Wall clock time and date at job start Wed Apr 1 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47574 * 2 1 4 4 H 1.09002 * 109.46943 * 55.37318 * 3 2 1 5 5 C 1.52995 * 109.47191 * 175.37752 * 3 2 1 6 6 N 1.46499 * 109.47038 * 174.99894 * 5 3 2 7 7 C 1.34776 * 120.00520 * 180.02562 * 6 5 3 8 8 O 1.21288 * 119.99427 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00332 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.48812 * 40.70283 * 9 7 6 11 11 C 1.54103 * 110.54920 * 277.99754 * 9 7 6 12 12 N 1.47388 * 103.70361 * 241.22549 * 11 9 7 13 13 C 1.46499 * 125.37962 * 180.02562 * 12 11 9 14 14 C 1.33943 * 109.21051 * 0.11667 * 12 11 9 15 15 O 1.21587 * 123.04345 * 179.90109 * 14 12 11 16 16 N 1.33950 * 113.91915 * 359.92037 * 14 12 11 17 17 N 1.46907 * 109.46657 * 295.37828 * 3 2 1 18 18 C 1.46902 * 110.99732 * 302.88316 * 17 3 2 19 19 C 1.50697 * 109.47001 * 185.63989 * 18 17 3 20 20 O 1.21294 * 120.00059 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00541 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00632 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99905 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00326 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99378 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00003 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47235 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46828 * 119.99951 * 26 24 22 29 29 H 1.48500 * 109.46902 * 239.99975 * 26 24 22 30 30 H 1.08995 * 109.47036 * 178.73145 * 1 2 3 31 31 H 1.09004 * 109.46764 * 298.73414 * 1 2 3 32 32 H 1.09000 * 109.47084 * 58.73177 * 1 2 3 33 33 H 1.09001 * 109.47395 * 239.99382 * 2 1 3 34 34 H 1.09002 * 109.47381 * 119.99927 * 2 1 3 35 35 H 1.08996 * 109.47086 * 55.00115 * 5 3 2 36 36 H 1.08994 * 109.47354 * 294.99442 * 5 3 2 37 37 H 0.97004 * 119.99825 * 359.97438 * 6 5 3 38 38 H 1.09003 * 110.55009 * 359.85903 * 11 9 7 39 39 H 1.08995 * 110.54688 * 122.66427 * 11 9 7 40 40 H 1.08999 * 109.47309 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.46851 * 300.06873 * 13 12 11 42 42 H 1.09002 * 109.46772 * 60.06184 * 13 12 11 43 43 H 0.96997 * 125.41150 * 180.02562 * 16 14 12 44 44 H 1.00895 * 111.00217 * 66.83493 * 17 3 2 45 45 H 1.08997 * 109.47172 * 305.63915 * 18 17 3 46 46 H 1.08999 * 109.47042 * 65.64308 * 18 17 3 47 47 H 0.97009 * 119.99457 * 0.02562 * 21 19 18 48 48 H 0.97004 * 119.99388 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6107 1.9797 0.8457 5 6 3.5656 1.4440 0.1162 6 7 4.0632 2.8166 -0.0036 7 6 5.3863 3.0627 0.0685 8 8 6.1651 2.1475 0.2332 9 6 5.8981 4.4747 -0.0554 10 1 5.2519 5.1638 0.4882 11 6 6.0012 4.8846 -1.5373 12 7 7.4356 5.1681 -1.7223 13 6 8.0598 5.6027 -2.9743 14 6 8.0781 4.9634 -0.5649 15 8 9.2766 5.1222 -0.4348 16 7 7.2810 4.5674 0.4361 17 7 1.6437 2.1020 -1.2514 18 6 2.1483 1.3649 -2.4177 19 6 1.8430 2.1409 -3.6729 20 8 1.2625 3.2036 -3.6029 21 7 2.2148 1.6541 -4.8734 22 6 1.9366 2.3597 -6.0154 23 1 1.4190 3.3056 -5.9531 24 6 2.3205 1.8581 -7.2530 25 7 2.9498 0.7069 -7.3288 26 14 1.9407 2.8193 -8.8091 27 1 1.2296 4.0739 -8.4548 28 1 3.2083 3.1499 -9.5084 29 1 1.0828 1.9984 -9.7009 30 1 -0.3633 -1.0274 -0.0228 31 1 -0.3633 0.4941 0.9012 32 1 -0.3633 0.5334 -0.8784 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.9912 0.8325 -0.6794 36 1 3.8567 1.0353 1.0838 37 1 3.4403 3.5485 -0.1357 38 1 5.6845 4.0660 -2.1836 39 1 5.4060 5.7773 -1.7295 40 1 9.1305 5.7360 -2.8195 41 1 7.8944 4.8485 -3.7437 42 1 7.6187 6.5478 -3.2912 43 1 7.5700 4.3731 1.3414 44 1 0.6421 2.2135 -1.2999 45 1 3.2263 1.2328 -2.3254 46 1 1.6656 0.3889 -2.4674 47 1 2.6787 0.8040 -4.9295 48 1 3.2181 0.3569 -8.1928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714095532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:12 Heat of formation + Delta-G solvation = -110.788602 kcal Electronic energy + Delta-G solvation = -30695.190311 eV Core-core repulsion = 26398.457643 eV Total energy + Delta-G solvation = -4296.732667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.40981 -40.66402 -40.05413 -38.62294 -37.38320 -35.91060 -35.21824 -35.07616 -33.25694 -32.71976 -31.03116 -29.47761 -28.34887 -27.78243 -26.04438 -25.10741 -23.79497 -21.78186 -21.65155 -21.35839 -20.54345 -19.83311 -18.87821 -18.58538 -18.26715 -17.52363 -17.07451 -16.99423 -16.51374 -16.38579 -16.18229 -15.84206 -15.68664 -15.27194 -15.25677 -15.14284 -14.83864 -14.71847 -14.55367 -14.38363 -13.98940 -13.59138 -13.49045 -13.42836 -13.27124 -13.12242 -12.99020 -12.86434 -12.68931 -12.35821 -12.27991 -12.09463 -11.80831 -11.63931 -11.57949 -11.46273 -11.34189 -10.42609 -10.28169 -10.03508 -9.96689 -9.63771 -9.30436 -8.43251 -5.91261 1.33485 1.38583 1.44368 1.57609 1.59625 1.86058 2.11169 2.18602 2.31196 2.87168 2.98850 3.25040 3.27406 3.53849 3.64710 3.78285 3.88412 4.04510 4.10942 4.20655 4.32902 4.40305 4.47561 4.50138 4.51270 4.57311 4.60619 4.66346 4.80104 4.82515 4.83787 4.87605 4.96386 5.14884 5.28583 5.40701 5.44312 5.45250 5.56994 5.91570 6.01087 6.12297 6.30665 6.44687 6.58038 6.63614 7.17211 7.20250 7.41564 7.61935 8.16119 8.74368 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.007257 B = 0.003802 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.650014 B = 7361.957716 C =10533.586602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C 0.085 3.915 4 H 0.117 0.883 5 C 0.126 3.874 6 N -0.693 5.693 7 C 0.499 3.501 8 O -0.578 6.578 9 C 0.112 3.888 10 H 0.164 0.836 11 C 0.103 3.897 12 N -0.638 5.638 13 C 0.112 3.888 14 C 0.693 3.307 15 O -0.634 6.634 16 N -0.710 5.710 17 N -0.659 5.659 18 C 0.062 3.938 19 C 0.444 3.556 20 O -0.613 6.613 21 N -0.578 5.578 22 C -0.326 4.326 23 H 0.083 0.917 24 C -0.014 4.014 25 N -0.924 5.924 26 Si 0.989 3.011 27 H -0.269 1.269 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.421 0.579 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.436 0.564 44 H 0.353 0.647 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.392 0.608 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 3.782 16.653 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C -0.026 4.026 4 H 0.135 0.865 5 C 0.001 3.999 6 N -0.345 5.345 7 C 0.284 3.716 8 O -0.457 6.457 9 C 0.003 3.997 10 H 0.181 0.819 11 C -0.020 4.020 12 N -0.376 5.376 13 C -0.029 4.029 14 C 0.394 3.606 15 O -0.516 6.516 16 N -0.371 5.371 17 N -0.292 5.292 18 C -0.070 4.070 19 C 0.231 3.769 20 O -0.499 6.499 21 N -0.215 5.215 22 C -0.455 4.455 23 H 0.101 0.899 24 C -0.214 4.214 25 N -0.566 5.566 26 Si 0.813 3.187 27 H -0.193 1.193 28 H -0.200 1.200 29 H -0.200 1.200 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.280 0.720 44 H 0.173 0.827 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.225 0.775 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.261 4.329 16.551 17.109 hybrid contribution -0.483 -1.129 -0.911 1.529 sum -0.743 3.200 15.640 15.981 Atomic orbital electron populations 1.21743 0.94865 1.02211 1.02044 1.22182 0.96993 0.97307 1.03294 1.21958 0.93283 0.94259 0.93055 0.86468 1.21462 0.93566 0.83169 1.01694 1.45727 1.06416 1.10820 1.71572 1.21087 0.82840 0.91271 0.76431 1.90738 1.57076 1.47212 1.50678 1.22061 0.86028 0.94902 0.96740 0.81860 1.22558 0.82393 1.03800 0.93252 1.47259 1.08927 1.71163 1.10295 1.21595 0.98680 1.00722 0.81903 1.16102 0.84574 0.77940 0.82023 1.90900 1.14079 1.62227 1.84362 1.44785 1.07283 1.72136 1.12858 1.60181 1.19530 1.49934 0.99586 1.21511 1.01583 0.95103 0.88830 1.20801 0.83229 0.87606 0.85241 1.90491 1.46883 1.25235 1.87252 1.41985 1.52437 1.21871 1.05252 1.19692 1.36303 1.04776 0.84769 0.89903 1.25996 0.96378 0.97169 1.01826 1.69693 1.40108 1.19604 1.27153 0.84918 0.78123 0.78191 0.77446 1.19332 1.20003 1.20046 0.92265 0.91014 0.93933 0.92430 0.89617 0.93397 0.90116 0.74042 0.90770 0.85120 0.90710 0.91610 0.89259 0.72044 0.82688 0.89158 0.91993 0.77469 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.70 71.98 0.70 -1.47 16 2 C -0.16 -2.31 5.10 30.59 0.16 -2.15 16 3 C 0.08 1.29 2.70 44.91 0.12 1.41 16 4 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 5 C 0.13 2.28 4.76 86.38 0.41 2.69 16 6 N -0.69 -12.18 5.39 -463.08 -2.50 -14.68 16 7 C 0.50 10.95 6.94 87.66 0.61 11.56 16 8 O -0.58 -18.21 16.58 -3.05 -0.05 -18.26 16 9 C 0.11 1.89 4.16 44.51 0.19 2.07 16 10 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 11 C 0.10 1.95 7.34 86.58 0.64 2.58 16 12 N -0.64 -15.62 3.36 -862.58 -2.90 -18.53 16 13 C 0.11 2.36 11.22 127.77 1.43 3.79 16 14 C 0.69 20.42 8.60 179.57 1.55 21.97 16 15 O -0.63 -23.95 17.29 -3.99 -0.07 -24.02 16 16 N -0.71 -15.91 5.62 -460.34 -2.59 -18.49 16 17 N -0.66 -14.78 5.32 -495.56 -2.64 -17.41 16 18 C 0.06 1.82 5.31 85.56 0.45 2.27 16 19 C 0.44 18.87 7.83 87.66 0.69 19.55 16 20 O -0.61 -29.86 15.90 -3.07 -0.05 -29.91 16 21 N -0.58 -27.88 5.29 -306.99 -1.62 -29.50 16 22 C -0.33 -17.54 9.68 84.04 0.81 -16.73 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 26 Si 0.99 41.54 29.55 68.60 2.03 43.56 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.04 0.74 6.87 -2.39 -0.02 0.72 16 33 H 0.06 1.03 6.23 -2.39 -0.01 1.01 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.11 6.61 -2.39 -0.02 1.09 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.42 6.04 8.14 -92.71 -0.75 5.29 16 38 H 0.07 1.69 7.72 -2.39 -0.02 1.67 16 39 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.73 7.52 -2.39 -0.02 1.71 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.44 8.74 8.96 -92.71 -0.83 7.90 16 44 H 0.35 8.33 7.29 -89.70 -0.65 7.68 16 45 H 0.09 2.62 6.22 -2.39 -0.01 2.61 16 46 H 0.06 1.68 6.48 -2.39 -0.02 1.66 16 47 H 0.39 18.51 7.90 -92.70 -0.73 17.77 16 48 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -78.79 396.21 -3.81 -82.60 By element: Atomic # 1 Polarization: 48.04 SS G_CDS: -1.93 Total: 46.11 kcal Atomic # 6 Polarization: 39.06 SS G_CDS: 8.22 Total: 47.28 kcal Atomic # 7 Polarization: -135.40 SS G_CDS: -11.96 Total: -147.36 kcal Atomic # 8 Polarization: -72.03 SS G_CDS: -0.17 Total: -72.19 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -78.79 -3.81 -82.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714095532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.184 kcal (2) G-P(sol) polarization free energy of solvation -78.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds