Wall clock time and date at job start Wed Apr 1 2020 00:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34236 * 126.50495 * 2 1 4 4 N 1.36823 * 109.92981 * 179.71416 * 3 2 1 5 5 C 1.46498 * 125.06473 * 180.28666 * 4 3 2 6 6 C 1.50700 * 109.47141 * 264.97630 * 5 4 3 7 7 O 1.21280 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00039 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46917 * 185.11087 * 9 8 6 11 11 H 1.08999 * 109.87568 * 305.51437 * 10 9 8 12 12 C 1.54320 * 109.88414 * 66.53295 * 10 9 8 13 13 C 1.55400 * 102.83442 * 141.51905 * 12 10 9 14 14 C 1.54912 * 101.66264 * 324.66190 * 13 12 10 15 15 N 1.47025 * 109.88567 * 184.49950 * 10 9 8 16 16 C 1.36940 * 125.64874 * 61.60168 * 15 10 9 17 17 H 1.07997 * 119.99646 * 14.81745 * 16 15 10 18 18 C 1.38811 * 120.00036 * 194.81746 * 16 15 10 19 19 N 1.31611 * 120.00073 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99658 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47381 * 89.99798 * 20 18 16 22 22 H 1.48508 * 109.46829 * 209.99965 * 20 18 16 23 23 H 1.48497 * 109.47035 * 329.99516 * 20 18 16 24 24 C 1.37685 * 109.87716 * 0.26264 * 4 3 2 25 25 C 1.39126 * 133.51567 * 179.97438 * 24 4 3 26 26 C 1.37748 * 119.78513 * 179.97438 * 25 24 4 27 27 C 1.38831 * 120.66443 * 0.04128 * 26 25 24 28 28 C 1.36626 * 120.52586 * 359.96163 * 27 26 25 29 29 C 1.39628 * 119.76626 * 0.02562 * 28 27 26 30 30 H 1.09007 * 109.46962 * 90.02414 * 1 2 3 31 31 H 1.08998 * 109.47624 * 210.02381 * 1 2 3 32 32 H 1.08997 * 109.46793 * 330.03240 * 1 2 3 33 33 H 1.08000 * 125.03093 * 359.97428 * 3 2 1 34 34 H 1.09002 * 109.47008 * 24.97090 * 5 4 3 35 35 H 1.08998 * 109.47473 * 144.97557 * 5 4 3 36 36 H 0.97004 * 119.99766 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47168 * 305.10999 * 9 8 6 38 38 H 1.08996 * 109.47241 * 65.11417 * 9 8 6 39 39 H 1.09005 * 110.72014 * 259.97448 * 12 10 9 40 40 H 1.09001 * 110.72067 * 23.24541 * 12 10 9 41 41 H 1.08998 * 111.03670 * 206.53253 * 13 12 10 42 42 H 1.08994 * 110.89273 * 82.72620 * 13 12 10 43 43 H 1.09005 * 110.36759 * 278.08876 * 14 13 12 44 44 H 1.09001 * 110.46107 * 155.80813 * 14 13 12 45 45 H 0.97006 * 120.00157 * 179.97438 * 19 18 16 46 46 H 1.08005 * 120.10630 * 359.97438 * 25 24 4 47 47 H 1.07994 * 119.66667 * 180.02562 * 26 25 24 48 48 H 1.07998 * 119.73301 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.11336 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 7 3.6170 0.6887 0.0064 5 6 4.7657 1.5979 0.0143 6 6 5.2444 1.8146 -1.3981 7 8 4.6819 1.2636 -2.3204 8 7 6.2985 2.6201 -1.6362 9 6 6.7642 2.8304 -3.0092 10 6 8.0395 3.6756 -2.9913 11 1 7.8633 4.6005 -2.4421 12 6 9.1857 2.8823 -2.3292 13 6 10.4184 3.2724 -3.1914 14 6 9.7878 3.3971 -4.6009 15 7 8.4552 3.9828 -4.3677 16 6 7.7250 4.6943 -5.2819 17 1 6.8788 5.2818 -4.9576 18 6 8.0725 4.6604 -6.6254 19 7 9.1040 3.9448 -7.0205 20 14 7.0768 5.6316 -7.8724 21 1 7.6527 6.9930 -8.0135 22 1 7.1167 4.9387 -9.1853 23 1 5.6696 5.7348 -7.4098 24 6 3.6963 -0.6859 0.0049 25 6 4.7587 -1.5841 0.0088 26 6 4.5094 -2.9388 0.0062 27 6 3.2068 -3.4191 -0.0011 28 6 2.1486 -2.5548 -0.0051 29 6 2.3784 -1.1776 -0.0024 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8903 0.5133 33 1 1.9635 2.1034 -0.0004 34 1 4.4700 2.5531 0.4483 35 1 5.5696 1.1624 0.6077 36 1 6.7487 3.0606 -0.8985 37 1 6.9735 1.8667 -3.4734 38 1 5.9930 3.3484 -3.5791 39 1 9.3223 3.1938 -1.2936 40 1 8.9975 1.8103 -2.3889 41 1 11.1749 2.4880 -3.1699 42 1 10.8357 4.2247 -2.8645 43 1 9.6947 2.4143 -5.0631 44 1 10.3870 4.0559 -5.2294 45 1 9.3466 3.9208 -7.9594 46 1 5.7756 -1.2204 0.0138 47 1 5.3355 -3.6344 0.0097 48 1 3.0286 -4.4842 -0.0035 49 1 1.1379 -2.9357 -0.0113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713515824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:28 Heat of formation + Delta-G solvation = 28.185564 kcal Electronic energy + Delta-G solvation = -29156.746811 eV Core-core repulsion = 25276.889778 eV Total energy + Delta-G solvation = -3879.857032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38514 -40.70207 -39.27951 -37.86897 -35.81649 -34.70784 -34.42729 -31.80868 -31.32984 -30.82786 -30.33176 -29.16936 -26.88769 -26.37824 -25.15346 -23.60621 -22.57298 -22.07043 -21.54159 -21.14021 -20.43915 -19.00040 -18.20559 -18.02577 -17.51450 -17.14465 -16.54293 -16.48461 -16.30732 -15.94732 -15.75148 -15.35234 -15.02182 -14.80078 -14.64215 -14.49828 -14.03034 -13.95256 -13.69418 -13.63512 -13.61088 -13.43525 -13.07631 -12.94956 -12.92059 -12.90073 -12.67606 -12.46850 -12.22530 -12.06692 -11.90852 -11.75503 -11.67939 -11.52092 -11.42117 -11.09438 -10.70914 -10.39409 -10.14690 -9.08561 -8.89128 -8.44816 -7.92179 -5.29759 0.22435 0.69823 1.40938 1.43514 1.50462 1.51348 1.55350 1.86514 2.26037 2.47304 3.01021 3.27870 3.59057 3.73190 3.76335 3.83981 3.91619 3.95017 3.96756 4.10456 4.15558 4.24901 4.28767 4.42340 4.46848 4.48304 4.52043 4.66208 4.70068 4.86550 4.89464 4.93506 4.94680 4.97736 5.01894 5.12334 5.19025 5.20041 5.31798 5.32220 5.44060 5.54575 5.59733 5.63709 5.71231 5.75511 5.87183 5.91250 6.19954 6.31824 6.32219 6.56424 7.05590 7.21217 7.73197 8.38717 9.18799 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002487 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.306249 B =11254.288388 C =12067.838302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.195 4.195 3 C 0.049 3.951 4 N -0.473 5.473 5 C 0.099 3.901 6 C 0.484 3.516 7 O -0.584 6.584 8 N -0.700 5.700 9 C 0.131 3.869 10 C 0.149 3.851 11 H 0.057 0.943 12 C -0.111 4.111 13 C -0.134 4.134 14 C 0.172 3.828 15 N -0.612 5.612 16 C -0.240 4.240 17 H 0.077 0.923 18 C -0.061 4.061 19 N -0.946 5.946 20 Si 0.971 3.029 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.273 1.273 24 C 0.084 3.916 25 C -0.144 4.144 26 C -0.108 4.108 27 C -0.155 4.155 28 C -0.085 4.085 29 C -0.133 4.133 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.192 0.808 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.420 0.580 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.072 0.928 43 H -0.012 1.012 44 H 0.035 0.965 45 H 0.248 0.752 46 H 0.123 0.877 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 -7.570 23.532 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.202 4.202 3 C -0.075 4.075 4 N -0.156 5.156 5 C -0.026 4.026 6 C 0.269 3.731 7 O -0.463 6.463 8 N -0.354 5.354 9 C 0.005 3.995 10 C 0.041 3.959 11 H 0.074 0.926 12 C -0.149 4.149 13 C -0.172 4.172 14 C 0.047 3.953 15 N -0.336 5.336 16 C -0.369 4.369 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.594 5.594 20 Si 0.799 3.201 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.198 1.198 24 C -0.021 4.021 25 C -0.164 4.164 26 C -0.128 4.128 27 C -0.174 4.174 28 C -0.104 4.104 29 C -0.137 4.137 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.209 0.791 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.258 0.742 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.006 0.994 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.141 0.859 47 H 0.163 0.837 48 H 0.163 0.837 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.433 -7.650 22.653 25.704 hybrid contribution -0.063 0.588 -1.565 1.673 sum -9.496 -7.062 21.088 24.182 Atomic orbital electron populations 1.20094 0.87798 1.03156 1.01711 1.20668 0.96552 0.90615 1.12351 1.22071 0.81456 1.00393 1.03621 1.43485 1.05805 1.03558 1.62725 1.21862 0.90100 0.97911 0.92769 1.21792 0.80120 0.78517 0.92651 1.90782 1.57728 1.50080 1.47709 1.45765 1.31994 1.48108 1.09528 1.21648 0.97068 0.98468 0.82355 1.21364 0.92155 0.95607 0.86741 0.92552 1.22646 0.93261 0.99150 0.99838 1.22910 0.97406 1.01640 0.95249 1.21273 0.85529 0.94588 0.93870 1.44764 1.17048 1.61727 1.10055 1.19288 1.09718 1.20389 0.87488 0.90506 1.25698 0.99751 1.01168 0.98823 1.70137 1.29266 1.45055 1.14902 0.85196 0.78593 0.77940 0.78349 1.20643 1.22280 1.19838 1.18526 0.96038 0.83612 1.03944 1.20280 0.96834 0.92963 1.06343 1.21138 0.98006 0.94134 0.99472 1.20943 0.92201 1.00610 1.03632 1.20530 1.00151 0.90653 0.99017 1.19535 0.92497 0.94375 1.07342 0.92367 0.91361 0.90187 0.79115 0.82027 0.83727 0.74183 0.95195 0.95216 0.87148 0.91962 0.90044 0.90916 0.99379 0.94612 0.94320 0.85865 0.83729 0.83745 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.41 71.24 0.74 -0.46 16 2 C -0.20 -4.63 6.32 -18.63 -0.12 -4.75 16 3 C 0.05 1.07 11.19 83.00 0.93 2.00 16 4 N -0.47 -11.16 2.27 -520.01 -1.18 -12.34 16 5 C 0.10 1.63 6.48 85.63 0.56 2.18 16 6 C 0.48 13.30 7.90 87.66 0.69 14.00 16 7 O -0.58 -23.92 16.42 -3.03 -0.05 -23.97 16 8 N -0.70 -17.49 5.36 -463.07 -2.48 -19.97 16 9 C 0.13 4.91 5.10 86.38 0.44 5.36 16 10 C 0.15 5.40 3.19 45.34 0.14 5.55 16 11 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 12 C -0.11 -3.14 6.22 31.87 0.20 -2.94 16 13 C -0.13 -4.45 7.09 32.07 0.23 -4.22 16 14 C 0.17 8.32 5.42 86.86 0.47 8.79 16 15 N -0.61 -30.26 3.13 -668.24 -2.09 -32.35 16 16 C -0.24 -13.29 9.72 84.03 0.82 -12.47 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.06 -3.48 5.47 84.86 0.46 -3.01 16 19 N -0.95 -57.39 10.58 21.65 0.23 -57.16 16 20 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.08 2.31 6.80 39.03 0.27 2.58 16 25 C -0.14 -3.59 10.00 22.37 0.22 -3.36 16 26 C -0.11 -2.37 10.01 22.30 0.22 -2.14 16 27 C -0.15 -3.25 9.97 22.03 0.22 -3.03 16 28 C -0.09 -1.98 10.05 22.23 0.22 -1.76 16 29 C -0.13 -3.60 6.35 -20.20 -0.13 -3.72 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.16 1.28 8.12 -2.39 -0.02 1.26 16 35 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.42 6.43 8.40 -92.71 -0.78 5.65 16 37 H 0.03 1.32 8.03 -2.39 -0.02 1.31 16 38 H 0.03 1.32 7.86 -2.39 -0.02 1.31 16 39 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H -0.01 -0.65 8.06 -2.38 -0.02 -0.67 16 44 H 0.04 1.95 6.94 -2.39 -0.02 1.93 16 45 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 46 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 49 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -83.68 403.04 3.21 -80.47 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.16 Total: 18.18 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.59 Total: -1.43 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -5.52 Total: -121.82 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -83.68 3.21 -80.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713515824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.652 kcal (2) G-P(sol) polarization free energy of solvation -83.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds