Wall clock time and date at job start Wed Apr 1 2020 01:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21544 * 120.00154 * 359.97438 * 9 8 7 11 11 C 1.47891 * 119.99670 * 179.97438 * 9 8 7 12 12 C 1.40592 * 119.73424 * 0.02562 * 11 9 8 13 13 C 1.35854 * 120.95631 * 179.97438 * 12 11 9 14 14 C 1.40491 * 119.88155 * 359.97438 * 13 12 11 15 15 C 1.40481 * 121.84867 * 180.02562 * 14 13 12 16 16 N 1.31217 * 119.93449 * 179.97438 * 15 14 13 17 17 C 1.32555 * 122.81148 * 359.97438 * 16 15 14 18 18 C 1.36215 * 121.84462 * 0.02562 * 17 16 15 19 19 C 1.40761 * 118.67330 * 359.95808 * 18 17 16 20 20 C 1.38534 * 119.72858 * 179.72706 * 11 9 8 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.07998 * 119.52285 * 0.02562 * 12 11 9 43 43 H 1.08006 * 120.05951 * 180.02562 * 13 12 11 44 44 H 1.07994 * 120.03102 * 359.96217 * 15 14 13 45 45 H 1.08004 * 119.07878 * 180.02562 * 17 16 15 46 46 H 1.07995 * 120.66665 * 179.97438 * 18 17 16 47 47 H 1.07997 * 120.36440 * 359.97438 * 20 11 9 48 48 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 49 49 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3103 -4.6047 4.5676 11 6 1.1950 -6.4236 3.6136 12 6 0.4762 -6.9090 2.5071 13 6 0.0124 -8.1856 2.4805 14 6 0.2508 -9.0398 3.5702 15 6 -0.2092 -10.3670 3.5862 16 7 0.0352 -11.1323 4.6237 17 6 0.7099 -10.7109 5.6840 18 6 1.1984 -9.4421 5.7673 19 6 0.9767 -8.5610 4.6922 20 6 1.4507 -7.2427 4.7012 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2368 1.3803 2.2411 26 14 6.5117 -1.1167 1.0710 27 1 6.7647 -0.9108 -0.3777 28 1 7.8064 -1.2561 1.7848 29 1 5.7058 -2.3494 1.2623 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 0.2907 -6.2578 1.6658 43 1 -0.5378 -8.5436 1.6228 44 1 -0.7636 -10.7571 2.7455 45 1 0.8769 -11.3926 6.5049 46 1 1.7453 -9.1186 6.6407 47 1 2.0077 -6.8686 5.5474 48 1 3.9897 -1.4834 0.8938 49 1 7.2068 1.3785 2.2443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700713979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:08 Heat of formation + Delta-G solvation = -3.431966 kcal Electronic energy + Delta-G solvation = -28494.142258 eV Core-core repulsion = 24612.914187 eV Total energy + Delta-G solvation = -3881.228071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.95967 -40.79423 -39.11427 -38.00254 -36.18763 -34.92753 -34.03616 -33.16889 -32.55097 -31.29688 -30.65226 -27.80740 -27.28545 -25.68697 -24.81126 -24.31142 -23.28428 -22.51895 -22.08697 -20.93554 -19.64804 -19.20156 -18.69071 -17.76127 -17.22763 -17.07702 -16.75207 -16.46041 -15.93857 -15.90345 -15.43129 -15.34864 -15.16830 -14.99479 -14.78983 -14.62815 -14.55697 -14.46008 -13.86991 -13.80088 -13.46820 -13.39909 -13.04302 -12.95681 -12.91426 -12.67516 -12.49043 -12.22850 -12.11568 -12.01432 -11.86398 -11.73118 -11.43912 -11.28896 -11.28087 -11.14500 -10.82113 -10.53661 -10.36038 -10.05832 -9.21358 -9.13863 -7.96038 -5.25929 -0.85598 -0.36255 0.78780 1.35642 1.39363 1.44437 1.45406 2.01214 2.29087 2.51080 3.03913 3.35411 3.46234 3.50081 3.51643 3.64704 3.72596 3.80884 3.88158 3.99177 4.05571 4.11983 4.22419 4.27761 4.39075 4.47019 4.58593 4.64185 4.67521 4.73653 4.78154 4.80000 4.91237 4.96924 5.01651 5.02590 5.11790 5.18549 5.20888 5.25048 5.26629 5.33481 5.38929 5.45276 5.60023 5.69653 5.70098 5.78821 5.88406 6.28006 6.45363 6.94478 7.11508 7.15474 7.92407 8.09294 9.25872 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002280 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.238917 B =12275.930144 C =13489.271785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.181 3.819 5 H 0.039 0.961 6 C -0.123 4.123 7 C 0.127 3.873 8 N -0.702 5.702 9 C 0.545 3.455 10 O -0.585 6.585 11 C -0.118 4.118 12 C -0.099 4.099 13 C -0.072 4.072 14 C -0.110 4.110 15 C 0.148 3.852 16 N -0.508 5.508 17 C 0.067 3.933 18 C -0.156 4.156 19 C -0.050 4.050 20 C -0.063 4.063 21 N -0.749 5.749 22 C -0.199 4.199 23 H 0.062 0.938 24 C -0.071 4.071 25 N -0.988 5.988 26 Si 0.945 3.055 27 H -0.278 1.278 28 H -0.307 1.307 29 H -0.257 1.257 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.418 0.582 42 H 0.163 0.837 43 H 0.184 0.816 44 H 0.201 0.799 45 H 0.175 0.825 46 H 0.153 0.847 47 H 0.130 0.870 48 H 0.363 0.637 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.338 -24.851 -3.799 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.196 4.196 4 C 0.073 3.927 5 H 0.057 0.943 6 C -0.161 4.161 7 C 0.003 3.997 8 N -0.355 5.355 9 C 0.333 3.667 10 O -0.466 6.466 11 C -0.123 4.123 12 C -0.117 4.117 13 C -0.091 4.091 14 C -0.112 4.112 15 C -0.024 4.024 16 N -0.216 5.216 17 C -0.075 4.075 18 C -0.176 4.176 19 C -0.055 4.055 20 C -0.082 4.082 21 N -0.391 5.391 22 C -0.330 4.330 23 H 0.080 0.920 24 C -0.261 4.261 25 N -0.640 5.640 26 Si 0.774 3.226 27 H -0.205 1.205 28 H -0.235 1.235 29 H -0.181 1.181 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.258 0.742 42 H 0.181 0.819 43 H 0.201 0.799 44 H 0.218 0.782 45 H 0.192 0.808 46 H 0.170 0.830 47 H 0.148 0.852 48 H 0.196 0.804 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.120 -25.216 -2.890 32.388 hybrid contribution 1.837 0.841 0.086 2.022 sum -18.283 -24.375 -2.804 30.598 Atomic orbital electron populations 1.21862 0.93478 1.02748 1.01624 1.21615 0.96274 0.95734 0.98815 1.21762 1.01441 0.96802 0.99578 1.20450 0.81953 0.94160 0.96187 0.94276 1.22068 1.03425 0.94921 0.95715 1.21230 0.98557 0.80696 0.99230 1.45773 1.56896 1.12552 1.20248 1.18797 0.79143 0.86344 0.82449 1.90798 1.42583 1.76693 1.36529 1.19997 1.02236 0.92625 0.97406 1.21252 0.96187 0.97314 0.96938 1.21341 0.97853 0.92085 0.97797 1.19484 0.99352 0.97063 0.95343 1.23854 0.94041 0.88071 0.96389 1.67460 1.13760 1.38797 1.01623 1.22560 0.93944 0.94591 0.96380 1.22210 1.01380 0.94812 0.99149 1.18331 0.97860 0.93827 0.95503 1.21436 0.96724 0.92111 0.97920 1.42860 1.02637 1.18998 1.74643 1.18963 0.89110 0.95749 1.29212 0.92030 1.25380 0.97514 1.00018 1.03228 1.69867 1.06733 1.32638 1.54757 0.85549 0.78003 0.81069 0.77980 1.20483 1.23478 1.18143 0.93356 0.92329 0.90320 0.91521 0.93799 0.93034 0.94977 0.86912 0.89744 0.94076 0.92899 0.74248 0.81944 0.79897 0.78211 0.80843 0.82971 0.85191 0.80420 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.85 71.98 0.64 -2.24 16 2 C -0.10 -3.00 2.69 -10.80 -0.03 -3.03 16 3 C -0.14 -4.94 8.26 71.98 0.59 -4.35 16 4 C 0.18 5.97 2.02 44.99 0.09 6.06 16 5 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 6 C -0.12 -2.85 4.65 30.60 0.14 -2.71 16 7 C 0.13 3.66 5.56 86.38 0.48 4.14 16 8 N -0.70 -15.49 5.50 -465.95 -2.56 -18.06 16 9 C 0.54 15.11 7.77 86.80 0.67 15.78 16 10 O -0.58 -22.56 16.30 -3.85 -0.06 -22.62 16 11 C -0.12 -2.45 5.87 -20.08 -0.12 -2.57 16 12 C -0.10 -1.17 9.44 22.29 0.21 -0.96 16 13 C -0.07 -0.64 9.77 22.27 0.22 -0.42 16 14 C -0.11 -1.54 5.75 -21.26 -0.12 -1.67 16 15 C 0.15 1.78 11.04 85.33 0.94 2.72 16 16 N -0.51 -8.31 10.29 -195.51 -2.01 -10.32 16 17 C 0.07 1.01 11.07 84.11 0.93 1.94 16 18 C -0.16 -2.50 9.88 22.42 0.22 -2.28 16 19 C -0.05 -0.93 5.74 -21.29 -0.12 -1.05 16 20 C -0.06 -1.37 9.38 22.79 0.21 -1.16 16 21 N -0.75 -32.49 4.26 -322.93 -1.37 -33.86 16 22 C -0.20 -10.91 8.05 84.04 0.68 -10.23 16 23 H 0.06 3.72 7.63 -2.91 -0.02 3.70 16 24 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 25 N -0.99 -64.14 13.97 21.65 0.30 -63.84 16 26 Si 0.94 46.47 27.74 68.60 1.90 48.37 16 27 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 28 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 29 H -0.26 -11.50 6.51 99.48 0.65 -10.85 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.19 6.32 -2.39 -0.02 1.17 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.95 6.01 -2.39 -0.01 1.94 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.78 6.17 -2.39 -0.01 1.77 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.42 5.28 6.45 -92.71 -0.60 4.68 16 42 H 0.16 0.80 6.34 -2.91 -0.02 0.78 16 43 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 44 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.13 3.14 7.62 -2.91 -0.02 3.12 16 48 H 0.36 15.40 5.66 -92.71 -0.52 14.88 16 49 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -82.14 395.65 2.09 -80.04 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.21 Total: 26.03 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 6.11 Total: -5.73 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.65 Total: -126.08 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -82.14 2.09 -80.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700713979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.612 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds