Wall clock time and date at job start Wed Apr 1 2020 01:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21544 * 120.00154 * 359.97438 * 9 8 7 11 11 C 1.47891 * 119.99670 * 179.97438 * 9 8 7 12 12 C 1.40592 * 119.73424 * 0.02562 * 11 9 8 13 13 C 1.35854 * 120.95631 * 179.97438 * 12 11 9 14 14 C 1.40491 * 119.88155 * 359.97438 * 13 12 11 15 15 C 1.40481 * 121.84867 * 180.02562 * 14 13 12 16 16 N 1.31217 * 119.93449 * 179.97438 * 15 14 13 17 17 C 1.32555 * 122.81148 * 359.97438 * 16 15 14 18 18 C 1.36215 * 121.84462 * 0.02562 * 17 16 15 19 19 C 1.40761 * 118.67330 * 359.95808 * 18 17 16 20 20 C 1.38534 * 119.72858 * 179.72706 * 11 9 8 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.07998 * 119.52285 * 0.02562 * 12 11 9 43 43 H 1.08006 * 120.05951 * 180.02562 * 13 12 11 44 44 H 1.07994 * 120.03102 * 359.96217 * 15 14 13 45 45 H 1.08004 * 119.07878 * 180.02562 * 17 16 15 46 46 H 1.07995 * 120.66665 * 179.97438 * 18 17 16 47 47 H 1.07997 * 120.36440 * 359.97438 * 20 11 9 48 48 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 49 49 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3103 -4.6047 4.5676 11 6 1.1950 -6.4236 3.6136 12 6 0.4762 -6.9090 2.5071 13 6 0.0124 -8.1856 2.4805 14 6 0.2508 -9.0398 3.5702 15 6 -0.2092 -10.3670 3.5862 16 7 0.0352 -11.1323 4.6237 17 6 0.7099 -10.7109 5.6840 18 6 1.1984 -9.4421 5.7673 19 6 0.9767 -8.5610 4.6922 20 6 1.4507 -7.2427 4.7012 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2368 1.3803 2.2411 26 14 6.5117 -1.1167 1.0710 27 1 6.7647 -0.9108 -0.3777 28 1 7.8064 -1.2561 1.7848 29 1 5.7058 -2.3494 1.2623 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 0.2907 -6.2578 1.6658 43 1 -0.5378 -8.5436 1.6228 44 1 -0.7636 -10.7571 2.7455 45 1 0.8769 -11.3926 6.5049 46 1 1.7453 -9.1186 6.6407 47 1 2.0077 -6.8686 5.5474 48 1 3.9897 -1.4834 0.8938 49 1 7.2068 1.3785 2.2443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700713979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:09 Heat of formation + Delta-G solvation = 19.469412 kcal Electronic energy + Delta-G solvation = -28493.149180 eV Core-core repulsion = 24612.914187 eV Total energy + Delta-G solvation = -3880.234993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29197 -39.78714 -37.76425 -37.22624 -34.96794 -33.42393 -33.09678 -32.10218 -31.12841 -30.04952 -29.88650 -26.55517 -26.01654 -24.59988 -24.20206 -22.81655 -22.45707 -21.21776 -21.10858 -19.48120 -18.61503 -18.06159 -17.43982 -17.04589 -16.45007 -15.74249 -15.64942 -15.35874 -15.06046 -14.60293 -14.38246 -14.12189 -14.05158 -14.03475 -13.88397 -13.62111 -13.32554 -13.23525 -12.74991 -12.63798 -12.39334 -12.28566 -11.90410 -11.67258 -11.55406 -11.39345 -11.05811 -10.87412 -10.78780 -10.67936 -10.49167 -10.28803 -10.17391 -10.07273 -9.95886 -9.82760 -9.54124 -9.43607 -9.02715 -8.86494 -8.53091 -7.25848 -5.75741 -3.10617 -0.18909 0.26668 1.43057 2.20514 3.03313 3.13961 3.37946 3.40290 3.46868 3.68558 3.96695 4.07351 4.25072 4.31798 4.45034 4.56775 4.59986 4.72235 4.79615 5.05548 5.10807 5.16170 5.24343 5.27949 5.35846 5.44742 5.48875 5.55775 5.59098 5.60527 5.76050 5.81460 5.86037 5.87568 5.98575 6.08360 6.16398 6.20132 6.24267 6.27717 6.34858 6.40634 6.48445 6.58240 6.62479 6.75189 7.02609 7.35134 7.41507 7.52312 8.00528 8.11656 8.42841 9.21093 9.93668 10.12733 11.42321 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002280 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.238917 B =12275.930144 C =13489.271785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.190 3.810 5 H 0.058 0.942 6 C -0.140 4.140 7 C 0.120 3.880 8 N -0.722 5.722 9 C 0.549 3.451 10 O -0.528 6.528 11 C -0.109 4.109 12 C -0.094 4.094 13 C -0.091 4.091 14 C -0.099 4.099 15 C 0.143 3.857 16 N -0.484 5.484 17 C 0.072 3.928 18 C -0.143 4.143 19 C -0.034 4.034 20 C -0.044 4.044 21 N -0.746 5.746 22 C -0.236 4.236 23 H 0.094 0.906 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.880 3.120 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.396 0.604 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.166 0.834 45 H 0.155 0.845 46 H 0.142 0.858 47 H 0.148 0.852 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 -21.474 -0.681 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.080 3.920 5 H 0.076 0.924 6 C -0.178 4.178 7 C -0.003 4.003 8 N -0.373 5.373 9 C 0.335 3.665 10 O -0.405 6.405 11 C -0.113 4.113 12 C -0.113 4.113 13 C -0.110 4.110 14 C -0.101 4.101 15 C -0.029 4.029 16 N -0.192 5.192 17 C -0.071 4.071 18 C -0.163 4.163 19 C -0.039 4.039 20 C -0.063 4.063 21 N -0.389 5.389 22 C -0.366 4.366 23 H 0.111 0.889 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.711 3.289 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.183 0.817 45 H 0.173 0.827 46 H 0.160 0.840 47 H 0.166 0.834 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.594 -21.787 0.285 27.389 hybrid contribution 0.918 -0.214 -0.921 1.318 sum -15.676 -22.001 -0.636 27.022 Atomic orbital electron populations 1.21932 0.96902 1.00596 1.01036 1.21737 0.93522 0.98012 0.99875 1.21835 1.04482 0.94419 0.99068 1.20168 0.84723 0.91081 0.96013 0.92361 1.22190 1.01061 0.98243 0.96354 1.21519 1.01050 0.79062 0.98623 1.46045 1.57450 1.13933 1.19876 1.18225 0.80130 0.85066 0.83088 1.90827 1.39938 1.75386 1.34364 1.20122 1.00810 0.94562 0.95825 1.20993 0.96726 0.96227 0.97330 1.20880 0.99442 0.93181 0.97531 1.19164 0.99561 0.96215 0.95200 1.23258 0.94952 0.88654 0.96028 1.67392 1.12934 1.38043 1.00837 1.22216 0.94529 0.94401 0.95949 1.22033 1.00801 0.94660 0.98773 1.18160 0.97241 0.94257 0.94249 1.21481 0.95766 0.91122 0.97925 1.42824 1.00508 1.20475 1.75078 1.19044 0.89261 0.95929 1.32374 0.88853 1.24655 0.96240 0.97089 1.01115 1.69686 1.06971 1.29991 1.51406 0.86615 0.79964 0.83550 0.78748 1.21292 1.21899 1.20435 0.93071 0.93656 0.93281 0.92320 0.89275 0.95187 0.93815 0.90965 0.91722 0.90025 0.91143 0.76887 0.85042 0.84234 0.81738 0.82740 0.83980 0.83442 0.80732 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.85 37.16 0.33 -1.51 16 2 C -0.11 -1.74 2.69 -90.62 -0.24 -1.98 16 3 C -0.14 -2.53 8.26 37.16 0.31 -2.23 16 4 C 0.19 3.27 2.02 -67.93 -0.14 3.14 16 5 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 6 C -0.14 -1.86 4.65 -26.73 -0.12 -1.98 16 7 C 0.12 1.79 5.56 -4.04 -0.02 1.77 16 8 N -0.72 -8.71 5.50 -61.24 -0.34 -9.05 16 9 C 0.55 7.67 7.77 -12.31 -0.10 7.57 16 10 O -0.53 -9.68 16.30 5.33 0.09 -9.60 16 11 C -0.11 -1.18 5.87 -104.95 -0.62 -1.80 16 12 C -0.09 -0.74 9.44 -39.55 -0.37 -1.11 16 13 C -0.09 -0.61 9.77 -39.59 -0.39 -1.00 16 14 C -0.10 -0.84 5.75 -106.78 -0.61 -1.45 16 15 C 0.14 1.09 11.04 -16.97 -0.19 0.91 16 16 N -0.48 -4.48 10.29 -13.15 -0.14 -4.61 16 17 C 0.07 0.58 11.07 -17.97 -0.20 0.38 16 18 C -0.14 -1.16 9.88 -39.36 -0.39 -1.55 16 19 C -0.03 -0.32 5.74 -106.83 -0.61 -0.94 16 20 C -0.04 -0.47 9.38 -38.78 -0.36 -0.83 16 21 N -0.75 -16.23 4.26 -53.42 -0.23 -16.46 16 22 C -0.24 -6.25 8.05 -15.06 -0.12 -6.37 16 23 H 0.09 2.66 7.63 -52.49 -0.40 2.26 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 26 Si 0.88 21.93 27.74 -169.99 -4.72 17.21 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.28 -6.56 6.51 56.52 0.37 -6.19 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.52 6.32 -51.93 -0.33 0.19 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.94 6.01 -51.93 -0.31 1.63 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.52 7.75 -51.93 -0.40 1.11 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.40 3.35 6.45 -40.82 -0.26 3.09 16 42 H 0.13 0.69 6.34 -52.49 -0.33 0.36 16 43 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 44 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.15 1.59 7.62 -52.49 -0.40 1.19 16 48 H 0.36 7.86 5.66 -40.82 -0.23 7.63 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -34.21 395.65 -9.77 -43.98 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.23 Total: 9.53 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.95 Total: -8.95 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.08 Total: -58.15 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.21 -9.77 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700713979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.447 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds