Wall clock time and date at job start Wed Apr 1 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47483 * 2 1 4 4 C 1.53003 * 109.47217 * 119.99979 * 2 1 3 5 5 C 1.52997 * 109.46992 * 64.99635 * 4 2 1 6 6 H 1.09001 * 109.47375 * 305.00364 * 5 4 2 7 7 C 1.53006 * 109.47164 * 185.00330 * 5 4 2 8 8 N 1.46496 * 109.47070 * 185.00131 * 7 5 4 9 9 C 1.36943 * 119.99999 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99492 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99803 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47602 * 59.99841 * 13 11 9 15 15 H 1.48501 * 109.46922 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47274 * 299.99571 * 13 11 9 17 17 N 1.46504 * 109.47417 * 65.00416 * 5 4 2 18 18 C 1.34774 * 119.99618 * 275.00242 * 17 5 4 19 19 O 1.21555 * 120.00288 * 359.97438 * 18 17 5 20 20 C 1.47894 * 120.00030 * 179.97438 * 18 17 5 21 21 C 1.40601 * 119.72369 * 359.72532 * 20 18 17 22 22 C 1.35851 * 120.94790 * 179.75211 * 21 20 18 23 23 C 1.40491 * 119.87548 * 0.51501 * 22 21 20 24 24 C 1.40485 * 121.83350 * 179.74150 * 23 22 21 25 25 N 1.31216 * 119.94416 * 180.02562 * 24 23 22 26 26 C 1.32556 * 122.79747 * 359.97438 * 25 24 23 27 27 C 1.36222 * 121.84882 * 359.97438 * 26 25 24 28 28 C 1.40754 * 118.67801 * 0.02562 * 27 26 25 29 29 C 1.38527 * 119.72910 * 179.97438 * 20 18 17 30 30 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.46885 * 59.99858 * 1 2 3 33 33 H 1.09002 * 109.46944 * 239.99773 * 2 1 3 34 34 H 1.09004 * 109.47493 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47176 * 299.99964 * 3 2 1 36 36 H 1.08999 * 109.47475 * 59.99504 * 3 2 1 37 37 H 1.08998 * 109.46717 * 304.99993 * 4 2 1 38 38 H 1.09002 * 109.47471 * 184.99893 * 4 2 1 39 39 H 1.09004 * 109.46579 * 304.99685 * 7 5 4 40 40 H 1.08992 * 109.47046 * 64.99868 * 7 5 4 41 41 H 0.97001 * 120.00404 * 359.97438 * 8 7 5 42 42 H 0.96994 * 119.99748 * 180.02562 * 12 11 9 43 43 H 0.96990 * 120.00057 * 94.99539 * 17 5 4 44 44 H 1.08003 * 119.52560 * 359.97438 * 21 20 18 45 45 H 1.07999 * 120.06251 * 180.27962 * 22 21 20 46 46 H 1.08002 * 120.03111 * 0.05342 * 24 23 22 47 47 H 1.07997 * 119.07404 * 179.97438 * 26 25 24 48 48 H 1.08008 * 120.65891 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.36581 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 0.5562 -2.2706 1.0527 7 6 2.0353 -2.8888 2.4919 8 7 1.7568 -4.3233 2.3876 9 6 2.0357 -5.1533 3.4405 10 1 2.4614 -4.7504 4.3476 11 6 1.7723 -6.5126 3.3414 12 7 1.2540 -7.0037 2.2357 13 14 2.1522 -7.6446 4.7779 14 1 1.3736 -7.2140 5.9669 15 1 1.7811 -9.0377 4.4219 16 1 3.6033 -7.5820 5.0873 17 7 2.3146 -2.8422 0.0627 18 6 1.7814 -2.7779 -1.1734 19 8 0.7365 -2.1838 -1.3545 20 6 2.4675 -3.4303 -2.3096 21 6 3.6788 -4.1110 -2.0947 22 6 4.3274 -4.7232 -3.1194 23 6 3.7922 -4.6709 -4.4173 24 6 4.4311 -5.2846 -5.5076 25 7 3.8984 -5.2120 -6.7045 26 6 2.7612 -4.5755 -6.9469 27 6 2.0635 -3.9488 -5.9589 28 6 2.5721 -3.9828 -4.6469 29 6 1.9141 -3.3611 -3.5777 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6054 -0.2617 2.1369 38 1 3.1264 -0.6444 1.2952 39 1 3.0996 -2.7375 2.6721 40 1 1.4633 -2.4668 3.3182 41 1 1.3748 -4.6852 1.5727 42 1 1.0696 -7.9534 2.1667 43 1 3.1482 -3.3164 0.2072 44 1 4.0978 -4.1508 -1.1001 45 1 5.2548 -5.2460 -2.9373 46 1 5.3598 -5.8161 -5.3607 47 1 2.3771 -4.5531 -7.9560 48 1 1.1389 -3.4353 -6.1782 49 1 0.9858 -2.8337 -3.7402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714932547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:26 Heat of formation + Delta-G solvation = 0.452008 kcal Electronic energy + Delta-G solvation = -29638.913798 eV Core-core repulsion = 25757.854148 eV Total energy + Delta-G solvation = -3881.059649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.96403 -41.03968 -38.51175 -37.60385 -36.43554 -35.10098 -34.00954 -33.21220 -32.22159 -30.62597 -30.46404 -27.95011 -27.17940 -26.08714 -24.78262 -24.60726 -23.37436 -22.48409 -21.65447 -20.81212 -19.54623 -19.04882 -18.59262 -17.70977 -17.27107 -16.97436 -16.86665 -16.43407 -15.91138 -15.53459 -15.44987 -15.27651 -15.06049 -14.83784 -14.69663 -14.61369 -14.50535 -14.30533 -13.82135 -13.68452 -13.45555 -13.18981 -13.06703 -12.96516 -12.93273 -12.74977 -12.55089 -12.34875 -12.14021 -12.07845 -11.87787 -11.63887 -11.39304 -11.25980 -11.23975 -10.97236 -10.86164 -10.50912 -10.18719 -9.88017 -9.10354 -8.99871 -7.92903 -5.22432 -0.80718 -0.32722 0.82852 1.49176 1.51278 1.52643 1.57418 2.16681 2.39853 2.57071 3.07244 3.41203 3.48340 3.52860 3.56060 3.70010 3.76602 3.85421 3.99407 4.01266 4.09032 4.11005 4.24668 4.29032 4.38906 4.42661 4.60531 4.66992 4.68516 4.74641 4.81415 4.88466 4.90292 4.91932 4.94945 5.00259 5.04218 5.10136 5.16550 5.22317 5.23886 5.28715 5.39550 5.51991 5.57793 5.58654 5.63819 5.67199 5.72815 6.27211 6.58335 6.95705 7.24543 7.35101 8.08704 8.32453 9.29573 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.003676 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.907726 B = 7614.957829 C =10472.249776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.113 4.113 5 C 0.146 3.854 6 H 0.067 0.933 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.244 4.244 10 H 0.078 0.922 11 C -0.070 4.070 12 N -0.967 5.967 13 Si 0.971 3.029 14 H -0.282 1.282 15 H -0.299 1.299 16 H -0.275 1.275 17 N -0.698 5.698 18 C 0.550 3.450 19 O -0.553 6.553 20 C -0.119 4.119 21 C -0.103 4.103 22 C -0.080 4.080 23 C -0.110 4.110 24 C 0.145 3.855 25 N -0.506 5.506 26 C 0.066 3.934 27 C -0.150 4.150 28 C -0.050 4.050 29 C -0.056 4.056 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.406 0.594 44 H 0.140 0.860 45 H 0.171 0.829 46 H 0.195 0.805 47 H 0.179 0.821 48 H 0.159 0.841 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 11.760 -13.913 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.198 4.198 4 C -0.152 4.152 5 C 0.041 3.959 6 H 0.085 0.915 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.376 4.376 10 H 0.096 0.904 11 C -0.263 4.263 12 N -0.617 5.617 13 Si 0.800 3.200 14 H -0.208 1.208 15 H -0.226 1.226 16 H -0.200 1.200 17 N -0.349 5.349 18 C 0.339 3.661 19 O -0.434 6.434 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.027 4.027 25 N -0.214 5.214 26 C -0.077 4.077 27 C -0.170 4.170 28 C -0.055 4.055 29 C -0.075 4.075 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.243 0.757 44 H 0.158 0.842 45 H 0.188 0.812 46 H 0.212 0.788 47 H 0.196 0.804 48 H 0.177 0.823 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.887 11.813 -14.624 20.021 hybrid contribution -0.532 -0.871 1.361 1.701 sum 6.355 10.942 -13.263 18.331 Atomic orbital electron populations 1.21763 0.95704 1.01447 1.00151 1.21075 0.95887 0.96157 0.97724 1.21807 1.00880 0.95295 1.01812 1.21963 1.01785 0.92503 0.98956 1.21227 0.97174 0.92652 0.84809 0.91455 1.21124 0.98590 0.83881 0.94658 1.42512 1.76514 1.02854 1.16656 1.19582 1.33588 0.89431 0.95011 0.90377 1.25505 1.02494 0.98545 0.99758 1.69820 1.51245 1.12572 1.28086 0.85260 0.78164 0.77609 0.78978 1.20791 1.22590 1.20041 1.45842 1.27193 1.55014 1.06884 1.18453 0.84664 0.79622 0.83411 1.90743 1.23666 1.44112 1.84854 1.20113 0.97042 1.01383 0.93795 1.21179 0.93729 0.96444 1.00806 1.21227 1.00878 0.97743 0.90126 1.19409 0.95643 0.99647 0.96567 1.23736 0.99078 0.93769 0.86090 1.67460 1.12436 1.17050 1.24465 1.22618 0.90624 0.93587 1.00844 1.22223 1.02098 1.01008 0.91628 1.18363 0.94922 0.97532 0.94675 1.21430 0.99109 0.96336 0.90592 0.93206 0.93124 0.93956 0.92467 0.92411 0.93014 0.92056 0.89921 0.90510 0.94227 0.94579 0.79381 0.94194 0.75679 0.84201 0.81156 0.78830 0.80432 0.82300 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.03 71.98 0.58 -3.14 16 2 C -0.09 -2.30 2.38 -10.79 -0.03 -2.32 16 3 C -0.14 -2.87 9.19 71.98 0.66 -2.21 16 4 C -0.11 -2.83 4.36 30.59 0.13 -2.70 16 5 C 0.15 4.62 2.33 44.99 0.10 4.73 16 6 H 0.07 2.51 5.92 -2.39 -0.01 2.49 16 7 C 0.14 5.27 5.82 86.38 0.50 5.78 16 8 N -0.74 -35.68 5.43 -343.45 -1.87 -37.54 16 9 C -0.24 -13.03 9.99 84.03 0.84 -12.19 16 10 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 12 N -0.97 -57.99 13.06 21.65 0.28 -57.71 16 13 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 N -0.70 -21.38 4.42 -445.34 -1.97 -23.35 16 18 C 0.55 17.64 6.32 86.80 0.55 18.18 16 19 O -0.55 -19.88 11.26 -3.89 -0.04 -19.93 16 20 C -0.12 -3.35 5.87 -20.07 -0.12 -3.46 16 21 C -0.10 -2.46 9.44 22.29 0.21 -2.25 16 22 C -0.08 -1.60 9.77 22.26 0.22 -1.38 16 23 C -0.11 -2.39 5.75 -21.26 -0.12 -2.51 16 24 C 0.14 2.72 11.04 85.33 0.94 3.66 16 25 N -0.51 -10.74 10.29 -195.50 -2.01 -12.75 16 26 C 0.07 1.22 11.07 84.11 0.93 2.15 16 27 C -0.15 -2.92 9.88 22.42 0.22 -2.70 16 28 C -0.05 -1.18 5.74 -21.29 -0.12 -1.30 16 29 C -0.06 -1.47 9.38 22.79 0.21 -1.25 16 30 H 0.05 1.67 4.75 -2.39 -0.01 1.65 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.68 5.19 -2.39 -0.01 1.67 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.37 19.65 7.33 -92.71 -0.68 18.97 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.41 11.72 6.58 -92.72 -0.61 11.11 16 44 H 0.14 3.06 6.34 -2.91 -0.02 3.04 16 45 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 47 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 48 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 49 H 0.14 3.69 7.62 -2.91 -0.02 3.67 16 Total: -1.00 -68.72 392.59 2.29 -66.42 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.31 Total: 44.30 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 6.18 Total: -6.38 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -5.56 Total: -131.36 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.04 Total: -19.93 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.72 2.29 -66.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714932547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.875 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds