Wall clock time and date at job start Wed Apr 1 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 C 1.52997 * 109.47516 * 119.99875 * 2 1 3 5 5 H 1.08999 * 109.46983 * 300.00443 * 4 2 1 6 6 C 1.52993 * 109.47602 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47559 * 185.00002 * 6 4 2 8 8 C 1.34770 * 119.99990 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00347 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99790 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47190 * 180.02562 * 10 8 7 12 12 C 1.36207 * 120.67038 * 264.72362 * 11 10 8 13 13 N 1.32578 * 121.87881 * 179.74767 * 12 11 10 14 14 C 1.31260 * 122.77318 * 0.54283 * 13 12 11 15 15 C 1.40393 * 119.88301 * 359.73444 * 14 13 12 16 16 C 1.40386 * 122.08024 * 179.97438 * 15 14 13 17 17 C 1.36164 * 119.51655 * 179.97438 * 16 15 14 18 18 C 1.39376 * 121.08963 * 0.04351 * 17 16 15 19 19 C 1.36213 * 121.02395 * 359.97229 * 18 17 16 20 20 C 1.40235 * 119.48300 * 0.02562 * 19 18 17 21 21 N 1.46506 * 109.46691 * 60.00182 * 4 2 1 22 22 C 1.36939 * 120.00073 * 274.72524 * 21 4 2 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 4 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 4 25 25 N 1.31622 * 120.00455 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00168 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46615 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47374 * 119.99782 * 26 24 22 29 29 H 1.48495 * 109.47187 * 240.00172 * 26 24 22 30 30 H 1.08999 * 109.47357 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47049 * 60.00068 * 1 2 3 32 32 H 1.09002 * 109.46430 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47271 * 240.00866 * 2 1 3 34 34 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46989 * 300.00360 * 3 2 1 36 36 H 1.08999 * 109.47016 * 59.99881 * 3 2 1 37 37 H 1.09002 * 109.47378 * 305.00625 * 6 4 2 38 38 H 1.09004 * 109.46895 * 64.99844 * 6 4 2 39 39 H 0.96997 * 120.00009 * 0.02562 * 7 6 4 40 40 H 1.08997 * 109.47232 * 299.99988 * 10 8 7 41 41 H 1.08995 * 109.46819 * 60.00788 * 10 8 7 42 42 H 1.08009 * 119.05769 * 0.02562 * 12 11 10 43 43 H 1.08003 * 120.05677 * 179.74617 * 14 13 12 44 44 H 1.08008 * 120.23955 * 0.04050 * 16 15 14 45 45 H 1.08002 * 119.45282 * 180.02562 * 17 16 15 46 46 H 1.08005 * 119.48958 * 179.97438 * 18 17 16 47 47 H 1.08006 * 120.26037 * 179.97438 * 19 18 17 48 48 H 0.97005 * 119.99811 * 95.00317 * 21 4 2 49 49 H 0.97000 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5128 2.3809 8 6 5.3835 -1.6540 2.5826 9 8 6.1716 -1.1248 1.8277 10 6 5.8860 -2.4694 3.7461 11 6 7.3930 -2.4687 3.7465 12 6 8.0884 -3.4855 3.1652 13 7 9.4138 -3.5067 3.1474 14 6 10.1470 -2.5641 3.6923 15 6 9.5279 -1.4730 4.3226 16 6 10.2668 -0.4398 4.9205 17 6 9.6124 0.5944 5.5172 18 6 8.2198 0.6444 5.5455 19 6 7.4702 -0.3401 4.9762 20 6 8.1097 -1.4211 4.3523 21 7 1.5518 -2.1025 1.2491 22 6 0.3125 -2.3906 1.7555 23 1 -0.3051 -1.5995 2.1545 24 6 -0.1499 -3.6994 1.7559 25 7 0.6025 -4.6634 1.2692 26 14 -1.8407 -4.0924 2.4460 27 1 -2.4815 -2.8423 2.9275 28 1 -2.6798 -4.7017 1.3830 29 1 -1.7046 -5.0456 3.5765 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 3.1300 1.4427 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.9338 -1.1546 0.3181 38 1 3.9330 0.3033 1.3393 39 1 3.4283 -1.9363 2.9845 40 1 5.5226 -2.0355 4.6777 41 1 5.5229 -3.4931 3.6560 42 1 7.5444 -4.2953 2.7018 43 1 11.2245 -2.6277 3.6556 44 1 11.3465 -0.4646 4.9062 45 1 10.1818 1.3889 5.9765 46 1 7.7273 1.4768 6.0264 47 1 6.3918 -0.2891 5.0057 48 1 2.1080 -2.8135 0.8941 49 1 0.2796 -5.5781 1.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698967535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:58 Heat of formation + Delta-G solvation = 13.750086 kcal Electronic energy + Delta-G solvation = -29244.788998 eV Core-core repulsion = 25364.305996 eV Total energy + Delta-G solvation = -3880.483001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10568 -39.32203 -37.47954 -37.24061 -34.22174 -33.83402 -33.15982 -31.34009 -30.66204 -30.30666 -28.73906 -27.27377 -26.08764 -24.19178 -23.74539 -23.57910 -22.16820 -21.33216 -20.10337 -19.25141 -18.09798 -17.71196 -17.41981 -16.62430 -16.53167 -15.74312 -15.37608 -15.01166 -14.70664 -14.49556 -14.35929 -13.99863 -13.87585 -13.70040 -13.49056 -13.41787 -13.24129 -12.91093 -12.73922 -12.35425 -12.24106 -12.06476 -11.99616 -11.76611 -11.65528 -11.19819 -11.07470 -10.99322 -10.86372 -10.66763 -10.32541 -10.22259 -10.11770 -9.98658 -9.62281 -9.57409 -9.50891 -9.19224 -8.96694 -8.64076 -8.12966 -7.07277 -5.86261 -3.15652 0.23394 0.80318 1.78223 2.89367 2.93932 3.35744 3.42565 3.44675 3.53161 4.02736 4.23487 4.42342 4.49925 4.57405 4.61163 4.74213 4.84258 5.00718 5.02696 5.14169 5.21961 5.30999 5.36735 5.41491 5.50193 5.54291 5.60420 5.63087 5.72391 5.75568 5.87240 5.89287 5.93292 5.97891 6.15676 6.21162 6.21474 6.32534 6.34626 6.42262 6.50531 6.51939 6.59824 6.65094 6.69266 6.90127 7.04109 7.26286 7.62943 7.89031 7.91222 8.30931 8.53722 9.43149 9.97709 10.33701 11.35471 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.002659 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.641854 B =10526.190791 C =11533.661540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.114 3.886 7 N -0.712 5.712 8 C 0.512 3.488 9 O -0.545 6.545 10 C -0.103 4.103 11 C -0.089 4.089 12 C 0.086 3.914 13 N -0.483 5.483 14 C 0.137 3.863 15 C -0.112 4.112 16 C -0.089 4.089 17 C -0.122 4.122 18 C -0.101 4.101 19 C -0.105 4.105 20 C -0.008 4.008 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.410 0.590 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.592 9.706 8.512 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.010 4.010 7 N -0.363 5.363 8 C 0.297 3.703 9 O -0.423 6.423 10 C -0.144 4.144 11 C -0.091 4.091 12 C -0.057 4.057 13 N -0.189 5.189 14 C -0.035 4.035 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.140 4.140 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.014 4.014 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.247 0.753 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.170 0.830 43 H 0.178 0.822 44 H 0.149 0.851 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.233 9.294 7.599 20.190 hybrid contribution -1.659 0.032 0.765 1.827 sum 14.574 9.326 8.364 19.218 Atomic orbital electron populations 1.21814 0.94925 1.03886 0.98998 1.21729 0.96916 0.94395 1.00079 1.21942 1.00464 0.97356 1.00921 1.20537 0.89310 0.88186 0.95964 0.92911 1.21728 0.95636 0.94763 0.88891 1.45979 1.06498 1.52845 1.31012 1.20306 0.82648 0.81211 0.86147 1.90702 1.55494 1.48705 1.47427 1.20621 0.91691 1.03113 0.98974 1.20038 0.95145 0.95093 0.98845 1.22072 0.89589 0.97769 0.96248 1.67415 1.07476 1.27478 1.16581 1.23140 0.99875 0.88428 0.92017 1.19005 0.93338 0.97566 1.01464 1.20953 0.99749 0.93255 0.96895 1.20896 0.94552 0.98616 0.99965 1.20967 0.94074 0.98496 0.98529 1.20983 1.00190 0.93570 0.97514 1.17969 0.92503 0.94528 0.96356 1.42472 1.18268 1.01857 1.73685 1.19232 0.92983 0.92369 1.32159 0.90891 1.24728 0.98294 0.95909 1.01770 1.69666 1.36881 0.99898 1.51196 0.86206 0.84288 0.77936 0.78278 1.20563 1.21936 1.21930 0.94069 0.94991 0.89515 0.91910 0.93082 0.93555 0.93217 0.91978 0.91710 0.75320 0.87803 0.87025 0.82958 0.82176 0.85072 0.85727 0.85659 0.85367 0.78090 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.28 37.16 0.31 -2.14 16 2 C -0.11 -1.83 2.69 -90.62 -0.24 -2.07 16 3 C -0.15 -2.06 8.84 37.16 0.33 -1.74 16 4 C 0.17 3.02 2.18 -67.93 -0.15 2.87 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.88 4.73 -4.05 -0.02 1.86 16 7 N -0.71 -11.11 5.39 -60.30 -0.32 -11.44 16 8 C 0.51 7.99 7.82 -10.98 -0.09 7.90 16 9 O -0.55 -10.45 16.03 5.56 0.09 -10.36 16 10 C -0.10 -1.27 5.31 -29.03 -0.15 -1.42 16 11 C -0.09 -1.19 4.40 -104.44 -0.46 -1.65 16 12 C 0.09 1.20 10.72 -17.96 -0.19 1.00 16 13 N -0.48 -6.69 10.30 -13.16 -0.14 -6.83 16 14 C 0.14 1.58 11.05 -16.99 -0.19 1.39 16 15 C -0.11 -1.32 5.74 -106.86 -0.61 -1.93 16 16 C -0.09 -0.80 9.81 -39.52 -0.39 -1.19 16 17 C -0.12 -1.04 9.94 -39.90 -0.40 -1.44 16 18 C -0.10 -0.96 9.95 -39.89 -0.40 -1.36 16 19 C -0.10 -1.20 9.33 -39.56 -0.37 -1.56 16 20 C -0.01 -0.11 5.75 -106.82 -0.61 -0.72 16 21 N -0.72 -15.80 4.44 -53.43 -0.24 -16.03 16 22 C -0.24 -5.79 7.58 -15.06 -0.11 -5.91 16 23 H 0.07 1.76 7.42 -52.48 -0.39 1.38 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 26 Si 0.90 21.03 29.55 -169.99 -5.02 16.00 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.81 6.03 -51.93 -0.31 1.50 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.02 6.71 -51.93 -0.35 0.67 16 39 H 0.41 6.36 8.14 -40.82 -0.33 6.03 16 40 H 0.10 1.03 6.83 -51.93 -0.35 0.68 16 41 H 0.11 1.22 8.05 -51.93 -0.42 0.81 16 42 H 0.15 1.90 8.05 -52.48 -0.42 1.48 16 43 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 44 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 47 H 0.13 1.34 6.65 -52.48 -0.35 0.99 16 48 H 0.39 9.31 7.80 -40.82 -0.32 8.99 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -31.18 399.39 -10.10 -41.28 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -7.37 Total: 15.16 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.84 Total: -8.47 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.03 Total: -59.63 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.18 -10.10 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698967535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.033 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds