Wall clock time and date at job start Wed Apr 1 2020 00:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36826 * 125.03726 * 2 1 4 4 H 0.97003 * 125.06818 * 359.95856 * 3 2 1 5 5 C 1.37692 * 109.87087 * 180.02562 * 3 2 1 6 6 C 1.39123 * 133.50124 * 180.02562 * 5 3 2 7 7 C 1.37748 * 119.77925 * 179.97438 * 6 5 3 8 8 C 1.38835 * 120.66238 * 359.97438 * 7 6 5 9 9 C 1.36620 * 120.53153 * 0.02562 * 8 7 6 10 10 C 1.39638 * 119.76325 * 359.69569 * 9 8 7 11 11 C 1.34239 * 125.03118 * 179.97438 * 2 1 3 12 12 C 1.50707 * 126.50156 * 0.02562 * 11 2 1 13 13 C 1.50696 * 109.46987 * 90.01986 * 12 11 2 14 14 O 1.21283 * 120.00563 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99885 * 179.97438 * 13 12 11 16 16 C 1.46508 * 120.00015 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46810 * 179.97438 * 16 15 13 18 18 H 1.08998 * 112.85038 * 43.80987 * 17 16 15 19 19 C 1.53787 * 113.60890 * 175.00176 * 17 16 15 20 20 C 1.53784 * 87.07923 * 139.98364 * 19 17 16 21 21 H 1.09002 * 113.61478 * 89.11632 * 20 19 17 22 22 N 1.46497 * 113.61569 * 220.01663 * 20 19 17 23 23 C 1.36932 * 120.00479 * 205.00086 * 22 20 19 24 24 H 1.08003 * 119.99876 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00413 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99626 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00270 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46868 * 59.99725 * 27 25 23 29 29 H 1.48493 * 109.47208 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46879 * 300.00246 * 27 25 23 31 31 C 1.53779 * 87.08045 * 334.56667 * 20 19 17 32 32 H 1.09005 * 109.46984 * 270.00813 * 1 2 3 33 33 H 1.09003 * 109.46435 * 30.00249 * 1 2 3 34 34 H 1.08996 * 109.47571 * 149.99999 * 1 2 3 35 35 H 1.08003 * 120.11631 * 359.97438 * 6 5 3 36 36 H 1.07992 * 119.66990 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.73647 * 179.97438 * 8 7 6 38 38 H 1.08005 * 120.12503 * 180.02562 * 9 8 7 39 39 H 1.08996 * 109.46911 * 330.01906 * 12 11 2 40 40 H 1.08995 * 109.46686 * 210.01956 * 12 11 2 41 41 H 0.96999 * 120.00101 * 0.02562 * 15 13 12 42 42 H 1.09003 * 109.46643 * 60.00190 * 16 15 13 43 43 H 1.08993 * 109.47454 * 300.00286 * 16 15 13 44 44 H 1.09004 * 113.61202 * 254.53117 * 19 17 16 45 45 H 1.08994 * 113.61447 * 25.43549 * 19 17 16 46 46 H 0.97009 * 119.99534 * 24.99936 * 22 20 19 47 47 H 0.97001 * 119.99577 * 180.02562 * 26 25 23 48 48 H 1.09006 * 113.61307 * 270.88660 * 31 20 19 49 49 H 1.08999 * 113.69146 * 139.99146 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.1203 0.0000 4 1 1.9625 2.0324 -0.0006 5 6 3.6215 0.7601 -0.0006 6 6 4.8099 1.4835 -0.0004 7 6 6.0159 0.8180 -0.0006 8 6 6.0589 -0.5696 -0.0005 9 6 4.9042 -1.2998 -0.0007 10 6 3.6705 -0.6457 0.0054 11 6 2.2776 -1.0992 0.0005 12 6 1.8002 -2.5287 0.0006 13 6 1.6421 -3.0055 -1.4202 14 8 1.8928 -2.2584 -2.3421 15 7 1.2230 -4.2626 -1.6664 16 6 1.0687 -4.7260 -3.0476 17 6 0.5854 -6.1777 -3.0474 18 1 -0.2080 -6.3596 -2.3225 19 6 0.2744 -6.7234 -4.4512 20 6 0.9221 -8.0419 -3.9962 21 1 0.2214 -8.7348 -3.5304 22 7 1.7503 -8.6748 -5.0257 23 6 1.9664 -10.0266 -4.9953 24 1 1.5259 -10.6264 -4.2126 25 6 2.7515 -10.6262 -5.9705 26 7 3.2878 -9.8953 -6.9248 27 14 3.0468 -12.4702 -5.9286 28 1 1.7472 -13.1819 -6.0266 29 1 3.9111 -12.8592 -7.0717 30 1 3.7163 -12.8354 -4.6544 31 6 1.7264 -7.2069 -2.9860 32 1 -0.3633 0.0001 1.0277 33 1 -0.3632 0.8900 -0.5139 34 1 -0.3634 -0.8899 -0.5138 35 1 4.7869 2.5633 0.0000 36 1 6.9373 1.3814 -0.0009 37 1 7.0128 -1.0760 -0.0011 38 1 4.9453 -2.3791 -0.0002 39 1 0.8406 -2.5912 0.5138 40 1 2.5289 -3.1549 0.5151 41 1 1.0228 -4.8602 -0.9291 42 1 2.0281 -4.6629 -3.5613 43 1 0.3395 -4.1000 -3.5617 44 1 -0.7921 -6.8100 -4.6595 45 1 0.8226 -6.2194 -5.2470 46 1 2.1456 -8.1361 -5.7290 47 1 3.8362 -10.3143 -7.6064 48 1 2.6717 -6.8349 -3.3813 49 1 1.8332 -7.6826 -2.0111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707069046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:52 Heat of formation + Delta-G solvation = 40.395702 kcal Electronic energy + Delta-G solvation = -28162.155706 eV Core-core repulsion = 24282.828145 eV Total energy + Delta-G solvation = -3879.327561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.59080 -39.61155 -38.37817 -37.25089 -34.58714 -33.45946 -33.21472 -31.26214 -30.61754 -30.11970 -28.63416 -27.18157 -26.01892 -25.05880 -23.79668 -22.42963 -21.62951 -21.08757 -20.79804 -19.35345 -18.91555 -17.82154 -17.11704 -16.87240 -16.68653 -15.95705 -15.42016 -15.30327 -15.01336 -14.69385 -14.64687 -14.28392 -14.00865 -13.73424 -13.51891 -13.36580 -13.26153 -13.15976 -12.89422 -12.75446 -12.52191 -12.13528 -11.85778 -11.76405 -11.63186 -11.49555 -11.34834 -11.20817 -10.98132 -10.81068 -10.51389 -10.20710 -10.14676 -9.90476 -9.80136 -9.61817 -9.42259 -8.93224 -8.84411 -8.29904 -7.76984 -6.94840 -5.76733 -3.05593 0.96002 1.49130 2.35521 2.73390 2.85353 3.36109 3.44082 3.48389 3.49697 3.80149 4.39786 4.55698 4.59561 4.68543 4.81810 4.88025 4.93990 4.97804 5.01829 5.06857 5.13306 5.18501 5.27918 5.29977 5.33575 5.47931 5.48590 5.54238 5.55020 5.67655 5.75212 5.86338 5.89877 5.96321 5.98075 6.11310 6.30304 6.31212 6.34832 6.39336 6.48081 6.52669 6.53565 6.62503 6.63969 6.85826 6.99990 7.13960 7.31943 7.58517 7.69597 8.33011 8.41839 9.52635 10.11351 10.45465 11.45577 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.001868 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.291780 B =14986.056790 C =16137.525751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 N -0.592 5.592 4 H 0.413 0.587 5 C 0.097 3.903 6 C -0.132 4.132 7 C -0.102 4.102 8 C -0.147 4.147 9 C -0.069 4.069 10 C -0.088 4.088 11 C -0.150 4.150 12 C -0.065 4.065 13 C 0.507 3.493 14 O -0.532 6.532 15 N -0.729 5.729 16 C 0.133 3.867 17 C -0.126 4.126 18 H 0.087 0.913 19 C -0.143 4.143 20 C 0.166 3.834 21 H 0.075 0.925 22 N -0.713 5.713 23 C -0.244 4.244 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.908 3.092 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 C -0.160 4.160 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.399 0.601 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.077 0.923 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 24.059 19.835 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 N -0.196 5.196 4 H 0.249 0.751 5 C -0.010 4.010 6 C -0.153 4.153 7 C -0.121 4.121 8 C -0.166 4.166 9 C -0.088 4.088 10 C -0.093 4.093 11 C -0.158 4.158 12 C -0.106 4.106 13 C 0.293 3.707 14 O -0.407 6.407 15 N -0.381 5.381 16 C 0.010 3.990 17 C -0.146 4.146 18 H 0.106 0.894 19 C -0.183 4.183 20 C 0.054 3.946 21 H 0.093 0.907 22 N -0.351 5.351 23 C -0.376 4.376 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.739 3.261 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.212 1.212 31 C -0.201 4.201 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.233 0.767 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.109 24.487 19.128 31.343 hybrid contribution 0.196 -0.622 0.025 0.652 sum -3.913 23.866 19.153 30.850 Atomic orbital electron populations 1.20476 0.87831 1.03976 1.02853 1.19982 0.93118 0.85458 1.02961 1.41594 1.04039 1.07937 1.66006 0.75055 1.18160 0.84471 0.94071 1.04288 1.19984 0.89763 0.98799 1.06710 1.20776 0.96604 0.94455 1.00289 1.20626 0.98020 0.93964 1.03968 1.20280 0.90578 0.99602 0.98303 1.18979 0.92961 0.91907 1.05424 1.19246 0.90768 0.92732 1.13034 1.19946 1.03057 0.93114 0.94436 1.20686 0.76889 0.81640 0.91500 1.90721 1.48960 1.54788 1.46279 1.46091 1.68960 1.13671 1.09403 1.21394 1.01247 0.94274 0.82110 1.22632 0.99849 0.92581 0.99501 0.89431 1.23451 1.00631 0.99014 0.95173 1.21520 0.92217 0.90751 0.90160 0.90714 1.42409 1.57356 1.05734 1.29567 1.19256 1.25432 0.84239 1.08636 0.91161 1.24778 1.00523 0.97985 0.97699 1.69655 1.37829 1.34502 1.16034 0.86259 0.77642 0.85309 0.76919 1.21261 1.21696 1.21246 1.23941 0.97655 0.97566 1.00975 0.90416 0.91235 0.89800 0.86487 0.85902 0.86064 0.86253 0.88449 0.88235 0.76740 0.91414 0.92014 0.92072 0.90159 0.78062 0.93402 0.90391 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 9.98 36.01 0.36 -0.24 16 2 C 0.09 0.90 7.08 -81.77 -0.58 0.32 16 3 N -0.59 -5.39 6.07 -6.95 -0.04 -5.44 16 4 H 0.41 2.43 8.96 -40.82 -0.37 2.07 16 5 C 0.10 1.08 7.28 -83.99 -0.61 0.47 16 6 C -0.13 -1.27 10.08 -39.43 -0.40 -1.67 16 7 C -0.10 -0.96 10.01 -39.54 -0.40 -1.35 16 8 C -0.15 -1.50 9.97 -39.95 -0.40 -1.90 16 9 C -0.07 -0.80 10.05 -39.64 -0.40 -1.20 16 10 C -0.09 -1.09 6.35 -105.14 -0.67 -1.76 16 11 C -0.15 -1.69 4.81 -102.71 -0.49 -2.18 16 12 C -0.06 -0.59 5.77 -29.03 -0.17 -0.76 16 13 C 0.51 6.33 7.82 -10.99 -0.09 6.24 16 14 O -0.53 -9.13 16.03 5.55 0.09 -9.04 16 15 N -0.73 -8.01 5.56 -60.29 -0.33 -8.35 16 16 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 17 C -0.13 -1.67 3.75 -89.81 -0.34 -2.01 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 19 C -0.14 -2.28 7.39 -25.91 -0.19 -2.47 16 20 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 21 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 22 N -0.71 -17.86 5.40 -52.64 -0.28 -18.15 16 23 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 27 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 C -0.16 -2.64 7.43 -25.92 -0.19 -2.83 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.10 0.60 7.69 -51.93 -0.40 0.20 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.40 3.25 8.47 -40.82 -0.35 2.90 16 42 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 46 H 0.39 10.32 7.92 -40.82 -0.32 10.00 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -35.58 408.23 -11.53 -47.11 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.69 Total: 12.10 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -5.13 Total: -14.14 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.06 Total: -59.54 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.58 -11.53 -47.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707069046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.509 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds