Wall clock time and date at job start Wed Apr 1 2020 00:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46239 * 5.45969 * 3 2 1 5 5 C 1.38220 * 118.36757 * 180.02562 * 4 3 2 6 6 C 1.39497 * 119.20504 * 0.02562 * 5 4 3 7 7 C 1.47996 * 119.56689 * 180.02562 * 6 5 4 8 8 O 1.21538 * 119.99977 * 359.71936 * 7 6 5 9 9 N 1.34777 * 119.99881 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47134 * 324.99127 * 10 9 7 12 12 C 1.53007 * 109.46776 * 204.99688 * 10 9 7 13 13 N 1.46497 * 109.47109 * 54.99979 * 12 10 9 14 14 C 1.36938 * 120.00086 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99804 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00353 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47298 * 60.00437 * 18 16 14 20 20 H 1.48502 * 109.46797 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47384 * 300.00213 * 18 16 14 22 22 C 1.52998 * 109.47265 * 84.99704 * 10 9 7 23 23 C 1.53000 * 109.47012 * 59.99976 * 22 10 9 24 24 C 1.52998 * 109.47012 * 179.97438 * 23 22 10 25 25 C 1.52998 * 109.47292 * 59.99935 * 24 23 22 26 26 C 1.53000 * 109.47145 * 299.99983 * 25 24 23 27 27 C 1.52994 * 109.46971 * 299.99784 * 22 10 9 28 28 N 1.32821 * 120.86286 * 0.27363 * 6 5 4 29 29 C 1.31299 * 121.78271 * 359.43115 * 28 6 5 30 30 H 4.52934 * 13.94761 * 359.97438 * 4 2 1 31 31 H 1.07998 * 120.81883 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.40075 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99532 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.46868 * 174.99878 * 12 10 9 35 35 H 1.08993 * 109.47014 * 294.99960 * 12 10 9 36 36 H 0.96998 * 120.00251 * 359.97438 * 13 12 10 37 37 H 0.96994 * 120.00595 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47080 * 179.97438 * 22 10 9 39 39 H 1.09002 * 109.47176 * 299.99964 * 23 22 10 40 40 H 1.09001 * 109.47368 * 59.99953 * 23 22 10 41 41 H 1.09002 * 109.47121 * 299.99997 * 24 23 22 42 42 H 1.09007 * 109.47327 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47162 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46987 * 59.99980 * 25 24 23 45 45 H 1.09002 * 109.47176 * 299.99882 * 26 25 24 46 46 H 1.09001 * 109.47368 * 179.97438 * 26 25 24 47 47 H 1.08994 * 109.47221 * 299.99929 * 27 22 10 48 48 H 1.09002 * 109.47269 * 60.00645 * 27 22 10 49 49 H 1.08000 * 119.64458 * 180.28983 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3162 -1.2002 -0.1148 5 6 4.6975 -1.1493 -0.1095 6 6 5.3326 0.0869 0.0098 7 6 6.8112 0.1507 0.0158 8 8 7.4639 -0.8703 -0.0776 9 7 7.4339 1.3405 0.1310 10 6 8.8974 1.4036 0.1376 11 1 9.2967 0.5254 0.6451 12 6 9.3501 2.6670 0.8724 13 7 8.7583 2.6912 2.2123 14 6 9.0236 3.7340 3.0593 15 1 9.6688 4.5388 2.7393 16 6 8.4625 3.7571 4.3287 17 7 7.6758 2.7766 4.7185 18 14 8.8239 5.1800 5.4838 19 1 8.3637 6.4491 4.8650 20 1 8.1092 4.9686 6.7682 21 1 10.2855 5.2538 5.7362 22 6 9.4129 1.4388 -1.3025 23 6 8.8524 2.6714 -2.0148 24 6 9.3684 2.7070 -3.4547 25 6 8.9163 1.4436 -4.1898 26 6 9.4767 0.2110 -3.4776 27 6 8.9602 0.1754 -2.0372 28 7 4.6278 1.2070 0.1228 29 6 3.3148 1.2014 0.1163 30 1 -1.0500 -0.0011 0.0004 31 1 2.7977 -2.1432 -0.2053 32 1 5.2781 -2.0558 -0.1965 33 1 6.9128 2.1549 0.2096 34 1 10.4370 2.6695 0.9551 35 1 9.0260 3.5465 0.3161 36 1 8.1786 1.9685 2.4995 37 1 7.2840 2.7925 5.6056 38 1 10.5019 1.4862 -1.2976 39 1 7.7635 2.6245 -2.0197 40 1 9.1749 3.5715 -1.4913 41 1 10.4574 2.7542 -3.4494 42 1 8.9688 3.5850 -3.9623 43 1 9.2842 1.4688 -5.2155 44 1 7.8273 1.3965 -4.1951 45 1 10.5657 0.2581 -3.4723 46 1 9.1542 -0.6891 -4.0010 47 1 9.3595 -0.7027 -1.5297 48 1 7.8712 0.1284 -2.0422 49 1 2.7762 2.1333 0.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698884510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:00 Heat of formation + Delta-G solvation = 28.881662 kcal Electronic energy + Delta-G solvation = -29925.708728 eV Core-core repulsion = 26045.881881 eV Total energy + Delta-G solvation = -3879.826847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.88585 -40.76640 -39.00952 -37.17365 -35.48168 -35.24409 -33.39313 -33.02520 -32.21463 -31.59150 -31.34786 -28.67736 -26.38537 -25.44684 -24.67886 -23.97615 -22.98012 -22.45456 -21.27444 -20.36749 -20.10173 -19.44507 -18.86056 -17.92158 -17.01810 -16.81209 -16.54276 -16.45637 -16.05859 -15.87996 -15.37488 -15.27283 -15.09636 -14.90794 -14.84883 -14.69462 -14.39262 -14.22199 -13.83684 -13.54055 -13.44476 -13.21586 -12.91591 -12.77238 -12.65124 -12.56207 -12.26828 -12.07995 -11.99288 -11.93217 -11.89187 -11.76149 -11.37949 -11.29650 -11.07808 -10.96159 -10.92756 -10.71275 -10.56922 -9.98656 -9.76009 -8.98976 -7.92614 -5.22319 -0.74274 0.13286 1.43834 1.47504 1.50751 1.56621 1.70093 2.10469 2.25694 2.56804 2.91647 3.02237 3.27669 3.41333 3.60491 3.70927 3.76099 3.80012 3.88867 3.95687 4.12083 4.16739 4.18303 4.28217 4.48481 4.50523 4.58122 4.63658 4.67577 4.69851 4.72737 4.75815 4.82278 4.90358 4.91762 5.05315 5.08128 5.15677 5.24588 5.26988 5.33046 5.34703 5.41692 5.45570 5.50968 5.51783 5.59732 5.66496 6.27094 6.40284 6.51408 6.73034 7.17333 7.34316 8.08389 8.32130 9.30355 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.006239 B = 0.004484 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4486.922140 B = 6243.421382 C = 9688.574676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.210 4.210 3 C -0.016 4.016 4 C -0.057 4.057 5 C -0.110 4.110 6 C 0.063 3.937 7 C 0.566 3.434 8 O -0.558 6.558 9 N -0.682 5.682 10 C 0.149 3.851 11 H 0.063 0.937 12 C 0.145 3.855 13 N -0.742 5.742 14 C -0.244 4.244 15 H 0.079 0.921 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.974 3.026 19 H -0.276 1.276 20 H -0.299 1.299 21 H -0.278 1.278 22 C -0.084 4.084 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.097 4.097 28 N -0.469 5.469 29 C 0.112 3.888 30 H 0.267 0.733 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.411 0.589 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.043 0.957 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 -5.945 -18.850 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.210 4.210 3 C -0.018 4.018 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.074 4.074 7 C 0.351 3.649 8 O -0.437 6.437 9 N -0.331 5.331 10 C 0.045 3.955 11 H 0.081 0.919 12 C 0.018 3.982 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.097 0.903 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.202 1.202 20 H -0.225 1.225 21 H -0.204 1.204 22 C -0.104 4.104 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.135 4.135 28 N -0.180 5.180 29 C -0.049 4.049 30 H 0.283 0.717 31 H 0.193 0.807 32 H 0.177 0.823 33 H 0.247 0.753 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.484 -5.696 -18.790 21.389 hybrid contribution -0.820 -0.036 1.359 1.588 sum -9.304 -5.732 -17.431 20.573 Atomic orbital electron populations 1.25900 0.96378 0.95652 0.94862 1.19803 0.91781 1.04752 1.04701 1.17308 0.89178 0.94776 1.00541 1.21964 0.92660 0.99049 0.94524 1.22166 0.95411 0.98496 0.97042 1.21291 0.93964 0.90844 1.01304 1.17997 0.86440 0.83888 0.76526 1.90737 1.66330 1.34747 1.51878 1.45751 1.07464 1.09044 1.70860 1.21236 0.79413 0.98286 0.96613 0.91870 1.21172 0.96498 0.95260 0.85220 1.42518 1.57989 1.25765 1.12258 1.19605 1.23144 1.00159 0.94668 0.90271 1.25554 1.00578 1.00907 0.99523 1.69839 1.37679 1.34746 1.19712 0.85213 0.77503 0.79164 0.77859 1.20177 1.22504 1.20443 1.21459 1.00736 0.96246 0.91937 1.21589 1.00092 0.97003 0.96296 1.21503 1.01230 0.97863 0.94443 1.21509 1.00052 0.94461 0.99222 1.21555 1.00840 0.98174 0.94718 1.21501 0.99896 0.96420 0.95698 1.67540 1.09409 1.30292 1.10730 1.23305 0.88535 0.98574 0.94451 0.71709 0.80653 0.82301 0.75309 0.94431 0.93955 0.79592 0.94244 0.89383 0.93106 0.91609 0.91208 0.91314 0.90733 0.93259 0.91301 0.92061 0.93216 0.93870 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 19.25 74.32 1.43 0.06 16 2 C -0.21 -3.94 13.28 30.02 0.40 -3.54 16 3 C -0.02 -0.36 5.75 -21.20 -0.12 -0.48 16 4 C -0.06 -1.20 9.89 22.69 0.22 -0.97 16 5 C -0.11 -2.89 9.61 22.57 0.22 -2.67 16 6 C 0.06 2.03 6.75 41.89 0.28 2.32 16 7 C 0.57 20.50 6.15 86.83 0.53 21.04 16 8 O -0.56 -21.69 13.45 -3.84 -0.05 -21.74 16 9 N -0.68 -24.45 3.63 -445.26 -1.62 -26.06 16 10 C 0.15 5.25 2.16 44.99 0.10 5.35 16 11 H 0.06 2.54 7.57 -2.39 -0.02 2.52 16 12 C 0.15 5.76 5.60 86.38 0.48 6.24 16 13 N -0.74 -38.21 5.43 -343.45 -1.87 -40.07 16 14 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 15 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 16 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 17 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 18 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 C -0.08 -2.34 2.07 -10.80 -0.02 -2.36 16 23 C -0.11 -2.81 4.70 30.59 0.14 -2.67 16 24 C -0.11 -2.26 5.92 30.59 0.18 -2.08 16 25 C -0.11 -2.25 5.92 30.59 0.18 -2.07 16 26 C -0.12 -2.50 5.93 30.61 0.18 -2.32 16 27 C -0.10 -2.71 3.73 30.61 0.11 -2.60 16 28 N -0.47 -14.90 9.51 -183.93 -1.75 -16.65 16 29 C 0.11 2.91 10.91 85.18 0.93 3.84 16 30 H 0.27 0.66 7.80 -4.42 -0.03 0.62 16 31 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.16 3.85 7.63 -2.91 -0.02 3.83 16 33 H 0.41 15.27 7.92 -92.71 -0.73 14.53 16 34 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.04 1.61 6.17 -2.39 -0.01 1.59 16 36 H 0.37 21.03 7.33 -92.71 -0.68 20.35 16 37 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 1.39 7.60 -2.39 -0.02 1.37 16 40 H 0.07 1.69 6.32 -2.39 -0.02 1.68 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 1.56 7.53 -2.39 -0.02 1.54 16 48 H 0.04 1.35 5.78 -2.39 -0.01 1.33 16 49 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -71.63 398.12 3.15 -68.49 By element: Atomic # 1 Polarization: 47.83 SS G_CDS: -0.44 Total: 47.39 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.56 Total: 0.44 kcal Atomic # 7 Polarization: -138.30 SS G_CDS: -4.95 Total: -143.25 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -71.63 3.15 -68.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698884510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.368 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds