Wall clock time and date at job start Wed Apr 1 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 H 1.09003 * 109.47135 * 54.99945 * 3 2 1 5 5 F 1.39902 * 109.47308 * 295.00132 * 3 2 1 6 6 C 1.50698 * 109.46857 * 175.00183 * 3 2 1 7 7 O 1.21275 * 120.00228 * 45.00433 * 6 3 2 8 8 N 1.34784 * 119.99960 * 224.99948 * 6 3 2 9 9 C 1.46499 * 120.00109 * 180.02562 * 8 6 3 10 10 H 1.08998 * 115.55193 * 350.69687 * 9 8 6 11 11 C 1.53049 * 117.52985 * 136.42905 * 9 8 6 12 12 C 1.52724 * 117.50380 * 204.99799 * 9 8 6 13 13 C 1.53222 * 117.82842 * 0.24639 * 12 9 8 14 14 C 1.53259 * 108.75857 * 197.05219 * 13 12 9 15 15 N 1.46812 * 109.45364 * 304.31466 * 14 13 12 16 16 C 1.46896 * 111.00010 * 189.20183 * 15 14 13 17 17 C 1.50702 * 109.47216 * 170.00124 * 16 15 14 18 18 O 1.21297 * 119.99543 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00220 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99808 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00241 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99624 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99787 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47429 * 59.99661 * 24 22 20 26 26 H 1.48501 * 109.46855 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47042 * 300.00148 * 24 22 20 28 28 C 1.46814 * 111.55580 * 64.83934 * 15 14 13 29 29 C 1.53254 * 109.45134 * 295.16353 * 28 15 14 30 30 H 1.09001 * 109.46781 * 300.00112 * 1 2 3 31 31 H 1.09002 * 109.47093 * 59.99890 * 1 2 3 32 32 H 1.08994 * 109.47228 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46973 * 240.00402 * 2 1 3 34 34 H 1.08996 * 109.47422 * 119.99847 * 2 1 3 35 35 H 0.97003 * 119.99735 * 0.02562 * 8 6 3 36 36 H 1.09005 * 117.50346 * 359.97438 * 11 9 8 37 37 H 1.08997 * 117.51086 * 214.93045 * 11 9 8 38 38 H 1.09002 * 109.61601 * 77.22248 * 13 12 9 39 39 H 1.09004 * 109.61060 * 316.87607 * 13 12 9 40 40 H 1.08997 * 109.47585 * 64.31059 * 14 13 12 41 41 H 1.09010 * 109.46956 * 184.32436 * 14 13 12 42 42 H 1.09002 * 109.47007 * 289.99492 * 16 15 14 43 43 H 1.09001 * 109.47515 * 50.00180 * 16 15 14 44 44 H 0.97000 * 120.00297 * 359.97438 * 19 17 16 45 45 H 0.96996 * 120.00123 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.46909 * 55.15570 * 28 15 14 47 47 H 1.08997 * 109.47404 * 175.16482 * 28 15 14 48 48 H 1.08995 * 109.61160 * 175.33915 * 29 28 15 49 49 H 1.09005 * 109.60764 * 295.68025 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6812 -0.5447 8 7 4.1467 2.2941 0.9774 9 6 5.6068 2.2962 1.0974 10 1 6.1216 1.4821 0.5873 11 6 6.3103 3.6544 1.1499 12 6 6.2059 2.7971 2.4099 13 6 5.2406 3.2554 3.5079 14 6 6.0175 4.0941 4.5286 15 7 7.1520 3.3148 5.0396 16 6 7.7906 3.9962 6.1735 17 6 8.7827 3.0669 6.8239 18 8 8.9417 1.9469 6.3862 19 7 9.4932 3.4802 7.8920 20 6 10.3954 2.6345 8.4840 21 1 10.5371 1.6374 8.0943 22 6 11.1284 3.0609 9.5849 23 7 10.9565 4.2744 10.0587 24 14 12.3582 1.9089 10.3911 25 1 13.3932 1.5178 9.4006 26 1 13.0042 2.5980 11.5370 27 1 11.6543 0.6950 10.8770 28 6 8.1281 3.0261 3.9816 29 6 7.4842 2.1201 2.9265 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.6152 2.9043 1.5123 36 1 5.6867 4.5468 1.0947 37 1 7.2879 3.7338 0.6745 38 1 4.8088 2.3851 4.0022 39 1 4.4459 3.8581 3.0682 40 1 6.3861 5.0007 4.0488 41 1 5.3591 4.3621 5.3551 42 1 8.3071 4.8876 5.8175 43 1 7.0304 4.2826 6.9003 44 1 9.3663 4.3760 8.2418 45 1 11.4684 4.5722 10.8269 46 1 8.4450 3.9589 3.5152 47 1 8.9935 2.5232 4.4132 48 1 8.1782 1.9713 2.0993 49 1 7.2358 1.1574 3.3734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713094776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:28 Heat of formation + Delta-G solvation = -122.824660 kcal Electronic energy + Delta-G solvation = -29599.182602 eV Core-core repulsion = 25282.008051 eV Total energy + Delta-G solvation = -4317.174552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.95698 -41.33619 -40.48043 -39.59674 -37.44447 -35.86426 -34.99959 -34.37157 -33.26373 -31.88883 -31.35034 -28.73862 -27.95011 -25.94302 -24.40068 -23.98022 -23.02009 -22.20263 -21.64698 -20.99235 -19.86365 -19.57964 -18.89926 -18.03416 -17.67634 -17.17126 -16.79482 -16.58092 -16.43502 -16.26685 -15.84789 -15.66377 -15.41615 -15.29948 -15.28559 -14.85052 -14.60574 -14.38608 -13.95401 -13.91978 -13.82108 -13.48372 -13.30352 -13.13996 -13.03265 -12.91850 -12.89993 -12.72718 -12.53357 -12.42153 -12.13120 -12.08037 -12.03188 -11.86365 -11.72746 -11.49860 -11.35010 -11.03120 -10.72108 -10.24827 -9.98410 -9.75116 -9.09945 -8.45052 -5.93274 1.21019 1.39872 1.41641 1.52279 1.77011 2.08391 2.29302 2.74264 2.89259 3.21954 3.28792 3.42537 3.48619 3.58986 3.66444 3.72991 3.85885 3.89371 3.92889 4.26587 4.30784 4.33774 4.39076 4.50050 4.52094 4.52396 4.59065 4.62334 4.68252 4.73284 4.81541 4.87985 4.89561 4.98450 5.04944 5.07808 5.14135 5.19326 5.27658 5.34217 5.36991 5.37456 5.42246 5.93878 6.14465 6.29604 6.34351 6.63194 6.97628 7.15133 7.59375 8.15662 8.72052 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.001793 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.933832 B =15614.627620 C =15781.375940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.087 3.913 4 H 0.144 0.856 5 F -0.202 7.202 6 C 0.490 3.510 7 O -0.567 6.567 8 N -0.674 5.674 9 C 0.076 3.924 10 H 0.115 0.885 11 C -0.164 4.164 12 C -0.120 4.120 13 C -0.071 4.071 14 C 0.058 3.942 15 N -0.536 5.536 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.063 3.937 29 C -0.069 4.069 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.420 0.580 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.034 0.966 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 2.975 -17.056 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.048 3.952 4 H 0.162 0.838 5 F -0.183 7.183 6 C 0.275 3.725 7 O -0.445 6.445 8 N -0.325 5.325 9 C -0.030 4.030 10 H 0.133 0.867 11 C -0.202 4.202 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.069 4.069 15 N -0.261 5.261 16 C -0.072 4.072 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.065 4.065 29 C -0.107 4.107 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.258 0.742 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.363 1.374 -17.527 26.902 hybrid contribution 1.237 0.798 0.609 1.593 sum -19.126 2.172 -16.918 25.627 Atomic orbital electron populations 1.21765 0.92480 1.03365 1.03096 1.22015 0.98621 0.93009 1.04455 1.21828 0.89654 0.97363 0.86339 0.83838 1.92866 1.91889 1.84111 1.49408 1.21563 0.91539 0.79954 0.79408 1.90724 1.67352 1.41000 1.45457 1.45334 1.06387 1.38782 1.42042 1.21630 0.80693 0.99462 1.01220 0.86686 1.23705 1.02708 0.94576 0.99246 1.22008 0.97853 1.02643 0.89651 1.21161 0.96044 1.00005 0.93677 1.22200 0.92053 0.94362 0.98307 1.61281 1.10162 1.46965 1.07731 1.21698 0.96793 0.93998 0.94687 1.20854 0.84652 0.89150 0.82578 1.90469 1.70522 1.23217 1.65793 1.41938 1.36102 1.15832 1.27432 1.19599 1.17284 0.97626 1.11622 0.90439 1.26001 1.00006 0.98206 0.97055 1.69659 1.42763 1.18024 1.25682 0.85020 0.77887 0.77873 0.77739 1.19843 1.19489 1.19810 1.22031 0.94998 0.98056 0.91394 1.21115 0.94763 0.97871 0.96942 0.90484 0.92452 0.91127 0.91650 0.89051 0.74152 0.86328 0.87817 0.91233 0.88254 0.93792 0.89232 0.91810 0.87074 0.77056 0.91363 0.94822 0.92408 0.90932 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.83 71.98 0.71 -0.53 16 2 C -0.14 -1.76 5.41 30.60 0.17 -1.60 16 3 C 0.09 1.08 3.77 29.85 0.11 1.19 16 4 H 0.14 0.54 8.00 -2.39 -0.02 0.52 16 5 F -0.20 -3.48 16.75 44.97 0.75 -2.72 16 6 C 0.49 9.21 7.17 87.66 0.63 9.84 16 7 O -0.57 -16.20 16.17 -3.02 -0.05 -16.24 16 8 N -0.67 -9.60 5.35 -442.89 -2.37 -11.97 16 9 C 0.08 1.39 6.16 44.92 0.28 1.67 16 10 H 0.12 2.70 7.40 -2.39 -0.02 2.68 16 11 C -0.16 -2.49 9.86 30.53 0.30 -2.19 16 12 C -0.12 -2.26 2.03 -52.08 -0.11 -2.37 16 13 C -0.07 -1.14 5.29 30.76 0.16 -0.98 16 14 C 0.06 1.16 5.49 86.41 0.47 1.64 16 15 N -0.54 -16.38 4.33 -900.21 -3.90 -20.28 16 16 C 0.06 1.99 5.45 85.56 0.47 2.46 16 17 C 0.44 20.74 7.42 87.66 0.65 21.39 16 18 O -0.61 -33.64 13.90 -3.08 -0.04 -33.68 16 19 N -0.58 -29.36 5.29 -306.98 -1.62 -30.98 16 20 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.47 13.05 21.67 0.28 -49.19 16 24 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 C 0.06 1.99 5.12 86.40 0.44 2.43 16 29 C -0.07 -1.81 5.89 30.88 0.18 -1.63 16 30 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.54 7.94 -2.39 -0.02 0.52 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 1.10 8.05 -2.39 -0.02 1.08 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 3.01 7.13 -92.71 -0.66 2.34 16 36 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.10 0.83 6.95 -2.39 -0.02 0.82 16 40 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 41 H 0.09 1.56 7.95 -2.38 -0.02 1.54 16 42 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 43 H 0.11 3.21 7.94 -2.39 -0.02 3.19 16 44 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 45 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 46 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 47 H 0.06 2.37 5.72 -2.39 -0.01 2.36 16 48 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 49 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -75.37 399.65 0.41 -74.96 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.42 Total: 31.95 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.75 Total: 13.10 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -7.61 Total: -112.41 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.09 Total: -49.93 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.75 Total: -2.72 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -75.37 0.41 -74.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713094776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.864 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds