Wall clock time and date at job start Wed Apr 1 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 H 1.09003 * 109.47135 * 54.99945 * 3 2 1 5 5 F 1.39902 * 109.47308 * 295.00132 * 3 2 1 6 6 C 1.50698 * 109.46857 * 175.00183 * 3 2 1 7 7 O 1.21275 * 120.00228 * 45.00433 * 6 3 2 8 8 N 1.34784 * 119.99960 * 224.99948 * 6 3 2 9 9 C 1.46499 * 120.00109 * 180.02562 * 8 6 3 10 10 H 1.08998 * 115.55193 * 350.69687 * 9 8 6 11 11 C 1.53049 * 117.52985 * 136.42905 * 9 8 6 12 12 C 1.52724 * 117.50380 * 204.99799 * 9 8 6 13 13 C 1.53222 * 117.82842 * 0.24639 * 12 9 8 14 14 C 1.53259 * 108.75857 * 197.05219 * 13 12 9 15 15 N 1.46812 * 109.45364 * 304.31466 * 14 13 12 16 16 C 1.46896 * 111.00010 * 189.20183 * 15 14 13 17 17 C 1.50702 * 109.47216 * 170.00124 * 16 15 14 18 18 O 1.21297 * 119.99543 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00220 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99808 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00241 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99624 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99787 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47429 * 59.99661 * 24 22 20 26 26 H 1.48501 * 109.46855 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47042 * 300.00148 * 24 22 20 28 28 C 1.46814 * 111.55580 * 64.83934 * 15 14 13 29 29 C 1.53254 * 109.45134 * 295.16353 * 28 15 14 30 30 H 1.09001 * 109.46781 * 300.00112 * 1 2 3 31 31 H 1.09002 * 109.47093 * 59.99890 * 1 2 3 32 32 H 1.08994 * 109.47228 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46973 * 240.00402 * 2 1 3 34 34 H 1.08996 * 109.47422 * 119.99847 * 2 1 3 35 35 H 0.97003 * 119.99735 * 0.02562 * 8 6 3 36 36 H 1.09005 * 117.50346 * 359.97438 * 11 9 8 37 37 H 1.08997 * 117.51086 * 214.93045 * 11 9 8 38 38 H 1.09002 * 109.61601 * 77.22248 * 13 12 9 39 39 H 1.09004 * 109.61060 * 316.87607 * 13 12 9 40 40 H 1.08997 * 109.47585 * 64.31059 * 14 13 12 41 41 H 1.09010 * 109.46956 * 184.32436 * 14 13 12 42 42 H 1.09002 * 109.47007 * 289.99492 * 16 15 14 43 43 H 1.09001 * 109.47515 * 50.00180 * 16 15 14 44 44 H 0.97000 * 120.00297 * 359.97438 * 19 17 16 45 45 H 0.96996 * 120.00123 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.46909 * 55.15570 * 28 15 14 47 47 H 1.08997 * 109.47404 * 175.16482 * 28 15 14 48 48 H 1.08995 * 109.61160 * 175.33915 * 29 28 15 49 49 H 1.09005 * 109.60764 * 295.68025 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6812 -0.5447 8 7 4.1467 2.2941 0.9774 9 6 5.6068 2.2962 1.0974 10 1 6.1216 1.4821 0.5873 11 6 6.3103 3.6544 1.1499 12 6 6.2059 2.7971 2.4099 13 6 5.2406 3.2554 3.5079 14 6 6.0175 4.0941 4.5286 15 7 7.1520 3.3148 5.0396 16 6 7.7906 3.9962 6.1735 17 6 8.7827 3.0669 6.8239 18 8 8.9417 1.9469 6.3862 19 7 9.4932 3.4802 7.8920 20 6 10.3954 2.6345 8.4840 21 1 10.5371 1.6374 8.0943 22 6 11.1284 3.0609 9.5849 23 7 10.9565 4.2744 10.0587 24 14 12.3582 1.9089 10.3911 25 1 13.3932 1.5178 9.4006 26 1 13.0042 2.5980 11.5370 27 1 11.6543 0.6950 10.8770 28 6 8.1281 3.0261 3.9816 29 6 7.4842 2.1201 2.9265 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.6152 2.9043 1.5123 36 1 5.6867 4.5468 1.0947 37 1 7.2879 3.7338 0.6745 38 1 4.8088 2.3851 4.0022 39 1 4.4459 3.8581 3.0682 40 1 6.3861 5.0007 4.0488 41 1 5.3591 4.3621 5.3551 42 1 8.3071 4.8876 5.8175 43 1 7.0304 4.2826 6.9003 44 1 9.3663 4.3760 8.2418 45 1 11.4684 4.5722 10.8269 46 1 8.4450 3.9589 3.5152 47 1 8.9935 2.5232 4.4132 48 1 8.1782 1.9713 2.0993 49 1 7.2358 1.1574 3.3734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713094776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:29 Heat of formation + Delta-G solvation = -99.462094 kcal Electronic energy + Delta-G solvation = -29598.169526 eV Core-core repulsion = 25282.008051 eV Total energy + Delta-G solvation = -4316.161475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.30959 -40.47020 -39.28123 -38.15267 -36.25241 -34.43777 -33.93435 -33.48984 -31.28776 -30.90355 -30.20253 -28.12280 -26.46146 -24.22342 -23.47653 -23.25849 -22.11235 -21.37897 -20.88037 -19.20367 -18.70274 -18.17349 -17.85095 -17.32049 -16.49409 -16.05916 -15.88210 -15.55210 -14.98344 -14.90964 -14.72747 -14.63075 -14.36938 -14.16517 -13.94152 -13.73206 -13.53986 -13.35905 -13.27114 -12.80988 -12.75939 -12.40095 -12.29928 -12.23525 -12.07321 -11.75391 -11.57125 -11.50610 -11.36799 -11.34611 -11.11104 -11.00280 -10.67115 -10.48062 -10.42428 -10.21798 -10.19486 -9.89452 -9.46247 -9.00819 -8.39924 -7.97573 -7.82705 -6.42050 -3.82780 1.97578 2.46774 3.19641 3.25422 3.29735 3.59179 3.89972 3.91732 3.99195 4.02169 4.13488 4.24083 4.40071 4.41893 4.53376 4.63667 4.80835 4.85092 4.95359 5.03948 5.16984 5.22396 5.26770 5.29857 5.45369 5.46347 5.53950 5.55694 5.58102 5.61352 5.63518 5.73962 5.77138 5.83550 5.85769 5.97018 5.99558 6.08603 6.15295 6.28083 6.41953 6.50076 6.95977 7.31598 7.44858 7.54743 7.66335 8.06146 8.61617 9.17819 9.54344 10.06189 10.75595 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.001793 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.933832 B =15614.627620 C =15781.375940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.084 3.916 4 H 0.100 0.900 5 F -0.190 7.190 6 C 0.495 3.505 7 O -0.518 6.518 8 N -0.690 5.690 9 C 0.080 3.920 10 H 0.138 0.862 11 C -0.183 4.183 12 C -0.117 4.117 13 C -0.076 4.076 14 C 0.060 3.940 15 N -0.516 5.516 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.058 3.942 29 C -0.073 4.073 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.022 0.978 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 1.109 -17.085 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.045 3.955 4 H 0.118 0.882 5 F -0.171 7.171 6 C 0.279 3.721 7 O -0.392 6.392 8 N -0.340 5.340 9 C -0.026 4.026 10 H 0.156 0.844 11 C -0.221 4.221 12 C -0.118 4.118 13 C -0.114 4.114 14 C -0.068 4.068 15 N -0.241 5.241 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.070 4.070 29 C -0.111 4.111 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.239 0.761 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.123 0.877 48 H 0.084 0.916 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.280 -0.542 -17.571 25.361 hybrid contribution 0.596 1.408 0.661 1.666 sum -17.684 0.866 -16.910 24.483 Atomic orbital electron populations 1.21778 0.93997 1.02815 1.02516 1.22006 0.97390 0.93310 1.05276 1.21628 0.91704 0.96579 0.85596 0.88184 1.92890 1.91998 1.83892 1.48270 1.20979 0.90353 0.80725 0.80081 1.90741 1.66043 1.38991 1.43452 1.45454 1.06976 1.39111 1.42467 1.21822 0.79773 0.99111 1.01851 0.84427 1.23628 1.02499 0.94592 1.01392 1.22166 0.98901 1.01833 0.88932 1.21133 0.95720 1.00018 0.94521 1.22042 0.93475 0.94132 0.97192 1.61301 1.09365 1.45555 1.07868 1.21822 0.97590 0.95228 0.93775 1.19753 0.84869 0.88837 0.83682 1.90486 1.69494 1.21082 1.65056 1.41868 1.35711 1.15905 1.26610 1.19647 1.15228 0.97782 1.10196 0.87966 1.25256 0.98840 0.96701 0.97138 1.69599 1.42226 1.17109 1.25422 0.85925 0.80164 0.79698 0.78466 1.19936 1.21006 1.19902 1.22218 0.96068 0.97665 0.91023 1.21236 0.92984 0.99310 0.97538 0.92241 0.91934 0.91566 0.89360 0.89548 0.76143 0.88615 0.87873 0.90258 0.92219 0.95146 0.90768 0.93613 0.89432 0.77518 0.91847 0.96016 0.87699 0.91561 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.83 37.16 0.37 -0.42 16 2 C -0.14 -0.95 5.41 -26.73 -0.14 -1.10 16 3 C 0.08 0.61 3.77 -27.88 -0.11 0.51 16 4 H 0.10 0.40 8.00 -51.93 -0.42 -0.02 16 5 F -0.19 -1.79 16.75 2.25 0.04 -1.75 16 6 C 0.49 4.96 7.17 -10.98 -0.08 4.88 16 7 O -0.52 -7.27 16.17 5.56 0.09 -7.18 16 8 N -0.69 -5.77 5.35 -53.92 -0.29 -6.05 16 9 C 0.08 0.79 6.16 -68.05 -0.42 0.37 16 10 H 0.14 1.59 7.40 -51.93 -0.38 1.20 16 11 C -0.18 -1.65 9.86 -26.83 -0.26 -1.92 16 12 C -0.12 -1.21 2.03 -154.35 -0.31 -1.53 16 13 C -0.08 -0.74 5.29 -26.48 -0.14 -0.88 16 14 C 0.06 0.70 5.49 -3.74 -0.02 0.68 16 15 N -0.52 -8.17 4.33 -235.89 -1.02 -9.20 16 16 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 17 C 0.44 10.21 7.42 -10.99 -0.08 10.13 16 18 O -0.58 -15.12 13.90 5.54 0.08 -15.05 16 19 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 20 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 C 0.06 0.90 5.12 -3.74 -0.02 0.88 16 29 C -0.07 -0.95 5.89 -26.29 -0.15 -1.10 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.34 7.94 -51.93 -0.41 -0.07 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 2.29 7.13 -40.82 -0.29 2.00 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 40 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.07 0.80 7.95 -51.92 -0.41 0.39 16 42 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 43 H 0.09 1.37 7.94 -51.93 -0.41 0.95 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 47 H 0.10 2.04 5.72 -51.93 -0.30 1.74 16 48 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -32.87 399.65 -8.96 -41.83 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.88 Total: 9.77 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.64 Total: 3.43 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.64 Total: -52.96 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.23 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.87 -8.96 -41.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713094776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.630 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds