Wall clock time and date at job start Wed Apr 1 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47483 * 2 1 4 4 C 1.53003 * 109.47217 * 119.99979 * 2 1 3 5 5 C 1.52997 * 109.46992 * 64.99635 * 4 2 1 6 6 H 1.09001 * 109.47375 * 305.00364 * 5 4 2 7 7 C 1.53006 * 109.47164 * 185.00330 * 5 4 2 8 8 N 1.46496 * 109.47070 * 185.00131 * 7 5 4 9 9 C 1.36943 * 119.99999 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99492 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99803 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47602 * 59.99841 * 13 11 9 15 15 H 1.48501 * 109.46922 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47274 * 299.99571 * 13 11 9 17 17 N 1.46504 * 109.47417 * 65.00416 * 5 4 2 18 18 C 1.34774 * 119.99618 * 275.00242 * 17 5 4 19 19 O 1.21555 * 120.00288 * 359.97438 * 18 17 5 20 20 C 1.47894 * 120.00030 * 179.97438 * 18 17 5 21 21 C 1.40601 * 119.72369 * 359.72532 * 20 18 17 22 22 C 1.35851 * 120.94790 * 179.75211 * 21 20 18 23 23 C 1.40491 * 119.87548 * 0.51501 * 22 21 20 24 24 C 1.40485 * 121.83350 * 179.74150 * 23 22 21 25 25 N 1.31216 * 119.94416 * 180.02562 * 24 23 22 26 26 C 1.32556 * 122.79747 * 359.97438 * 25 24 23 27 27 C 1.36222 * 121.84882 * 359.97438 * 26 25 24 28 28 C 1.40754 * 118.67801 * 0.02562 * 27 26 25 29 29 C 1.38527 * 119.72910 * 179.97438 * 20 18 17 30 30 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.46885 * 59.99858 * 1 2 3 33 33 H 1.09002 * 109.46944 * 239.99773 * 2 1 3 34 34 H 1.09004 * 109.47493 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47176 * 299.99964 * 3 2 1 36 36 H 1.08999 * 109.47475 * 59.99504 * 3 2 1 37 37 H 1.08998 * 109.46717 * 304.99993 * 4 2 1 38 38 H 1.09002 * 109.47471 * 184.99893 * 4 2 1 39 39 H 1.09004 * 109.46579 * 304.99685 * 7 5 4 40 40 H 1.08992 * 109.47046 * 64.99868 * 7 5 4 41 41 H 0.97001 * 120.00404 * 359.97438 * 8 7 5 42 42 H 0.96994 * 119.99748 * 180.02562 * 12 11 9 43 43 H 0.96990 * 120.00057 * 94.99539 * 17 5 4 44 44 H 1.08003 * 119.52560 * 359.97438 * 21 20 18 45 45 H 1.07999 * 120.06251 * 180.27962 * 22 21 20 46 46 H 1.08002 * 120.03111 * 0.05342 * 24 23 22 47 47 H 1.07997 * 119.07404 * 179.97438 * 26 25 24 48 48 H 1.08008 * 120.65891 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.36581 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 0.5562 -2.2706 1.0527 7 6 2.0353 -2.8888 2.4919 8 7 1.7568 -4.3233 2.3876 9 6 2.0357 -5.1533 3.4405 10 1 2.4614 -4.7504 4.3476 11 6 1.7723 -6.5126 3.3414 12 7 1.2540 -7.0037 2.2357 13 14 2.1522 -7.6446 4.7779 14 1 1.3736 -7.2140 5.9669 15 1 1.7811 -9.0377 4.4219 16 1 3.6033 -7.5820 5.0873 17 7 2.3146 -2.8422 0.0627 18 6 1.7814 -2.7779 -1.1734 19 8 0.7365 -2.1838 -1.3545 20 6 2.4675 -3.4303 -2.3096 21 6 3.6788 -4.1110 -2.0947 22 6 4.3274 -4.7232 -3.1194 23 6 3.7922 -4.6709 -4.4173 24 6 4.4311 -5.2846 -5.5076 25 7 3.8984 -5.2120 -6.7045 26 6 2.7612 -4.5755 -6.9469 27 6 2.0635 -3.9488 -5.9589 28 6 2.5721 -3.9828 -4.6469 29 6 1.9141 -3.3611 -3.5777 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6054 -0.2617 2.1369 38 1 3.1264 -0.6444 1.2952 39 1 3.0996 -2.7375 2.6721 40 1 1.4633 -2.4668 3.3182 41 1 1.3748 -4.6852 1.5727 42 1 1.0696 -7.9534 2.1667 43 1 3.1482 -3.3164 0.2072 44 1 4.0978 -4.1508 -1.1001 45 1 5.2548 -5.2460 -2.9373 46 1 5.3598 -5.8161 -5.3607 47 1 2.3771 -4.5531 -7.9560 48 1 1.1389 -3.4353 -6.1782 49 1 0.9858 -2.8337 -3.7402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714932547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:28 Heat of formation + Delta-G solvation = 18.840176 kcal Electronic energy + Delta-G solvation = -29638.116427 eV Core-core repulsion = 25757.854148 eV Total energy + Delta-G solvation = -3880.262279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05027 -39.91924 -37.48859 -36.43995 -35.00108 -33.60974 -33.12485 -31.81051 -30.85020 -29.77104 -29.09466 -26.91513 -25.62887 -25.05086 -23.92819 -22.93408 -22.43598 -21.25910 -20.42778 -19.71620 -18.38976 -17.76226 -17.17504 -16.72701 -16.25825 -15.80742 -15.59324 -15.10344 -14.73945 -14.51070 -14.13641 -14.05728 -13.84927 -13.77914 -13.70759 -13.43491 -13.05837 -12.93275 -12.92354 -12.56668 -12.26354 -12.05756 -12.02145 -11.92709 -11.53608 -11.25867 -11.06674 -11.00417 -10.83582 -10.57123 -10.41315 -10.29374 -10.28001 -10.04437 -9.79835 -9.75711 -9.56543 -9.22280 -8.95616 -8.66589 -8.25396 -7.00894 -5.81964 -3.12239 0.07871 0.55779 1.70164 2.49648 3.32666 3.39890 3.43486 3.44946 3.45797 3.96369 4.20191 4.35002 4.51170 4.55207 4.59794 4.75291 4.86656 4.92333 5.02025 5.07639 5.14951 5.15823 5.38820 5.48728 5.51487 5.52079 5.59119 5.61696 5.68283 5.77201 5.84353 5.87681 5.93253 6.00729 6.07499 6.09011 6.13906 6.16026 6.18268 6.26576 6.40404 6.42414 6.44813 6.57572 6.61715 6.64585 6.81173 6.90018 7.63676 7.75394 7.78468 8.35533 8.44197 9.47510 10.02836 10.38230 11.40000 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.003676 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.907726 B = 7614.957829 C =10472.249776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.093 0.907 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.701 5.701 18 C 0.554 3.446 19 O -0.530 6.530 20 C -0.103 4.103 21 C -0.087 4.087 22 C -0.092 4.092 23 C -0.098 4.098 24 C 0.143 3.857 25 N -0.487 5.487 26 C 0.068 3.932 27 C -0.144 4.144 28 C -0.035 4.035 29 C -0.048 4.048 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.403 0.597 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.165 0.835 47 H 0.153 0.847 48 H 0.140 0.860 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 11.132 -13.879 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.161 4.161 5 C 0.031 3.969 6 H 0.111 0.889 7 C 0.015 3.985 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.352 5.352 18 C 0.341 3.659 19 O -0.409 6.409 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.111 4.111 23 C -0.100 4.100 24 C -0.028 4.028 25 N -0.195 5.195 26 C -0.075 4.075 27 C -0.164 4.164 28 C -0.040 4.040 29 C -0.067 4.067 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.239 0.761 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.182 0.818 47 H 0.170 0.830 48 H 0.158 0.842 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.123 11.139 -14.611 19.074 hybrid contribution 0.019 -0.722 1.424 1.597 sum 5.142 10.418 -13.187 17.575 Atomic orbital electron populations 1.21833 0.94917 1.03095 0.99682 1.21142 0.96606 0.94835 0.98555 1.21867 1.00326 0.97000 1.01157 1.22024 1.00886 0.94745 0.98451 1.21425 0.98531 0.91075 0.85841 0.88936 1.20974 0.97869 0.86521 0.93095 1.42343 1.76655 1.00874 1.17746 1.19160 1.35222 0.88911 0.94319 0.91211 1.24741 1.01582 0.96927 0.97379 1.69654 1.49195 1.12889 1.26052 0.86279 0.77935 0.80119 0.81874 1.21262 1.21690 1.21253 1.45900 1.27206 1.54965 1.07081 1.18138 0.84892 0.79957 0.82960 1.90758 1.22648 1.43032 1.84470 1.20145 0.96047 1.00276 0.94253 1.21084 0.93897 0.95660 0.99931 1.20884 1.00306 0.98992 0.90960 1.19153 0.95624 0.99449 0.95770 1.23247 0.98379 0.94393 0.86821 1.67381 1.11736 1.16426 1.23951 1.22159 0.91103 0.94520 0.99673 1.21981 1.01259 1.00790 0.92350 1.18133 0.94363 0.97307 0.94166 1.21396 0.99009 0.95937 0.90377 0.90521 0.94264 0.93854 0.90758 0.93342 0.93266 0.93088 0.91037 0.91941 0.95837 0.94834 0.77990 0.93409 0.76101 0.84785 0.84312 0.81821 0.82992 0.84236 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.03 37.16 0.30 -1.61 16 2 C -0.09 -1.22 2.38 -90.62 -0.22 -1.43 16 3 C -0.15 -1.63 9.19 37.15 0.34 -1.29 16 4 C -0.12 -1.60 4.36 -26.73 -0.12 -1.72 16 5 C 0.14 2.14 2.33 -67.93 -0.16 1.98 16 6 H 0.09 1.66 5.92 -51.93 -0.31 1.35 16 7 C 0.14 2.67 5.82 -4.04 -0.02 2.64 16 8 N -0.73 -17.48 5.43 -59.91 -0.33 -17.81 16 9 C -0.25 -6.58 9.99 -15.06 -0.15 -6.73 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 13 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 17 N -0.70 -10.52 4.42 -54.73 -0.24 -10.76 16 18 C 0.55 8.52 6.32 -12.31 -0.08 8.44 16 19 O -0.53 -9.05 11.26 5.32 0.06 -8.99 16 20 C -0.10 -1.40 5.87 -104.95 -0.62 -2.02 16 21 C -0.09 -1.05 9.44 -39.55 -0.37 -1.42 16 22 C -0.09 -0.97 9.77 -39.59 -0.39 -1.36 16 23 C -0.10 -1.11 5.75 -106.78 -0.61 -1.73 16 24 C 0.14 1.49 11.04 -16.97 -0.19 1.30 16 25 N -0.49 -5.60 10.29 -13.15 -0.14 -5.73 16 26 C 0.07 0.69 11.07 -17.96 -0.20 0.49 16 27 C -0.14 -1.46 9.88 -39.36 -0.39 -1.85 16 28 C -0.03 -0.41 5.74 -106.83 -0.61 -1.03 16 29 C -0.05 -0.62 9.38 -38.78 -0.36 -0.98 16 30 H 0.08 1.23 4.75 -51.93 -0.25 0.98 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.09 5.19 -51.93 -0.27 0.82 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.39 9.89 7.33 -40.82 -0.30 9.59 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.40 5.75 6.58 -40.82 -0.27 5.49 16 44 H 0.13 1.47 6.34 -52.48 -0.33 1.14 16 45 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 49 H 0.15 1.78 7.62 -52.49 -0.40 1.38 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -31.74 392.59 -10.13 -41.87 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -7.17 Total: 14.05 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.94 Total: -8.68 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.02 Total: -60.99 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.06 Total: -8.99 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.74 -10.13 -41.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714932547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.708 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds