Wall clock time and date at job start Wed Apr 1 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47574 * 2 1 4 4 H 1.09002 * 109.46943 * 55.37318 * 3 2 1 5 5 C 1.52995 * 109.47191 * 175.37752 * 3 2 1 6 6 N 1.46499 * 109.47038 * 174.99894 * 5 3 2 7 7 C 1.34776 * 120.00520 * 180.02562 * 6 5 3 8 8 O 1.21288 * 119.99427 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00332 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.48812 * 40.70283 * 9 7 6 11 11 C 1.54103 * 110.54920 * 277.99754 * 9 7 6 12 12 N 1.47388 * 103.70361 * 241.22549 * 11 9 7 13 13 C 1.46499 * 125.37962 * 180.02562 * 12 11 9 14 14 C 1.33943 * 109.21051 * 0.11667 * 12 11 9 15 15 O 1.21587 * 123.04345 * 179.90109 * 14 12 11 16 16 N 1.33950 * 113.91915 * 359.92037 * 14 12 11 17 17 N 1.46907 * 109.46657 * 295.37828 * 3 2 1 18 18 C 1.46902 * 110.99732 * 302.88316 * 17 3 2 19 19 C 1.50697 * 109.47001 * 185.63989 * 18 17 3 20 20 O 1.21294 * 120.00059 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00541 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00632 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99905 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00326 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99378 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00003 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47235 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46828 * 119.99951 * 26 24 22 29 29 H 1.48500 * 109.46902 * 239.99975 * 26 24 22 30 30 H 1.08995 * 109.47036 * 178.73145 * 1 2 3 31 31 H 1.09004 * 109.46764 * 298.73414 * 1 2 3 32 32 H 1.09000 * 109.47084 * 58.73177 * 1 2 3 33 33 H 1.09001 * 109.47395 * 239.99382 * 2 1 3 34 34 H 1.09002 * 109.47381 * 119.99927 * 2 1 3 35 35 H 1.08996 * 109.47086 * 55.00115 * 5 3 2 36 36 H 1.08994 * 109.47354 * 294.99442 * 5 3 2 37 37 H 0.97004 * 119.99825 * 359.97438 * 6 5 3 38 38 H 1.09003 * 110.55009 * 359.85903 * 11 9 7 39 39 H 1.08995 * 110.54688 * 122.66427 * 11 9 7 40 40 H 1.08999 * 109.47309 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.46851 * 300.06873 * 13 12 11 42 42 H 1.09002 * 109.46772 * 60.06184 * 13 12 11 43 43 H 0.96997 * 125.41150 * 180.02562 * 16 14 12 44 44 H 1.00895 * 111.00217 * 66.83493 * 17 3 2 45 45 H 1.08997 * 109.47172 * 305.63915 * 18 17 3 46 46 H 1.08999 * 109.47042 * 65.64308 * 18 17 3 47 47 H 0.97009 * 119.99457 * 0.02562 * 21 19 18 48 48 H 0.97004 * 119.99388 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6107 1.9797 0.8457 5 6 3.5656 1.4440 0.1162 6 7 4.0632 2.8166 -0.0036 7 6 5.3863 3.0627 0.0685 8 8 6.1651 2.1475 0.2332 9 6 5.8981 4.4747 -0.0554 10 1 5.2519 5.1638 0.4882 11 6 6.0012 4.8846 -1.5373 12 7 7.4356 5.1681 -1.7223 13 6 8.0598 5.6027 -2.9743 14 6 8.0781 4.9634 -0.5649 15 8 9.2766 5.1222 -0.4348 16 7 7.2810 4.5674 0.4361 17 7 1.6437 2.1020 -1.2514 18 6 2.1483 1.3649 -2.4177 19 6 1.8430 2.1409 -3.6729 20 8 1.2625 3.2036 -3.6029 21 7 2.2148 1.6541 -4.8734 22 6 1.9366 2.3597 -6.0154 23 1 1.4190 3.3056 -5.9531 24 6 2.3205 1.8581 -7.2530 25 7 2.9498 0.7069 -7.3288 26 14 1.9407 2.8193 -8.8091 27 1 1.2296 4.0739 -8.4548 28 1 3.2083 3.1499 -9.5084 29 1 1.0828 1.9984 -9.7009 30 1 -0.3633 -1.0274 -0.0228 31 1 -0.3633 0.4941 0.9012 32 1 -0.3633 0.5334 -0.8784 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.9912 0.8325 -0.6794 36 1 3.8567 1.0353 1.0838 37 1 3.4403 3.5485 -0.1357 38 1 5.6845 4.0660 -2.1836 39 1 5.4060 5.7773 -1.7295 40 1 9.1305 5.7360 -2.8195 41 1 7.8944 4.8485 -3.7437 42 1 7.6187 6.5478 -3.2912 43 1 7.5700 4.3731 1.3414 44 1 0.6421 2.2135 -1.2999 45 1 3.2263 1.2328 -2.3254 46 1 1.6656 0.3889 -2.4674 47 1 2.6787 0.8040 -4.9295 48 1 3.2181 0.3569 -8.1928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714095532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:13 Heat of formation + Delta-G solvation = -80.015138 kcal Electronic energy + Delta-G solvation = -30693.855873 eV Core-core repulsion = 26398.457643 eV Total energy + Delta-G solvation = -4295.398230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43780 -39.61455 -38.63308 -37.37479 -36.25607 -34.34844 -34.14459 -33.94678 -31.85244 -31.22954 -30.11284 -28.54791 -27.29422 -26.54079 -24.49054 -24.11455 -23.01354 -20.73635 -20.65620 -20.26257 -19.20707 -18.03906 -17.85563 -17.67707 -16.91764 -16.54293 -16.02563 -15.73599 -15.39957 -15.15985 -14.93469 -14.46093 -14.32196 -14.26183 -14.14498 -13.94762 -13.87560 -13.58012 -13.53735 -13.35531 -12.73897 -12.58380 -12.44282 -12.37083 -12.13327 -11.95560 -11.84902 -11.56568 -11.45294 -11.15026 -10.95398 -10.88070 -10.43035 -10.39458 -10.27960 -10.26193 -9.57420 -9.37724 -9.13756 -8.72692 -8.59785 -8.17495 -8.02194 -6.47223 -3.88452 2.25678 2.52830 2.81658 3.11766 3.17446 3.23122 3.29239 3.73931 3.83974 4.01706 4.11045 4.24325 4.47125 4.51941 4.60260 4.78617 4.89732 4.92808 5.08124 5.17120 5.20223 5.22914 5.32757 5.34878 5.46098 5.49064 5.50978 5.65812 5.67356 5.73371 5.75576 5.80486 5.88273 5.99893 6.11218 6.18876 6.31711 6.52572 6.91876 7.03451 7.30423 7.42376 7.47759 7.49661 8.00148 8.07210 8.47466 8.54674 9.12172 9.48358 9.99032 10.70350 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.007257 B = 0.003802 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.650014 B = 7361.957716 C =10533.586602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.706 5.706 7 C 0.500 3.500 8 O -0.530 6.530 9 C 0.106 3.894 10 H 0.116 0.884 11 C 0.106 3.894 12 N -0.635 5.635 13 C 0.117 3.883 14 C 0.705 3.295 15 O -0.587 6.587 16 N -0.716 5.716 17 N -0.658 5.658 18 C 0.043 3.957 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.432 0.568 44 H 0.353 0.647 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 3.184 15.603 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.002 3.998 6 N -0.359 5.359 7 C 0.283 3.717 8 O -0.406 6.406 9 C -0.004 4.004 10 H 0.133 0.867 11 C -0.018 4.018 12 N -0.374 5.374 13 C -0.025 4.025 14 C 0.406 3.594 15 O -0.465 6.465 16 N -0.377 5.377 17 N -0.291 5.291 18 C -0.089 4.089 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.249 0.751 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.274 0.726 44 H 0.174 0.826 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.321 3.734 15.484 15.982 hybrid contribution -0.884 -0.919 -0.661 1.436 sum 0.437 2.815 14.823 15.094 Atomic orbital electron populations 1.21756 0.95206 1.02059 1.02022 1.22212 0.96819 0.97901 1.03126 1.21919 0.94087 0.93661 0.94091 0.89152 1.21431 0.93045 0.83392 1.01893 1.45782 1.06786 1.10504 1.72798 1.20715 0.82763 0.90870 0.77358 1.90750 1.55918 1.45637 1.48303 1.21807 0.86612 0.95357 0.96655 0.86664 1.22366 0.83373 1.02979 0.93112 1.47071 1.07972 1.71844 1.10501 1.21464 0.99024 0.99480 0.82486 1.15792 0.84857 0.77794 0.80996 1.90947 1.12001 1.60115 1.83469 1.44797 1.06608 1.73183 1.13161 1.60214 1.19601 1.49760 0.99515 1.21766 1.01092 0.95406 0.90671 1.19775 0.85381 0.87965 0.84242 1.90518 1.46041 1.23701 1.86523 1.41886 1.51470 1.21743 1.04868 1.19725 1.35269 1.04814 0.83142 0.87871 1.25263 0.96792 0.96360 0.99446 1.69622 1.39509 1.18625 1.26348 0.85824 0.78152 0.79539 0.80979 1.19211 1.20722 1.20764 0.92471 0.92550 0.92412 0.90981 0.91325 0.91269 0.91175 0.75090 0.89022 0.88345 0.89603 0.91660 0.91808 0.72597 0.82641 0.89650 0.93413 0.77561 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.70 37.16 0.36 -0.93 16 2 C -0.16 -1.39 5.10 -26.73 -0.14 -1.52 16 3 C 0.07 0.66 2.70 -67.71 -0.18 0.48 16 4 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 5 C 0.13 1.29 4.76 -4.05 -0.02 1.27 16 6 N -0.71 -7.02 5.39 -60.30 -0.32 -7.35 16 7 C 0.50 5.87 6.94 -10.99 -0.08 5.80 16 8 O -0.53 -8.47 16.58 5.55 0.09 -8.38 16 9 C 0.11 1.01 4.16 -68.20 -0.28 0.73 16 10 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 11 C 0.11 1.09 7.34 -2.98 -0.02 1.07 16 12 N -0.63 -7.99 3.36 -186.47 -0.63 -8.62 16 13 C 0.12 1.25 11.22 59.85 0.67 1.92 16 14 C 0.71 10.41 8.60 -88.40 -0.76 9.65 16 15 O -0.59 -10.80 17.29 5.29 0.09 -10.71 16 16 N -0.72 -8.37 5.62 -59.33 -0.33 -8.70 16 17 N -0.66 -8.08 5.32 -107.99 -0.57 -8.65 16 18 C 0.04 0.66 5.31 -4.98 -0.03 0.63 16 19 C 0.44 9.42 7.83 -10.99 -0.09 9.33 16 20 O -0.58 -14.27 15.90 5.55 0.09 -14.18 16 21 N -0.56 -13.42 5.29 -10.96 -0.06 -13.48 16 22 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 23 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -23.82 13.05 55.50 0.72 -23.10 16 26 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 6.87 -51.93 -0.36 0.20 16 33 H 0.07 0.71 6.23 -51.93 -0.32 0.39 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.84 6.61 -51.93 -0.34 0.50 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.41 3.61 8.14 -40.82 -0.33 3.28 16 38 H 0.09 1.09 7.72 -51.93 -0.40 0.68 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.97 7.52 -51.93 -0.39 0.57 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.43 4.47 8.96 -40.82 -0.37 4.10 16 44 H 0.35 4.55 7.29 -39.29 -0.29 4.26 16 45 H 0.09 1.28 6.22 -51.93 -0.32 0.96 16 46 H 0.05 0.68 6.48 -51.93 -0.34 0.34 16 47 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 48 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -35.34 396.21 -7.87 -43.21 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -7.10 Total: 17.85 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: -0.80 Total: 20.82 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.19 Total: -69.89 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: 0.27 Total: -33.27 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.34 -7.87 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714095532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.802 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds