Wall clock time and date at job start Wed Apr 1 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36826 * 125.03726 * 2 1 4 4 H 0.97003 * 125.06818 * 359.95856 * 3 2 1 5 5 C 1.37692 * 109.87087 * 180.02562 * 3 2 1 6 6 C 1.39123 * 133.50124 * 180.02562 * 5 3 2 7 7 C 1.37748 * 119.77925 * 179.97438 * 6 5 3 8 8 C 1.38835 * 120.66238 * 359.97438 * 7 6 5 9 9 C 1.36620 * 120.53153 * 0.02562 * 8 7 6 10 10 C 1.39638 * 119.76325 * 359.69569 * 9 8 7 11 11 C 1.34239 * 125.03118 * 179.97438 * 2 1 3 12 12 C 1.50707 * 126.50156 * 0.02562 * 11 2 1 13 13 C 1.50696 * 109.46987 * 90.01986 * 12 11 2 14 14 O 1.21283 * 120.00563 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99885 * 179.97438 * 13 12 11 16 16 C 1.46508 * 120.00015 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46810 * 179.97438 * 16 15 13 18 18 H 1.08998 * 112.85038 * 43.80987 * 17 16 15 19 19 C 1.53787 * 113.60890 * 175.00176 * 17 16 15 20 20 C 1.53784 * 87.07923 * 139.98364 * 19 17 16 21 21 H 1.09002 * 113.61478 * 89.11632 * 20 19 17 22 22 N 1.46497 * 113.61569 * 220.01663 * 20 19 17 23 23 C 1.36932 * 120.00479 * 205.00086 * 22 20 19 24 24 H 1.08003 * 119.99876 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00413 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99626 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00270 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46868 * 59.99725 * 27 25 23 29 29 H 1.48493 * 109.47208 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46879 * 300.00246 * 27 25 23 31 31 C 1.53779 * 87.08045 * 334.56667 * 20 19 17 32 32 H 1.09005 * 109.46984 * 270.00813 * 1 2 3 33 33 H 1.09003 * 109.46435 * 30.00249 * 1 2 3 34 34 H 1.08996 * 109.47571 * 149.99999 * 1 2 3 35 35 H 1.08003 * 120.11631 * 359.97438 * 6 5 3 36 36 H 1.07992 * 119.66990 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.73647 * 179.97438 * 8 7 6 38 38 H 1.08005 * 120.12503 * 180.02562 * 9 8 7 39 39 H 1.08996 * 109.46911 * 330.01906 * 12 11 2 40 40 H 1.08995 * 109.46686 * 210.01956 * 12 11 2 41 41 H 0.96999 * 120.00101 * 0.02562 * 15 13 12 42 42 H 1.09003 * 109.46643 * 60.00190 * 16 15 13 43 43 H 1.08993 * 109.47454 * 300.00286 * 16 15 13 44 44 H 1.09004 * 113.61202 * 254.53117 * 19 17 16 45 45 H 1.08994 * 113.61447 * 25.43549 * 19 17 16 46 46 H 0.97009 * 119.99534 * 24.99936 * 22 20 19 47 47 H 0.97001 * 119.99577 * 180.02562 * 26 25 23 48 48 H 1.09006 * 113.61307 * 270.88660 * 31 20 19 49 49 H 1.08999 * 113.69146 * 139.99146 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.1203 0.0000 4 1 1.9625 2.0324 -0.0006 5 6 3.6215 0.7601 -0.0006 6 6 4.8099 1.4835 -0.0004 7 6 6.0159 0.8180 -0.0006 8 6 6.0589 -0.5696 -0.0005 9 6 4.9042 -1.2998 -0.0007 10 6 3.6705 -0.6457 0.0054 11 6 2.2776 -1.0992 0.0005 12 6 1.8002 -2.5287 0.0006 13 6 1.6421 -3.0055 -1.4202 14 8 1.8928 -2.2584 -2.3421 15 7 1.2230 -4.2626 -1.6664 16 6 1.0687 -4.7260 -3.0476 17 6 0.5854 -6.1777 -3.0474 18 1 -0.2080 -6.3596 -2.3225 19 6 0.2744 -6.7234 -4.4512 20 6 0.9221 -8.0419 -3.9962 21 1 0.2214 -8.7348 -3.5304 22 7 1.7503 -8.6748 -5.0257 23 6 1.9664 -10.0266 -4.9953 24 1 1.5259 -10.6264 -4.2126 25 6 2.7515 -10.6262 -5.9705 26 7 3.2878 -9.8953 -6.9248 27 14 3.0468 -12.4702 -5.9286 28 1 1.7472 -13.1819 -6.0266 29 1 3.9111 -12.8592 -7.0717 30 1 3.7163 -12.8354 -4.6544 31 6 1.7264 -7.2069 -2.9860 32 1 -0.3633 0.0001 1.0277 33 1 -0.3632 0.8900 -0.5139 34 1 -0.3634 -0.8899 -0.5138 35 1 4.7869 2.5633 0.0000 36 1 6.9373 1.3814 -0.0009 37 1 7.0128 -1.0760 -0.0011 38 1 4.9453 -2.3791 -0.0002 39 1 0.8406 -2.5912 0.5138 40 1 2.5289 -3.1549 0.5151 41 1 1.0228 -4.8602 -0.9291 42 1 2.0281 -4.6629 -3.5613 43 1 0.3395 -4.1000 -3.5617 44 1 -0.7921 -6.8100 -4.6595 45 1 0.8226 -6.2194 -5.2470 46 1 2.1456 -8.1361 -5.7290 47 1 3.8362 -10.3143 -7.6064 48 1 2.6717 -6.8349 -3.3813 49 1 1.8332 -7.6826 -2.0111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707069046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:51 Heat of formation + Delta-G solvation = 17.375055 kcal Electronic energy + Delta-G solvation = -28163.153956 eV Core-core repulsion = 24282.828145 eV Total energy + Delta-G solvation = -3880.325811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30861 -40.69934 -39.68157 -37.96947 -35.98875 -34.93237 -34.18735 -32.21185 -31.88628 -31.19358 -29.54041 -28.18769 -26.89924 -26.43570 -25.67374 -23.17986 -22.56700 -22.28197 -21.76593 -20.55534 -19.94054 -19.02759 -18.55114 -17.89926 -17.41029 -17.11364 -16.52457 -16.42791 -16.03275 -15.90930 -15.71634 -15.36055 -15.09073 -15.00720 -14.75526 -14.44581 -14.33235 -13.84321 -13.77333 -13.58785 -13.33978 -13.22227 -13.11514 -13.02780 -12.88679 -12.78149 -12.58844 -12.31979 -12.23834 -12.19022 -12.06637 -11.70585 -11.55293 -11.52938 -11.07806 -10.87915 -10.77788 -10.40550 -9.97660 -9.05018 -8.96642 -8.49802 -7.93354 -5.21818 0.21404 0.71479 1.47614 1.50964 1.57012 1.60246 1.78075 2.20838 2.44887 2.57984 3.01334 3.38334 3.73575 3.74168 3.78998 3.87504 3.92115 3.98914 4.16831 4.23231 4.27793 4.28957 4.37407 4.40780 4.46276 4.48943 4.59062 4.60470 4.67139 4.75973 4.80609 4.85164 4.93300 4.99759 5.01334 5.05910 5.09070 5.09443 5.24935 5.25376 5.40304 5.49498 5.56862 5.57539 5.72075 5.76822 5.79661 5.90435 6.26265 6.28712 6.70572 6.73478 7.33871 7.41545 8.12745 8.34358 9.30057 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.001868 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.291780 B =14986.056790 C =16137.525751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.094 3.906 3 N -0.586 5.586 4 H 0.426 0.574 5 C 0.074 3.926 6 C -0.135 4.135 7 C -0.110 4.110 8 C -0.154 4.154 9 C -0.096 4.096 10 C -0.119 4.119 11 C -0.184 4.184 12 C -0.056 4.056 13 C 0.507 3.493 14 O -0.584 6.584 15 N -0.716 5.716 16 C 0.140 3.860 17 C -0.092 4.092 18 H 0.126 0.874 19 C -0.138 4.138 20 C 0.143 3.857 21 H 0.083 0.917 22 N -0.731 5.731 23 C -0.242 4.242 24 H 0.080 0.920 25 C -0.082 4.082 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.276 1.276 29 H -0.299 1.299 30 H -0.277 1.277 31 C -0.153 4.153 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.417 0.583 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.051 0.949 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 24.615 22.375 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.015 4.015 3 N -0.191 5.191 4 H 0.265 0.735 5 C -0.033 4.033 6 C -0.156 4.156 7 C -0.129 4.129 8 C -0.173 4.173 9 C -0.115 4.115 10 C -0.123 4.123 11 C -0.191 4.191 12 C -0.096 4.096 13 C 0.295 3.705 14 O -0.464 6.464 15 N -0.369 5.369 16 C 0.016 3.984 17 C -0.111 4.111 18 H 0.143 0.857 19 C -0.178 4.178 20 C 0.034 3.966 21 H 0.101 0.899 22 N -0.368 5.368 23 C -0.374 4.374 24 H 0.098 0.902 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.202 1.202 29 H -0.225 1.225 30 H -0.203 1.203 31 C -0.194 4.194 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.254 0.746 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.923 25.048 21.757 33.702 hybrid contribution 0.715 -0.705 -0.720 1.236 sum -5.208 24.343 21.037 32.592 Atomic orbital electron populations 1.20580 0.85425 1.04354 1.04520 1.20537 0.94623 0.85193 1.01125 1.41638 1.03408 1.08727 1.65314 0.73452 1.18472 0.85669 0.94107 1.05007 1.20347 0.89400 1.00106 1.05709 1.21134 0.97714 0.94325 0.99771 1.20921 0.98279 0.94728 1.03420 1.20465 0.91264 0.99878 0.99868 1.19390 0.93840 0.92999 1.06086 1.19577 0.90610 0.94137 1.14794 1.19977 1.05165 0.92270 0.92154 1.21318 0.75505 0.81274 0.92424 1.90699 1.51285 1.56278 1.48132 1.45934 1.68276 1.13694 1.08971 1.21137 0.99666 0.94340 0.83286 1.22466 0.98927 0.91390 0.98349 0.85650 1.23335 1.01160 0.96877 0.96417 1.21974 0.92640 0.92012 0.90016 0.89916 1.42646 1.58426 1.05068 1.30670 1.19713 1.24010 0.85634 1.08045 0.90183 1.25633 1.01364 1.02457 0.97954 1.69830 1.39343 1.36154 1.17080 0.85186 0.77603 0.80139 0.76701 1.20181 1.22517 1.20313 1.23714 0.97240 0.97977 1.00470 0.87953 0.90129 0.90126 0.84083 0.83340 0.84614 0.86384 0.84943 0.86976 0.74628 0.94469 0.91996 0.90217 0.91893 0.79771 0.94152 0.93049 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.98 71.24 0.71 -0.23 16 2 C 0.09 1.70 7.08 40.87 0.29 1.99 16 3 N -0.59 -10.10 6.07 -175.91 -1.07 -11.17 16 4 H 0.43 4.44 8.96 -92.71 -0.83 3.61 16 5 C 0.07 1.64 7.28 39.03 0.28 1.93 16 6 C -0.14 -2.50 10.08 22.37 0.23 -2.28 16 7 C -0.11 -1.99 10.01 22.30 0.22 -1.77 16 8 C -0.15 -3.19 9.97 22.03 0.22 -2.97 16 9 C -0.10 -2.33 10.05 22.23 0.22 -2.10 16 10 C -0.12 -2.98 6.35 -20.20 -0.13 -3.11 16 11 C -0.18 -4.02 4.81 -18.62 -0.09 -4.11 16 12 C -0.06 -0.93 5.77 29.10 0.17 -0.76 16 13 C 0.51 12.19 7.82 87.66 0.69 12.88 16 14 O -0.58 -20.36 16.03 -3.04 -0.05 -20.41 16 15 N -0.72 -14.37 5.56 -463.05 -2.57 -16.94 16 16 C 0.14 3.56 5.51 86.38 0.48 4.04 16 17 C -0.09 -2.22 3.75 -10.27 -0.04 -2.26 16 18 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 19 C -0.14 -4.25 7.39 31.12 0.23 -4.02 16 20 C 0.14 5.39 4.48 45.52 0.20 5.60 16 21 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 22 N -0.73 -37.18 5.40 -320.45 -1.73 -38.91 16 23 C -0.24 -13.47 9.97 84.03 0.84 -12.64 16 24 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 26 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 27 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 30 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 31 C -0.15 -4.87 7.43 31.12 0.23 -4.64 16 32 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.91 7.66 -2.39 -0.02 0.90 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.13 1.21 7.69 -2.39 -0.02 1.19 16 40 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.42 5.40 8.47 -92.71 -0.79 4.62 16 42 H 0.04 1.19 7.84 -2.39 -0.02 1.17 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 46 H 0.37 20.63 7.92 -92.70 -0.73 19.90 16 47 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 48 H 0.05 1.92 7.90 -2.38 -0.02 1.91 16 49 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -80.62 408.23 0.74 -79.88 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -1.37 Total: 38.48 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.22 Total: -18.78 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -5.09 Total: -127.62 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -80.62 0.74 -79.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707069046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.251 kcal (2) G-P(sol) polarization free energy of solvation -80.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds