Wall clock time and date at job start Wed Apr 1 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46905 * 194.17945 * 3 2 1 5 5 C 1.34771 * 120.00157 * 82.54181 * 4 3 2 6 6 O 1.21516 * 120.00602 * 183.13706 * 5 4 3 7 7 C 1.48169 * 120.00106 * 3.13516 * 5 4 3 8 8 C 1.39307 * 119.72641 * 172.84250 * 7 5 4 9 9 C 1.38587 * 119.05966 * 179.70039 * 8 7 5 10 10 C 1.50705 * 120.75700 * 180.25260 * 9 8 7 11 11 C 1.52996 * 109.46736 * 90.00014 * 10 9 8 12 12 C 1.38627 * 118.49081 * 0.27761 * 9 8 7 13 13 C 1.38564 * 119.34927 * 359.97438 * 12 9 8 14 14 N 1.31522 * 120.90173 * 0.02562 * 13 12 9 15 15 C 1.46511 * 120.00052 * 262.53557 * 4 3 2 16 16 C 1.53040 * 109.45504 * 60.07315 * 15 4 3 17 17 C 1.53189 * 109.30984 * 178.61355 * 16 15 4 18 18 N 1.46924 * 108.77821 * 54.63328 * 17 16 15 19 19 C 1.36934 * 120.63132 * 126.40942 * 18 17 16 20 20 H 1.08000 * 120.00541 * 324.25224 * 19 18 17 21 21 C 1.38817 * 120.00047 * 144.25337 * 19 18 17 22 22 N 1.31616 * 119.99824 * 2.86321 * 21 19 18 23 23 Si 1.86802 * 120.00293 * 182.86061 * 21 19 18 24 24 H 1.48490 * 109.46948 * 89.99954 * 23 21 19 25 25 H 1.48494 * 109.47038 * 210.00127 * 23 21 19 26 26 H 1.48499 * 109.47025 * 330.00211 * 23 21 19 27 27 C 1.46925 * 118.73756 * 306.39339 * 18 17 16 28 28 C 1.53039 * 109.46019 * 300.00509 * 15 4 3 29 29 H 4.40636 * 5.51398 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47011 * 74.18037 * 3 2 1 31 31 H 1.08997 * 109.47263 * 314.18193 * 3 2 1 32 32 H 1.07997 * 120.46866 * 359.97213 * 8 7 5 33 33 H 1.09001 * 109.47236 * 210.00149 * 10 9 8 34 34 H 1.08998 * 109.46735 * 329.99978 * 10 9 8 35 35 H 1.08994 * 109.47558 * 299.99721 * 11 10 9 36 36 H 1.08998 * 109.47538 * 60.00456 * 11 10 9 37 37 H 1.09009 * 109.47103 * 180.02562 * 11 10 9 38 38 H 1.08003 * 120.32832 * 179.97438 * 12 9 8 39 39 H 1.07999 * 119.54768 * 179.97438 * 13 12 9 40 40 H 1.08999 * 109.45759 * 180.02562 * 15 4 3 41 41 H 1.08999 * 109.49841 * 298.56245 * 16 15 4 42 42 H 1.09001 * 109.50047 * 58.66153 * 16 15 4 43 43 H 1.09001 * 109.58720 * 294.84647 * 17 16 15 44 44 H 1.09003 * 109.70156 * 174.48917 * 17 16 15 45 45 H 0.97002 * 120.00439 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.58671 * 293.81923 * 27 18 17 47 47 H 1.09003 * 109.70441 * 173.46307 * 27 18 17 48 48 H 1.08997 * 109.49421 * 301.33170 * 28 15 4 49 49 H 1.08998 * 109.49719 * 61.39954 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3400 0.3383 5 6 3.2153 1.7215 1.6283 6 8 3.5654 2.8513 1.9069 7 6 2.8780 0.7633 2.7071 8 6 3.1061 1.1116 4.0365 9 6 2.7797 0.2073 5.0347 10 6 3.0050 0.5466 6.4857 11 6 1.7545 1.2227 7.0513 12 6 2.2418 -1.0166 4.6682 13 6 2.0470 -1.2982 3.3255 14 7 2.3657 -0.4214 2.3984 15 6 3.5328 2.2647 -0.7257 16 6 2.3389 2.5288 -1.6460 17 6 2.7502 3.5226 -2.7367 18 7 3.9397 3.0036 -3.4254 19 6 3.9539 2.8690 -4.7880 20 1 3.0559 2.5748 -5.3110 21 6 5.1225 3.1106 -5.4972 22 7 6.2308 3.4140 -4.8556 23 14 5.1220 3.0050 -7.3623 24 1 4.7943 4.3360 -7.9332 25 1 6.4645 2.5808 -7.8344 26 1 4.1068 2.0143 -7.8017 27 6 5.1139 2.6321 -2.6242 28 6 4.6762 1.6481 -1.5347 29 1 -1.0502 -0.0005 0.0001 30 1 3.0094 -0.2793 -0.9888 31 1 3.0097 -0.7154 0.7369 32 1 3.5271 2.0743 4.2859 33 1 3.2088 -0.3665 7.0449 34 1 3.8549 1.2234 6.5728 35 1 1.5506 2.1358 6.4922 36 1 0.9045 0.5459 6.9642 37 1 1.9175 1.4685 8.1007 38 1 1.9771 -1.7437 5.4217 39 1 1.6286 -2.2509 3.0363 40 1 3.8656 3.2042 -0.2843 41 1 2.0211 1.5936 -2.1070 42 1 1.5167 2.9462 -1.0647 43 1 2.9816 4.4868 -2.2841 44 1 1.9362 3.6407 -3.4521 45 1 7.0474 3.5833 -5.3511 46 1 5.5381 3.5236 -2.1624 47 1 5.8608 2.1610 -3.2633 48 1 5.5176 1.4388 -0.8741 49 1 4.3365 0.7209 -1.9962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699782462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:41 Heat of formation + Delta-G solvation = 75.155821 kcal Electronic energy + Delta-G solvation = -29899.841857 eV Core-core repulsion = 26022.021608 eV Total energy + Delta-G solvation = -3877.820249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.02097 -40.56169 -38.96782 -37.15826 -35.94493 -34.60728 -33.42239 -32.56837 -31.76359 -31.46106 -31.07916 -28.18316 -27.27237 -25.73939 -25.17122 -23.87957 -23.63698 -22.78458 -20.93220 -20.82449 -19.25385 -18.59350 -18.37235 -17.84504 -17.12187 -16.98283 -16.77207 -16.50169 -16.00249 -15.58872 -15.36201 -15.10609 -14.98593 -14.88840 -14.75340 -14.56406 -14.43882 -14.24124 -14.14944 -13.93713 -13.32079 -13.24578 -12.96927 -12.84485 -12.78414 -12.62264 -12.31482 -12.17717 -12.01912 -11.94230 -11.87805 -11.61205 -11.43369 -11.39855 -11.20020 -11.04585 -10.56977 -10.54282 -10.27232 -10.10992 -9.77400 -8.59171 -7.87323 -5.44425 -0.38192 0.20621 1.46563 1.47868 1.49847 1.58130 1.63785 2.10500 2.29069 2.49877 2.80852 3.11392 3.29477 3.53290 3.64718 3.66724 3.71507 3.82967 3.99260 4.02877 4.05079 4.21173 4.26199 4.30610 4.43631 4.44092 4.45900 4.60934 4.61268 4.74817 4.77518 4.81980 4.89175 4.95170 4.99909 5.00881 5.02916 5.08695 5.11586 5.21006 5.26674 5.34505 5.37318 5.46270 5.52126 5.64096 5.69431 5.75928 6.24009 6.44795 6.69507 6.84948 7.00047 7.16404 7.81502 8.38383 9.17854 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.002534 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.254470 B =11045.567809 C =11517.752624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.210 3.790 4 N -0.580 5.580 5 C 0.560 3.440 6 O -0.575 6.575 7 C 0.061 3.939 8 C -0.121 4.121 9 C -0.045 4.045 10 C -0.084 4.084 11 C -0.147 4.147 12 C -0.133 4.133 13 C 0.093 3.907 14 N -0.463 5.463 15 C 0.152 3.848 16 C -0.115 4.115 17 C 0.147 3.853 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.045 4.045 22 N -0.935 5.935 23 Si 0.972 3.028 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.180 3.820 28 C -0.129 4.129 29 H 0.238 0.762 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.178 0.822 39 H 0.194 0.806 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.010 0.990 44 H 0.062 0.938 45 H 0.251 0.749 46 H -0.009 1.009 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 -13.926 24.071 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.193 4.193 3 C 0.089 3.911 4 N -0.308 5.308 5 C 0.349 3.651 6 O -0.454 6.454 7 C -0.075 4.075 8 C -0.142 4.142 9 C -0.053 4.053 10 C -0.121 4.121 11 C -0.204 4.204 12 C -0.152 4.152 13 C -0.066 4.066 14 N -0.176 5.176 15 C 0.049 3.951 16 C -0.155 4.155 17 C 0.020 3.980 18 N -0.333 5.333 19 C -0.395 4.395 20 H 0.084 0.916 21 C -0.240 4.240 22 N -0.580 5.580 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.192 1.192 27 C 0.054 3.946 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.109 0.891 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.195 0.805 39 H 0.210 0.790 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.009 0.991 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.498 -13.460 23.226 28.824 hybrid contribution 0.364 0.864 -0.488 1.057 sum -10.134 -12.596 22.737 27.899 Atomic orbital electron populations 1.25429 0.96501 0.98651 1.01981 1.23431 0.94873 1.01504 0.99493 1.19088 0.84639 0.83846 1.03537 1.48076 1.61927 1.15906 1.04939 1.18561 0.76977 0.86517 0.83033 1.90737 1.49974 1.21406 1.83310 1.20773 1.01308 0.92999 0.92394 1.22014 0.99238 1.01116 0.91877 1.20650 0.94597 0.93220 0.96823 1.20672 0.99519 1.03079 0.88873 1.21750 0.96984 1.00232 1.01478 1.22673 0.97128 0.97039 0.98372 1.23530 0.94969 0.98963 0.89110 1.67949 1.10151 1.01465 1.38004 1.20964 0.95111 0.92489 0.86528 1.22093 0.96332 1.00472 0.96557 1.20980 0.89953 0.93591 0.93427 1.44234 1.12379 1.73920 1.02784 1.19459 0.97103 1.39861 0.83095 0.91563 1.26107 0.96448 0.99033 1.02431 1.70084 1.00193 1.52238 1.35478 0.85212 0.76841 0.77819 0.80205 1.21263 1.21849 1.19160 1.20640 0.89889 0.93517 0.90567 1.22359 0.96964 1.00022 0.97546 0.74546 0.89111 0.83602 0.84954 0.87789 0.90469 0.94049 0.91812 0.90483 0.80497 0.78965 0.91070 0.91708 0.92220 0.97197 0.91913 0.93913 0.99138 0.90867 0.92093 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.94 19.25 74.32 1.43 -3.51 16 2 C -0.19 -5.24 11.30 31.12 0.35 -4.89 16 3 C 0.21 5.89 4.75 84.57 0.40 6.29 16 4 N -0.58 -19.53 2.36 -811.18 -1.91 -21.44 16 5 C 0.56 19.56 7.57 86.88 0.66 20.22 16 6 O -0.57 -23.85 15.68 -3.76 -0.06 -23.91 16 7 C 0.06 1.66 6.61 41.91 0.28 1.94 16 8 C -0.12 -2.77 9.34 22.61 0.21 -2.56 16 9 C -0.05 -0.66 5.17 -19.69 -0.10 -0.77 16 10 C -0.08 -0.79 6.11 29.85 0.18 -0.61 16 11 C -0.15 -1.35 9.89 71.98 0.71 -0.64 16 12 C -0.13 -1.42 9.82 22.44 0.22 -1.20 16 13 C 0.09 1.30 11.18 84.82 0.95 2.25 16 14 N -0.46 -10.25 4.96 -184.91 -0.92 -11.17 16 15 C 0.15 5.90 2.47 45.02 0.11 6.01 16 16 C -0.11 -4.40 4.93 30.67 0.15 -4.25 16 17 C 0.15 6.57 6.52 86.36 0.56 7.13 16 18 N -0.61 -31.87 2.99 -699.10 -2.09 -33.96 16 19 C -0.27 -14.80 9.55 84.04 0.80 -14.00 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.04 -2.52 5.30 84.86 0.45 -2.07 16 22 N -0.93 -55.81 10.69 21.65 0.23 -55.58 16 23 Si 0.97 45.13 29.56 68.60 2.03 47.16 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C 0.18 9.17 5.24 86.36 0.45 9.62 16 28 C -0.13 -5.26 5.33 30.67 0.16 -5.09 16 29 H 0.24 3.86 7.80 -4.41 -0.03 3.82 16 30 H 0.09 2.58 6.47 -2.38 -0.02 2.56 16 31 H 0.15 3.66 5.27 -2.69 -0.01 3.65 16 32 H 0.13 3.27 7.66 -2.91 -0.02 3.24 16 33 H 0.10 0.49 8.10 -2.39 -0.02 0.47 16 34 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 35 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.07 3.16 6.90 -2.39 -0.02 3.14 16 41 H 0.06 2.46 7.38 -2.39 -0.02 2.44 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 2.69 7.93 -2.39 -0.02 2.67 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.07 4.14 6.00 -2.39 -0.01 4.13 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.07 2.60 6.73 -2.39 -0.02 2.58 16 Total: -1.00 -73.09 395.50 6.20 -66.90 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.94 Total: 18.11 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.99 Total: 13.90 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -4.69 Total: -122.15 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.09 6.20 -66.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699782462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.054 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds