Wall clock time and date at job start Wed Apr 1 2020 01:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 C 1.52997 * 109.47516 * 119.99875 * 2 1 3 5 5 H 1.08999 * 109.46983 * 300.00443 * 4 2 1 6 6 C 1.52993 * 109.47602 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47559 * 185.00002 * 6 4 2 8 8 C 1.34770 * 119.99990 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00347 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99790 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47190 * 180.02562 * 10 8 7 12 12 C 1.36207 * 120.67038 * 264.72362 * 11 10 8 13 13 N 1.32578 * 121.87881 * 179.74767 * 12 11 10 14 14 C 1.31260 * 122.77318 * 0.54283 * 13 12 11 15 15 C 1.40393 * 119.88301 * 359.73444 * 14 13 12 16 16 C 1.40386 * 122.08024 * 179.97438 * 15 14 13 17 17 C 1.36164 * 119.51655 * 179.97438 * 16 15 14 18 18 C 1.39376 * 121.08963 * 0.04351 * 17 16 15 19 19 C 1.36213 * 121.02395 * 359.97229 * 18 17 16 20 20 C 1.40235 * 119.48300 * 0.02562 * 19 18 17 21 21 N 1.46506 * 109.46691 * 60.00182 * 4 2 1 22 22 C 1.36939 * 120.00073 * 274.72524 * 21 4 2 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 4 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 4 25 25 N 1.31622 * 120.00455 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00168 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46615 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47374 * 119.99782 * 26 24 22 29 29 H 1.48495 * 109.47187 * 240.00172 * 26 24 22 30 30 H 1.08999 * 109.47357 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47049 * 60.00068 * 1 2 3 32 32 H 1.09002 * 109.46430 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47271 * 240.00866 * 2 1 3 34 34 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46989 * 300.00360 * 3 2 1 36 36 H 1.08999 * 109.47016 * 59.99881 * 3 2 1 37 37 H 1.09002 * 109.47378 * 305.00625 * 6 4 2 38 38 H 1.09004 * 109.46895 * 64.99844 * 6 4 2 39 39 H 0.96997 * 120.00009 * 0.02562 * 7 6 4 40 40 H 1.08997 * 109.47232 * 299.99988 * 10 8 7 41 41 H 1.08995 * 109.46819 * 60.00788 * 10 8 7 42 42 H 1.08009 * 119.05769 * 0.02562 * 12 11 10 43 43 H 1.08003 * 120.05677 * 179.74617 * 14 13 12 44 44 H 1.08008 * 120.23955 * 0.04050 * 16 15 14 45 45 H 1.08002 * 119.45282 * 180.02562 * 17 16 15 46 46 H 1.08005 * 119.48958 * 179.97438 * 18 17 16 47 47 H 1.08006 * 120.26037 * 179.97438 * 19 18 17 48 48 H 0.97005 * 119.99811 * 95.00317 * 21 4 2 49 49 H 0.97000 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5128 2.3809 8 6 5.3835 -1.6540 2.5826 9 8 6.1716 -1.1248 1.8277 10 6 5.8860 -2.4694 3.7461 11 6 7.3930 -2.4687 3.7465 12 6 8.0884 -3.4855 3.1652 13 7 9.4138 -3.5067 3.1474 14 6 10.1470 -2.5641 3.6923 15 6 9.5279 -1.4730 4.3226 16 6 10.2668 -0.4398 4.9205 17 6 9.6124 0.5944 5.5172 18 6 8.2198 0.6444 5.5455 19 6 7.4702 -0.3401 4.9762 20 6 8.1097 -1.4211 4.3523 21 7 1.5518 -2.1025 1.2491 22 6 0.3125 -2.3906 1.7555 23 1 -0.3051 -1.5995 2.1545 24 6 -0.1499 -3.6994 1.7559 25 7 0.6025 -4.6634 1.2692 26 14 -1.8407 -4.0924 2.4460 27 1 -2.4815 -2.8423 2.9275 28 1 -2.6798 -4.7017 1.3830 29 1 -1.7046 -5.0456 3.5765 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 3.1300 1.4427 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.9338 -1.1546 0.3181 38 1 3.9330 0.3033 1.3393 39 1 3.4283 -1.9363 2.9845 40 1 5.5226 -2.0355 4.6777 41 1 5.5229 -3.4931 3.6560 42 1 7.5444 -4.2953 2.7018 43 1 11.2245 -2.6277 3.6556 44 1 11.3465 -0.4646 4.9062 45 1 10.1818 1.3889 5.9765 46 1 7.7273 1.4768 6.0264 47 1 6.3918 -0.2891 5.0057 48 1 2.1080 -2.8135 0.8941 49 1 0.2796 -5.5781 1.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698967535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:57 Heat of formation + Delta-G solvation = -4.958074 kcal Electronic energy + Delta-G solvation = -29245.600244 eV Core-core repulsion = 25364.305996 eV Total energy + Delta-G solvation = -3881.294248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98903 -40.58722 -38.76782 -38.22884 -35.29167 -35.10061 -34.90942 -32.23798 -32.11869 -31.32528 -30.01209 -28.47984 -27.43064 -25.60816 -24.85372 -24.48345 -23.49737 -22.39622 -21.36737 -20.64714 -19.19398 -18.89825 -18.54482 -17.95853 -17.47599 -17.03414 -16.81155 -16.24166 -15.76184 -15.62750 -15.43483 -15.32845 -15.07248 -14.92816 -14.79473 -14.61299 -14.27939 -14.20465 -13.84975 -13.59022 -13.43935 -13.07085 -12.98071 -12.88638 -12.87221 -12.70788 -12.64840 -12.43075 -12.26651 -11.96589 -11.94632 -11.75860 -11.45202 -11.28984 -11.20533 -10.88532 -10.72070 -10.45864 -10.00641 -9.99164 -8.97899 -8.94537 -7.86719 -5.13759 -0.58585 -0.03813 0.95585 1.49496 1.52440 1.59589 1.64823 2.09223 2.35986 2.60420 3.13647 3.37712 3.46882 3.58418 3.76736 3.80455 3.85756 3.92124 3.95331 3.97985 4.11018 4.24297 4.30055 4.32057 4.35124 4.39300 4.46281 4.57746 4.64072 4.69396 4.78324 4.81909 4.92280 4.94838 4.98433 5.07131 5.11912 5.15238 5.16272 5.26263 5.33027 5.48741 5.52832 5.54209 5.62038 5.65371 5.68008 5.77075 5.95823 6.33383 6.61140 6.99259 7.26770 7.41573 8.12673 8.37871 9.36219 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.002659 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.641854 B =10526.190791 C =11533.661540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.124 3.876 7 N -0.710 5.710 8 C 0.514 3.486 9 O -0.582 6.582 10 C -0.095 4.095 11 C -0.104 4.104 12 C 0.064 3.936 13 N -0.513 5.513 14 C 0.138 3.862 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.123 4.123 18 C -0.096 4.096 19 C -0.131 4.131 20 C -0.031 4.031 21 N -0.727 5.727 22 C -0.211 4.211 23 H 0.080 0.920 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.957 3.043 27 H -0.266 1.266 28 H -0.304 1.304 29 H -0.298 1.298 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.195 0.805 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.150 0.850 47 H 0.130 0.870 48 H 0.372 0.628 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.604 12.626 10.108 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.001 4.001 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.462 6.462 10 C -0.135 4.135 11 C -0.106 4.106 12 C -0.079 4.079 13 N -0.221 5.221 14 C -0.033 4.033 15 C -0.133 4.133 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.115 4.115 19 C -0.149 4.149 20 C -0.036 4.036 21 N -0.367 5.367 22 C -0.343 4.343 23 H 0.098 0.902 24 C -0.264 4.264 25 N -0.619 5.619 26 Si 0.788 3.212 27 H -0.190 1.190 28 H -0.233 1.233 29 H -0.226 1.226 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.169 0.831 43 H 0.212 0.788 44 H 0.183 0.817 45 H 0.177 0.823 46 H 0.168 0.832 47 H 0.147 0.853 48 H 0.204 0.796 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.224 12.266 9.213 23.065 hybrid contribution -1.870 -0.694 0.284 2.015 sum 15.354 11.572 9.497 21.443 Atomic orbital electron populations 1.21727 0.95359 1.01759 1.00317 1.21634 0.96438 0.96283 0.98525 1.21847 1.00773 0.94981 1.02201 1.20665 0.90031 0.86067 0.96718 0.92296 1.21576 0.94538 0.95460 0.88511 1.45969 1.06731 1.52709 1.30673 1.20805 0.82055 0.80626 0.86385 1.90677 1.56252 1.50339 1.48951 1.20603 0.91459 1.03050 0.98398 1.20127 0.95451 0.95526 0.99542 1.22177 0.90142 0.98389 0.97159 1.67413 1.07562 1.28900 1.18175 1.23750 1.01299 0.87664 0.90589 1.19339 0.93244 0.98603 1.02142 1.21367 1.01413 0.92190 0.95616 1.21344 0.94389 0.99158 0.99169 1.21379 0.94832 0.98228 0.97018 1.21120 1.00637 0.94198 0.98955 1.18273 0.93497 0.94947 0.96882 1.42585 1.17436 1.03346 1.73305 1.19494 0.93352 0.92044 1.29421 0.90227 1.25338 1.01162 0.96270 1.03622 1.69807 1.38390 0.99744 1.53913 0.85310 0.81106 0.77825 0.76970 1.19015 1.23253 1.22595 0.93313 0.93145 0.93212 0.93422 0.92536 0.92176 0.92054 0.93856 0.90292 0.75136 0.85430 0.86122 0.83148 0.78827 0.81733 0.82339 0.83203 0.85253 0.79599 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.28 71.98 0.60 -3.94 16 2 C -0.11 -3.45 2.69 -10.79 -0.03 -3.48 16 3 C -0.14 -3.51 8.84 71.98 0.64 -2.88 16 4 C 0.17 6.03 2.18 44.99 0.10 6.13 16 5 H 0.06 2.01 8.08 -2.39 -0.02 2.00 16 6 C 0.12 4.04 4.73 86.38 0.41 4.44 16 7 N -0.71 -22.16 5.39 -463.07 -2.50 -24.65 16 8 C 0.51 16.25 7.82 87.66 0.69 16.93 16 9 O -0.58 -22.72 16.03 -3.04 -0.05 -22.76 16 10 C -0.10 -2.36 5.31 29.10 0.15 -2.20 16 11 C -0.10 -2.87 4.40 -19.75 -0.09 -2.96 16 12 C 0.06 1.86 10.72 84.11 0.90 2.76 16 13 N -0.51 -14.56 10.30 -195.54 -2.01 -16.57 16 14 C 0.14 3.09 11.05 85.30 0.94 4.03 16 15 C -0.13 -2.94 5.74 -21.31 -0.12 -3.06 16 16 C -0.09 -1.31 9.81 22.31 0.22 -1.09 16 17 C -0.12 -1.66 9.94 22.06 0.22 -1.45 16 18 C -0.10 -1.56 9.95 22.07 0.22 -1.34 16 19 C -0.13 -2.86 9.33 22.28 0.21 -2.65 16 20 C -0.03 -0.80 5.75 -21.29 -0.12 -0.92 16 21 N -0.73 -32.04 4.44 -322.95 -1.43 -33.48 16 22 C -0.21 -10.32 7.58 84.03 0.64 -9.68 16 23 H 0.08 3.75 7.42 -2.91 -0.02 3.73 16 24 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 25 N -0.97 -55.81 13.06 21.65 0.28 -55.52 16 26 Si 0.96 43.73 29.55 68.60 2.03 45.76 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 29 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 2.05 6.03 -2.39 -0.01 2.04 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.36 6.54 -2.39 -0.02 1.35 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.37 6.71 -2.38 -0.02 2.36 16 39 H 0.41 12.72 8.14 -92.71 -0.75 11.97 16 40 H 0.13 2.48 6.83 -2.39 -0.02 2.47 16 41 H 0.12 2.73 8.05 -2.39 -0.02 2.71 16 42 H 0.15 4.10 8.05 -2.91 -0.02 4.08 16 43 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 46 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.13 2.62 6.65 -2.91 -0.02 2.60 16 48 H 0.37 18.45 7.80 -92.70 -0.72 17.73 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -69.36 399.39 1.85 -67.51 By element: Atomic # 1 Polarization: 44.92 SS G_CDS: -0.50 Total: 44.41 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 6.03 Total: -4.70 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -5.66 Total: -130.22 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.36 1.85 -67.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698967535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.551 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds