Wall clock time and date at job start Wed Apr 1 2020 00:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46905 * 194.17945 * 3 2 1 5 5 C 1.34771 * 120.00157 * 82.54181 * 4 3 2 6 6 O 1.21516 * 120.00602 * 183.13706 * 5 4 3 7 7 C 1.48169 * 120.00106 * 3.13516 * 5 4 3 8 8 C 1.39307 * 119.72641 * 172.84250 * 7 5 4 9 9 C 1.38587 * 119.05966 * 179.70039 * 8 7 5 10 10 C 1.50705 * 120.75700 * 180.25260 * 9 8 7 11 11 C 1.52996 * 109.46736 * 90.00014 * 10 9 8 12 12 C 1.38627 * 118.49081 * 0.27761 * 9 8 7 13 13 C 1.38564 * 119.34927 * 359.97438 * 12 9 8 14 14 N 1.31522 * 120.90173 * 0.02562 * 13 12 9 15 15 C 1.46511 * 120.00052 * 262.53557 * 4 3 2 16 16 C 1.53040 * 109.45504 * 60.07315 * 15 4 3 17 17 C 1.53189 * 109.30984 * 178.61355 * 16 15 4 18 18 N 1.46924 * 108.77821 * 54.63328 * 17 16 15 19 19 C 1.36934 * 120.63132 * 126.40942 * 18 17 16 20 20 H 1.08000 * 120.00541 * 324.25224 * 19 18 17 21 21 C 1.38817 * 120.00047 * 144.25337 * 19 18 17 22 22 N 1.31616 * 119.99824 * 2.86321 * 21 19 18 23 23 Si 1.86802 * 120.00293 * 182.86061 * 21 19 18 24 24 H 1.48490 * 109.46948 * 89.99954 * 23 21 19 25 25 H 1.48494 * 109.47038 * 210.00127 * 23 21 19 26 26 H 1.48499 * 109.47025 * 330.00211 * 23 21 19 27 27 C 1.46925 * 118.73756 * 306.39339 * 18 17 16 28 28 C 1.53039 * 109.46019 * 300.00509 * 15 4 3 29 29 H 4.40636 * 5.51398 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47011 * 74.18037 * 3 2 1 31 31 H 1.08997 * 109.47263 * 314.18193 * 3 2 1 32 32 H 1.07997 * 120.46866 * 359.97213 * 8 7 5 33 33 H 1.09001 * 109.47236 * 210.00149 * 10 9 8 34 34 H 1.08998 * 109.46735 * 329.99978 * 10 9 8 35 35 H 1.08994 * 109.47558 * 299.99721 * 11 10 9 36 36 H 1.08998 * 109.47538 * 60.00456 * 11 10 9 37 37 H 1.09009 * 109.47103 * 180.02562 * 11 10 9 38 38 H 1.08003 * 120.32832 * 179.97438 * 12 9 8 39 39 H 1.07999 * 119.54768 * 179.97438 * 13 12 9 40 40 H 1.08999 * 109.45759 * 180.02562 * 15 4 3 41 41 H 1.08999 * 109.49841 * 298.56245 * 16 15 4 42 42 H 1.09001 * 109.50047 * 58.66153 * 16 15 4 43 43 H 1.09001 * 109.58720 * 294.84647 * 17 16 15 44 44 H 1.09003 * 109.70156 * 174.48917 * 17 16 15 45 45 H 0.97002 * 120.00439 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.58671 * 293.81923 * 27 18 17 47 47 H 1.09003 * 109.70441 * 173.46307 * 27 18 17 48 48 H 1.08997 * 109.49421 * 301.33170 * 28 15 4 49 49 H 1.08998 * 109.49719 * 61.39954 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3400 0.3383 5 6 3.2153 1.7215 1.6283 6 8 3.5654 2.8513 1.9069 7 6 2.8780 0.7633 2.7071 8 6 3.1061 1.1116 4.0365 9 6 2.7797 0.2073 5.0347 10 6 3.0050 0.5466 6.4857 11 6 1.7545 1.2227 7.0513 12 6 2.2418 -1.0166 4.6682 13 6 2.0470 -1.2982 3.3255 14 7 2.3657 -0.4214 2.3984 15 6 3.5328 2.2647 -0.7257 16 6 2.3389 2.5288 -1.6460 17 6 2.7502 3.5226 -2.7367 18 7 3.9397 3.0036 -3.4254 19 6 3.9539 2.8690 -4.7880 20 1 3.0559 2.5748 -5.3110 21 6 5.1225 3.1106 -5.4972 22 7 6.2308 3.4140 -4.8556 23 14 5.1220 3.0050 -7.3623 24 1 4.7943 4.3360 -7.9332 25 1 6.4645 2.5808 -7.8344 26 1 4.1068 2.0143 -7.8017 27 6 5.1139 2.6321 -2.6242 28 6 4.6762 1.6481 -1.5347 29 1 -1.0502 -0.0005 0.0001 30 1 3.0094 -0.2793 -0.9888 31 1 3.0097 -0.7154 0.7369 32 1 3.5271 2.0743 4.2859 33 1 3.2088 -0.3665 7.0449 34 1 3.8549 1.2234 6.5728 35 1 1.5506 2.1358 6.4922 36 1 0.9045 0.5459 6.9642 37 1 1.9175 1.4685 8.1007 38 1 1.9771 -1.7437 5.4217 39 1 1.6286 -2.2509 3.0363 40 1 3.8656 3.2042 -0.2843 41 1 2.0211 1.5936 -2.1070 42 1 1.5167 2.9462 -1.0647 43 1 2.9816 4.4868 -2.2841 44 1 1.9362 3.6407 -3.4521 45 1 7.0474 3.5833 -5.3511 46 1 5.5381 3.5236 -2.1624 47 1 5.8608 2.1610 -3.2633 48 1 5.5176 1.4388 -0.8741 49 1 4.3365 0.7209 -1.9962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699782462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:42 Heat of formation + Delta-G solvation = 91.533348 kcal Electronic energy + Delta-G solvation = -29899.131674 eV Core-core repulsion = 26022.021608 eV Total energy + Delta-G solvation = -3877.110066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.02423 -39.40568 -37.35991 -35.84543 -35.08921 -32.99424 -32.07898 -31.53710 -30.73544 -30.00911 -29.45897 -26.99529 -25.63823 -24.86939 -24.06546 -22.53204 -22.09550 -21.57834 -19.76875 -19.16850 -18.05773 -17.33583 -16.89114 -16.68669 -16.19707 -15.86438 -15.41333 -15.14859 -14.76040 -14.37432 -14.13443 -13.93679 -13.89864 -13.62780 -13.55255 -13.25808 -13.14743 -12.95967 -12.71049 -12.48178 -12.29586 -12.24542 -11.79408 -11.48630 -11.41532 -11.04313 -10.87742 -10.77107 -10.43097 -10.29460 -10.10027 -10.06242 -10.04206 -10.01543 -9.81475 -9.73205 -9.62917 -9.43001 -9.12285 -8.50876 -8.34596 -6.52280 -5.76525 -3.29392 0.47019 0.91975 2.62946 2.75891 3.15155 3.37332 3.39557 3.45537 3.46447 3.68774 4.04164 4.22761 4.36706 4.50058 4.65652 4.69011 4.75164 4.82727 4.89407 5.00115 5.18097 5.36101 5.40922 5.41300 5.45799 5.52731 5.54623 5.58800 5.64286 5.66797 5.77682 5.91668 5.94312 6.01242 6.14470 6.17909 6.29168 6.37832 6.43909 6.58993 6.62978 6.70481 6.84624 6.94584 7.03429 7.42969 7.46881 7.59850 7.80762 7.82184 7.88398 8.23101 8.55281 9.27114 9.85727 10.46422 11.30335 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.002534 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.254470 B =11045.567809 C =11517.752624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.159 4.159 3 C 0.206 3.794 4 N -0.580 5.580 5 C 0.566 3.434 6 O -0.534 6.534 7 C 0.088 3.912 8 C -0.111 4.111 9 C -0.046 4.046 10 C -0.086 4.086 11 C -0.148 4.148 12 C -0.154 4.154 13 C 0.096 3.904 14 N -0.449 5.449 15 C 0.142 3.858 16 C -0.134 4.134 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.172 3.828 28 C -0.147 4.147 29 H 0.209 0.791 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.255 0.745 46 H 0.018 0.982 47 H 0.101 0.899 48 H 0.051 0.949 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -11.058 22.354 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.160 4.160 3 C 0.084 3.916 4 N -0.309 5.309 5 C 0.353 3.647 6 O -0.410 6.410 7 C -0.049 4.049 8 C -0.132 4.132 9 C -0.054 4.054 10 C -0.124 4.124 11 C -0.206 4.206 12 C -0.174 4.174 13 C -0.062 4.062 14 N -0.161 5.161 15 C 0.041 3.959 16 C -0.175 4.175 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.045 3.955 28 C -0.187 4.187 29 H 0.226 0.774 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.178 0.822 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.036 0.964 47 H 0.119 0.881 48 H 0.070 0.930 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.336 -10.571 21.496 25.364 hybrid contribution -0.223 0.022 -0.090 0.242 sum -8.560 -10.549 21.406 25.353 Atomic orbital electron populations 1.24676 0.95702 1.00335 1.03425 1.23332 0.94535 0.99997 0.98123 1.19000 0.84087 0.85061 1.03426 1.48157 1.61822 1.15465 1.05475 1.17966 0.78002 0.86316 0.82436 1.90776 1.48107 1.19476 1.82661 1.21280 0.98197 0.92348 0.93116 1.21994 0.98678 1.00760 0.91764 1.20338 0.95399 0.93391 0.96251 1.20597 0.99495 1.01883 0.90391 1.21753 0.96927 1.00937 1.00940 1.22221 0.99878 0.97284 0.97973 1.22914 0.95842 0.98654 0.88838 1.68113 1.09702 1.01755 1.36563 1.21356 0.95588 0.92879 0.86078 1.22342 0.96220 1.01324 0.97565 1.20894 0.90981 0.93271 0.92724 1.44015 1.11452 1.73298 1.02869 1.19141 0.96961 1.40153 0.82004 0.91919 1.25337 0.96774 0.98898 0.98004 1.69890 0.99814 1.51104 1.34033 0.86278 0.76886 0.77835 0.85688 1.21305 1.21680 1.20454 1.20912 0.90443 0.93934 0.90163 1.22643 0.96179 1.01174 0.98717 0.77397 0.88633 0.85014 0.83612 0.90347 0.90198 0.92212 0.92445 0.91880 0.84566 0.82167 0.88528 0.92028 0.93165 0.96258 0.92518 0.93493 0.96374 0.88066 0.93000 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.93 19.25 29.55 0.57 -2.37 16 2 C -0.16 -2.29 11.30 -37.12 -0.42 -2.71 16 3 C 0.21 2.95 4.75 -6.83 -0.03 2.92 16 4 N -0.58 -9.59 2.36 -170.36 -0.40 -10.00 16 5 C 0.57 9.55 7.57 -12.18 -0.09 9.46 16 6 O -0.53 -10.43 15.68 5.35 0.08 -10.35 16 7 C 0.09 1.20 6.61 -83.01 -0.55 0.65 16 8 C -0.11 -1.28 9.34 -39.06 -0.36 -1.64 16 9 C -0.05 -0.39 5.17 -104.35 -0.54 -0.93 16 10 C -0.09 -0.52 6.11 -27.88 -0.17 -0.69 16 11 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 12 C -0.15 -1.14 9.82 -39.32 -0.39 -1.53 16 13 C 0.10 0.84 11.18 -17.56 -0.20 0.65 16 14 N -0.45 -5.35 4.96 -9.80 -0.05 -5.40 16 15 C 0.14 2.68 2.47 -67.88 -0.17 2.51 16 16 C -0.13 -2.56 4.93 -26.61 -0.13 -2.69 16 17 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 18 N -0.59 -15.07 2.99 -172.32 -0.52 -15.59 16 19 C -0.25 -6.95 9.55 -15.06 -0.14 -7.10 16 20 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 21 C 0.01 0.24 5.30 -17.43 -0.09 0.14 16 22 N -0.90 -26.14 10.69 55.49 0.59 -25.54 16 23 Si 0.90 21.70 29.56 -169.99 -5.02 16.67 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.17 4.17 5.24 -3.71 -0.02 4.15 16 28 C -0.15 -2.90 5.33 -26.61 -0.14 -3.04 16 29 H 0.21 2.06 7.80 -54.08 -0.42 1.64 16 30 H 0.10 1.38 6.47 -51.93 -0.34 1.05 16 31 H 0.13 1.72 5.27 -52.08 -0.27 1.44 16 32 H 0.15 1.68 7.66 -52.49 -0.40 1.28 16 33 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 34 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 38 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.10 2.02 6.90 -51.93 -0.36 1.66 16 41 H 0.06 1.19 7.38 -51.93 -0.38 0.80 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.10 2.73 6.00 -51.93 -0.31 2.42 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.06 1.13 6.73 -51.93 -0.35 0.78 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -32.16 395.50 -9.33 -41.49 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.44 Total: 2.23 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.53 Total: 0.52 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.37 Total: -56.53 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.16 -9.33 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699782462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.023 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds