.98539 -13.71793 -13.39577 -13.29535 -13.10548 -13.07793 -12.60246 -12.34104 -12.17042 -11.88587 -11.78608 -11.57450 -11.13472 -11.01696 -10.93465 -10.91552 -10.76747 -10.73605 -10.35080 -10.17840 -10.12391 -9.97881 -9.93874 -9.71983 -9.62383 -9.47994 -8.95792 -8.85162 -8.51223 -6.90756 -5.73436 -3.03005 0.24253 1.08072 2.40024 2.46281 3.21728 3.37806 3.45690 3.49901 3.50968 3.86717 3.94369 4.20894 4.58848 4.58953 4.76719 4.82210 4.86816 4.90279 4.93459 5.08363 5.28113 5.35417 5.48208 5.52340 5.55002 5.59160 5.61233 5.66657 5.69349 5.78621 5.78785 5.88341 5.90862 5.98664 6.04471 6.13411 6.19637 6.23293 6.35178 6.36809 6.39005 6.48973 6.52923 6.57695 6.68112 6.76378 6.98482 7.16987 7.58318 7.71141 7.96397 8.43942 8.50870 9.55807 10.12437 10.47553 11.48746 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.006239 B = 0.004484 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4486.922140 B = 6243.421382 C = 9688.574676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C -0.028 4.028 4 C -0.061 4.061 5 C -0.113 4.113 6 C 0.096 3.904 7 C 0.569 3.431 8 O -0.536 6.536 9 N -0.682 5.682 10 C 0.140 3.860 11 H 0.089 0.911 12 C 0.143 3.857 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.105 4.105 28 N -0.446 5.446 29 C 0.128 3.872 30 H 0.227 0.773 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.414 0.586 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 -6.510 -17.241 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C -0.030 4.030 4 C -0.087 4.087 5 C -0.133 4.133 6 C -0.042 4.042 7 C 0.353 3.647 8 O -0.414 6.414 9 N -0.332 5.332 10 C 0.036 3.964 11 H 0.107 0.893 12 C 0.015 3.985 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.112 4.112 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.143 4.143 28 N -0.156 5.156 29 C -0.033 4.033 30 H 0.243 0.757 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.251 0.749 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.299 -6.279 -17.134 19.654 hybrid contribution -1.038 0.176 0.903 1.387 sum -8.337 -6.103 -16.231 19.240 Atomic orbital electron populations 1.24916 0.95715 0.98679 0.98597 1.19705 0.91593 1.01917 1.01817 1.17157 0.87969 0.95147 1.02763 1.21626 0.93553 0.97793 0.95679 1.22047 0.94373 0.99299 0.97613 1.21464 0.94960 0.89591 0.98205 1.17675 0.85410 0.84357 0.77279 1.90770 1.65539 1.34306 1.50758 1.45793 1.07641 1.09066 1.70672 1.21389 0.79141 1.00833 0.95074 0.89329 1.21034 0.96633 0.93505 0.87321 1.42334 1.57934 1.26743 1.10498 1.19154 1.24138 0.99723 0.94289 0.91236 1.24728 1.00049 0.98226 0.97687 1.69657 1.35944 1.32555 1.19675 0.86287 0.77585 0.81979 0.80411 1.21287 1.21768 1.21310 1.21522 1.00317 0.95362 0.94044 1.21645 1.00789 0.98109 0.94877 1.21519 1.00669 0.97205 0.96056 1.21526 1.00522 0.95194 0.98309 1.21579 1.00276 0.97305 0.96546 1.21629 1.01041 0.97477 0.94116 1.67645 1.08135 1.29928 1.09895 1.22967 0.89147 0.97116 0.94052 0.75661 0.83859 0.82859 0.74859 0.94967 0.95244 0.78003 0.93519 0.90426 0.91998 0.91184 0.92191 0.92473 0.92753 0.92452 0.92347 0.92654 0.91281 0.92193 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.15 -1.55 13.28 -38.84 -0.52 -2.07 16 3 C -0.03 -0.32 5.75 -106.69 -0.61 -0.94 16 4 C -0.06 -0.66 9.89 -38.93 -0.39 -1.05 16 5 C -0.11 -1.43 9.61 -39.12 -0.38 -1.81 16 6 C 0.10 1.46 6.75 -82.97 -0.56 0.90 16 7 C 0.57 9.62 6.15 -12.26 -0.08 9.54 16 8 O -0.54 -9.76 13.45 5.33 0.07 -9.69 16 9 N -0.68 -11.47 3.63 -54.70 -0.20 -11.67 16 10 C 0.14 2.36 2.16 -67.93 -0.15 2.21 16 11 H 0.09 1.67 7.57 -51.93 -0.39 1.27 16 12 C 0.14 2.78 5.60 -4.04 -0.02 2.76 16 13 N -0.73 -18.27 5.43 -59.91 -0.33 -18.59 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C -0.09 -1.27 2.07 -90.62 -0.19 -1.46 16 23 C -0.12 -1.49 4.70 -26.73 -0.13 -1.62 16 24 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 25 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 26 C -0.12 -1.37 5.93 -26.70 -0.16 -1.52 16 27 C -0.11 -1.43 3.73 -26.70 -0.10 -1.53 16 28 N -0.45 -6.71 9.51 -9.49 -0.09 -6.80 16 29 C 0.13 1.62 10.91 -17.15 -0.19 1.43 16 30 H 0.23 0.87 7.80 -54.09 -0.42 0.45 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.15 1.79 7.63 -52.49 -0.40 1.39 16 33 H 0.41 7.22 7.92 -40.82 -0.32 6.90 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.56 6.17 -51.93 -0.32 0.24 16 36 H 0.39 10.41 7.33 -40.82 -0.30 10.11 16 37 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.84 7.60 -51.93 -0.39 0.44 16 40 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 48 H 0.06 0.90 5.78 -51.93 -0.30 0.60 16 49 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -32.10 398.12 -9.64 -41.74 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -7.35 Total: 15.19 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.45 Total: -6.00 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.11 Total: -64.68 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.10 -9.64 -41.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698884510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.428 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds