Wall clock time and date at job start Wed Apr 1 2020 00:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35741 * 120.33569 * 2 1 4 4 C 1.40826 * 119.72391 * 179.97438 * 3 2 1 5 5 C 1.34545 * 120.57920 * 0.04254 * 4 3 2 6 6 N 1.37438 * 120.74493 * 359.97438 * 5 4 3 7 7 C 1.35122 * 131.28490 * 179.97438 * 6 5 4 8 8 C 1.38053 * 108.77236 * 180.02562 * 7 6 5 9 9 C 1.47501 * 126.37441 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00333 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99961 * 0.02811 * 9 8 7 12 12 C 1.47021 * 125.64683 * 359.68746 * 11 9 8 13 13 C 1.54340 * 107.26572 * 178.85514 * 12 11 9 14 14 C 1.55157 * 103.01818 * 338.13767 * 13 12 11 15 15 H 1.09005 * 111.04004 * 277.22283 * 14 13 12 16 16 C 1.53000 * 111.00389 * 153.38350 * 14 13 12 17 17 C 1.52994 * 109.47419 * 181.35251 * 16 14 13 18 18 N 1.46502 * 109.47405 * 179.97438 * 17 16 14 19 19 C 1.36933 * 119.99808 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00392 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99716 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00142 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46900 * 90.00071 * 23 21 19 25 25 H 1.48502 * 109.46954 * 209.99746 * 23 21 19 26 26 H 1.48495 * 109.46969 * 329.99767 * 23 21 19 27 27 C 1.47427 * 125.65139 * 180.02562 * 11 9 8 28 28 C 1.41197 * 107.25640 * 359.97438 * 8 7 6 29 29 C 1.37950 * 119.80875 * 0.02562 * 6 5 4 30 30 H 1.08993 * 109.47212 * 269.95786 * 1 2 3 31 31 H 1.09004 * 109.46875 * 29.96069 * 1 2 3 32 32 H 1.08999 * 109.47163 * 149.95921 * 1 2 3 33 33 H 1.07996 * 120.13783 * 0.03175 * 3 2 1 34 34 H 1.07998 * 119.71081 * 180.31711 * 4 3 2 35 35 H 1.07996 * 119.62455 * 179.97438 * 5 4 3 36 36 H 1.08009 * 125.61414 * 0.02562 * 7 6 5 37 37 H 1.08999 * 109.88662 * 298.39277 * 12 11 9 38 38 H 1.08996 * 109.88746 * 59.56532 * 12 11 9 39 39 H 1.09002 * 110.84703 * 219.67620 * 13 12 11 40 40 H 1.08993 * 110.67100 * 96.52469 * 13 12 11 41 41 H 1.09003 * 109.47130 * 301.35153 * 16 14 13 42 42 H 1.09001 * 109.47240 * 61.34857 * 16 14 13 43 43 H 1.09002 * 109.47368 * 300.00280 * 17 16 14 44 44 H 1.09001 * 109.47236 * 59.99603 * 17 16 14 45 45 H 0.96995 * 119.99899 * 359.97438 * 18 17 16 46 46 H 0.97006 * 119.99724 * 180.02562 * 22 21 19 47 47 H 1.09005 * 110.35914 * 322.92459 * 27 11 9 48 48 H 1.08995 * 110.36940 * 85.24888 * 27 11 9 49 49 H 1.08001 * 126.56848 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1716 0.0000 4 6 3.6008 1.1565 0.0005 5 6 4.2728 -0.0091 0.0002 6 7 3.6005 -1.2078 -0.0001 7 6 4.0499 -2.4820 -0.0010 8 6 2.9650 -3.3358 -0.0016 9 6 3.0120 -4.8100 -0.0031 10 8 1.9789 -5.4513 -0.0040 11 7 4.2001 -5.4464 -0.0034 12 6 5.5194 -4.7978 -0.0090 13 6 6.5807 -5.9179 0.0223 14 6 5.7988 -7.1240 0.6064 15 1 5.7631 -7.0772 1.6949 16 6 6.4032 -8.4488 0.1370 17 6 5.5870 -9.6116 0.7048 18 7 6.1654 -10.8801 0.2547 19 6 5.5988 -12.0657 0.6397 20 1 4.7251 -12.0658 1.2747 21 6 6.1472 -13.2677 0.2137 22 7 7.2115 -13.2677 -0.5606 23 14 5.3746 -14.8852 0.7394 24 1 4.3464 -15.2883 -0.2534 25 1 6.4243 -15.9327 0.8179 26 1 4.7390 -14.7204 2.0713 27 6 4.3919 -6.9081 -0.0054 28 6 1.8020 -2.5351 -0.0005 29 6 2.2210 -1.2203 -0.0007 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3633 0.8904 -0.5132 32 1 -0.3633 -0.8896 -0.5145 33 1 1.6603 2.1113 0.0005 34 1 4.1460 2.0887 0.0057 35 1 5.3528 -0.0026 0.0002 36 1 5.0872 -2.7831 -0.0011 37 1 5.6350 -4.2002 -0.9132 38 1 5.6252 -4.1649 0.8721 39 1 7.4125 -5.6463 0.6723 40 1 6.9360 -6.1395 -0.9840 41 1 6.3858 -8.4904 -0.9521 42 1 7.4329 -8.5227 0.4869 43 1 5.6043 -9.5700 1.7939 44 1 4.5573 -9.5377 0.3548 45 1 6.9493 -10.8800 -0.3165 46 1 7.5945 -14.1076 -0.8586 47 1 3.6325 -7.3911 0.6096 48 1 4.3578 -7.2938 -1.0243 49 1 0.7801 -2.8847 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700085769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:35 Heat of formation + Delta-G solvation = 30.478206 kcal Electronic energy + Delta-G solvation = -28337.103992 eV Core-core repulsion = 24457.346376 eV Total energy + Delta-G solvation = -3879.757616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.28190 -41.03151 -38.87867 -37.58993 -36.85442 -35.04805 -34.58704 -32.78611 -31.39378 -30.79808 -29.79521 -28.28604 -27.81068 -26.28760 -24.97514 -23.78286 -23.11266 -22.62206 -22.00729 -21.20608 -20.33539 -19.15482 -18.40240 -18.22489 -17.37789 -16.78570 -16.76604 -16.58457 -16.42330 -15.99226 -15.60151 -15.36799 -15.21115 -15.03740 -14.93058 -14.50393 -14.28902 -14.16382 -14.10482 -13.72746 -13.68750 -13.38403 -13.18872 -12.99124 -12.82682 -12.77522 -12.59389 -12.36196 -12.29210 -12.15790 -12.06862 -11.97632 -11.68762 -11.54864 -11.39828 -11.17240 -11.12492 -10.93666 -9.81553 -9.52893 -9.01040 -8.32658 -7.97037 -5.25717 -0.21780 0.35261 1.03132 1.45693 1.47830 1.56280 1.63340 1.99616 2.40153 2.53484 2.54769 3.35453 3.36606 3.50404 3.60115 3.72733 3.80665 3.87653 3.96165 4.08075 4.11740 4.16474 4.25803 4.34938 4.36971 4.45899 4.50493 4.54033 4.60730 4.73877 4.76110 4.76738 4.82016 4.82250 4.88851 4.91774 4.96687 5.12360 5.14530 5.17055 5.24129 5.28195 5.35840 5.41272 5.46345 5.47128 5.49119 5.62439 5.87278 6.26229 6.29222 6.47222 7.09936 7.32228 8.08477 8.32514 9.26331 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.001753 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.772355 B =15970.667413 C =16819.559299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 C -0.130 4.130 4 C -0.127 4.127 5 C 0.020 3.980 6 N -0.340 5.340 7 C -0.008 4.008 8 C -0.193 4.193 9 C 0.591 3.409 10 O -0.595 6.595 11 N -0.612 5.612 12 C 0.088 3.912 13 C -0.118 4.118 14 C -0.084 4.084 15 H 0.090 0.910 16 C -0.099 4.099 17 C 0.147 3.853 18 N -0.747 5.747 19 C -0.251 4.251 20 H 0.071 0.929 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.271 1.271 27 C 0.109 3.891 28 C -0.172 4.172 29 C 0.024 3.976 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.160 0.840 34 H 0.183 0.817 35 H 0.199 0.801 36 H 0.220 0.780 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.018 0.982 44 H 0.011 0.989 45 H 0.376 0.624 46 H 0.252 0.748 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 39.635 1.126 39.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.096 4.096 6 N -0.003 5.003 7 C -0.141 4.141 8 C -0.201 4.201 9 C 0.383 3.617 10 O -0.478 6.478 11 N -0.344 5.344 12 C -0.034 4.034 13 C -0.155 4.155 14 C -0.104 4.104 15 H 0.108 0.892 16 C -0.137 4.137 17 C 0.020 3.980 18 N -0.389 5.389 19 C -0.382 4.382 20 H 0.089 0.911 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.196 1.196 27 C -0.014 4.014 28 C -0.196 4.196 29 C -0.081 4.081 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.177 0.823 34 H 0.201 0.799 35 H 0.216 0.784 36 H 0.236 0.764 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.208 0.792 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.255 39.419 1.227 39.572 hybrid contribution -0.544 -1.796 -0.086 1.878 sum -3.799 37.623 1.141 37.832 Atomic orbital electron populations 1.20763 0.88769 1.03842 1.03334 1.19671 0.97488 0.89974 0.99973 1.21300 0.94611 0.98161 1.00987 1.21257 0.94571 0.98369 1.00381 1.22431 1.00266 0.82083 1.04838 1.41582 1.06879 1.06339 1.45468 1.23217 1.00510 0.80099 1.10308 1.19436 0.94990 0.91145 1.14522 1.17541 0.81888 0.86838 0.75461 1.90746 1.34548 1.68833 1.53641 1.48395 1.06206 1.07628 1.72205 1.22688 0.80434 0.96809 1.03422 1.22769 0.97323 0.92038 1.03396 1.22210 0.92657 0.94751 1.00788 0.89185 1.21517 0.99596 0.91931 1.00652 1.20873 0.95388 0.85393 0.96309 1.42573 1.34691 1.01276 1.60400 1.19636 1.08635 0.85681 1.24286 0.91143 1.25568 0.98974 1.01056 1.01070 1.69807 1.25036 1.26154 1.40767 0.85142 0.77137 0.79458 0.78042 1.21478 1.21657 1.19634 1.22311 0.98167 0.80241 1.00672 1.21056 0.98368 0.90204 1.09963 1.18850 0.82966 0.94883 1.11432 0.90119 0.88823 0.92106 0.82268 0.79943 0.78399 0.76382 0.88770 0.88613 0.86811 0.89519 0.91811 0.90422 0.96432 0.97133 0.79244 0.93885 0.92821 0.92046 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.91 71.24 0.71 -0.53 16 2 C -0.07 -1.03 5.91 -19.67 -0.12 -1.15 16 3 C -0.13 -1.17 9.72 22.32 0.22 -0.95 16 4 C -0.13 -0.75 9.97 22.06 0.22 -0.53 16 5 C 0.02 0.17 10.89 82.97 0.90 1.07 16 6 N -0.34 -5.43 2.92 -345.06 -1.01 -6.44 16 7 C -0.01 -0.14 10.09 84.14 0.85 0.71 16 8 C -0.19 -4.98 6.10 -20.15 -0.12 -5.10 16 9 C 0.59 18.76 7.85 86.69 0.68 19.44 16 10 O -0.60 -24.70 17.17 -4.02 -0.07 -24.77 16 11 N -0.61 -15.72 3.33 -815.52 -2.71 -18.44 16 12 C 0.09 1.26 4.99 86.73 0.43 1.70 16 13 C -0.12 -1.70 6.42 31.79 0.20 -1.50 16 14 C -0.08 -1.96 3.08 -9.40 -0.03 -1.99 16 15 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 16 C -0.10 -2.97 4.84 30.59 0.15 -2.82 16 17 C 0.15 6.07 6.11 86.38 0.53 6.60 16 18 N -0.75 -39.46 5.60 -343.45 -1.92 -41.38 16 19 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 20 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 22 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 23 Si 0.97 47.62 29.55 68.60 2.03 49.64 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 27 C 0.11 3.14 5.56 86.86 0.48 3.62 16 28 C -0.17 -4.45 10.27 22.94 0.24 -4.21 16 29 C 0.02 0.49 6.60 38.90 0.26 0.75 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.61 8.09 -2.38 -0.02 0.59 16 32 H 0.06 0.83 7.70 -2.39 -0.02 0.81 16 33 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 36 H 0.22 1.97 4.34 -2.91 -0.01 1.96 16 37 H 0.09 0.98 7.03 -2.39 -0.02 0.96 16 38 H 0.10 0.96 6.82 -2.39 -0.02 0.94 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 41 H 0.06 1.95 8.10 -2.39 -0.02 1.94 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.01 0.46 7.46 -2.39 -0.02 0.45 16 45 H 0.38 20.63 7.67 -92.71 -0.71 19.92 16 46 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 47 H 0.05 1.84 7.96 -2.38 -0.02 1.82 16 48 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 49 H 0.14 3.75 7.94 -2.91 -0.02 3.72 16 Total: -1.00 -84.65 396.90 3.75 -80.90 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.25 Total: 23.10 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.90 Total: -2.66 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.36 Total: -126.21 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.07 Total: -24.77 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -84.65 3.75 -80.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700085769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.377 kcal (2) G-P(sol) polarization free energy of solvation -84.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds