Wall clock time and date at job start Wed Apr 1 2020 00:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47473 * 274.20641 * 3 2 1 5 5 C 1.34780 * 119.99696 * 275.31608 * 4 3 2 6 6 O 1.21506 * 120.00168 * 184.46997 * 5 4 3 7 7 C 1.48170 * 120.00167 * 4.46611 * 5 4 3 8 8 N 1.32749 * 119.72443 * 285.82842 * 7 5 4 9 9 C 1.31488 * 121.64538 * 179.97438 * 8 7 5 10 10 C 1.38609 * 120.90280 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.32576 * 179.97438 * 10 9 8 12 12 C 1.38585 * 119.34591 * 359.97283 * 10 9 8 13 13 C 1.38636 * 118.49122 * 359.75577 * 12 10 9 14 14 C 1.50696 * 120.46954 * 180.26553 * 13 12 10 15 15 C 1.46497 * 120.00066 * 95.31357 * 4 3 2 16 16 C 1.53075 * 109.45188 * 299.78683 * 15 4 3 17 17 C 1.53192 * 109.29215 * 181.24084 * 16 15 4 18 18 N 1.46919 * 108.89792 * 305.58304 * 17 16 15 19 19 C 1.36932 * 120.63194 * 233.51365 * 18 17 16 20 20 H 1.08007 * 120.00216 * 143.90338 * 19 18 17 21 21 C 1.38815 * 120.00387 * 323.90838 * 19 18 17 22 22 N 1.31628 * 119.99268 * 1.64046 * 21 19 18 23 23 Si 1.86799 * 120.00508 * 181.64276 * 21 19 18 24 24 H 1.48496 * 109.47109 * 89.99967 * 23 21 19 25 25 H 1.48497 * 109.46934 * 209.99921 * 23 21 19 26 26 H 1.48498 * 109.46763 * 329.99630 * 23 21 19 27 27 C 1.46924 * 118.73903 * 53.53584 * 18 17 16 28 28 C 1.53036 * 109.46053 * 60.00372 * 15 4 3 29 29 H 4.40641 * 5.51405 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47129 * 154.20375 * 3 2 1 31 31 H 1.09008 * 109.47515 * 34.20599 * 3 2 1 32 32 H 1.08004 * 119.55132 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46504 * 90.00142 * 11 10 9 34 34 H 1.08999 * 109.46899 * 209.99965 * 11 10 9 35 35 H 1.08993 * 109.47290 * 330.00267 * 11 10 9 36 36 H 1.08005 * 120.75363 * 179.97438 * 12 10 9 37 37 H 1.08998 * 109.47622 * 274.90254 * 14 13 12 38 38 H 1.09002 * 109.47230 * 34.90284 * 14 13 12 39 39 H 1.09005 * 109.47235 * 154.89863 * 14 13 12 40 40 H 1.09007 * 109.45590 * 179.97438 * 15 4 3 41 41 H 1.09003 * 109.38554 * 61.37500 * 16 15 4 42 42 H 1.09002 * 109.62716 * 301.26343 * 16 15 4 43 43 H 1.09003 * 109.58599 * 185.71908 * 17 16 15 44 44 H 1.09001 * 109.58473 * 65.44510 * 17 16 15 45 45 H 0.97002 * 119.99379 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.58679 * 66.17944 * 27 18 17 47 47 H 1.09004 * 109.58771 * 186.46080 * 27 18 17 48 48 H 1.08994 * 109.49902 * 58.65891 * 28 15 4 49 49 H 1.09003 * 109.49721 * 298.56175 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.1004 1.3775 5 6 3.2566 1.0095 2.1322 6 8 3.7376 0.9371 3.2457 7 6 2.8044 2.3180 1.6042 8 7 3.5244 2.9381 0.6773 9 6 3.1583 4.0999 0.1821 10 6 1.9986 4.7242 0.6140 11 6 1.5916 6.0559 0.0381 12 6 1.2170 4.1115 1.5806 13 6 1.6246 2.8843 2.0805 14 6 0.8054 2.1758 3.1283 15 6 3.4899 -1.4079 1.9345 16 6 2.2622 -2.3219 1.9134 17 6 2.6299 -3.6775 2.5250 18 7 3.7994 -4.2169 1.8180 19 6 3.7685 -5.4742 1.2763 20 1 4.2758 -5.6730 0.3437 21 6 3.0853 -6.4932 1.9256 22 7 2.4400 -6.2434 3.0454 23 14 3.0815 -8.2189 1.2104 24 1 4.2335 -8.9823 1.7536 25 1 1.8162 -8.9040 1.5775 26 1 3.1917 -8.1419 -0.2685 27 6 5.0030 -3.3820 1.7038 28 6 4.6101 -2.0308 1.0982 29 1 -1.0500 0.0002 0.0000 30 1 3.0088 0.9261 -0.4472 31 1 3.0097 -0.8491 -0.5778 32 1 3.7701 4.5746 -0.5708 33 1 0.9607 5.8960 -0.8363 34 1 1.0378 6.6217 0.7872 35 1 2.4819 6.6131 -0.2533 36 1 0.3091 4.5778 1.9339 37 1 1.0796 2.5464 4.1160 38 1 -0.2534 2.3642 2.9506 39 1 0.9974 1.1040 3.0763 40 1 3.8302 -1.2842 2.9627 41 1 1.9348 -2.4643 0.8835 42 1 1.4577 -1.8679 2.4920 43 1 1.7906 -4.3651 2.4207 44 1 2.8681 -3.5494 3.5809 45 1 1.9622 -6.9554 3.4989 46 1 5.4356 -3.2274 2.6923 47 1 5.7305 -3.8758 1.0597 48 1 5.4749 -1.3675 1.0968 49 1 4.2620 -2.1778 0.0758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724050285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:43 Heat of formation + Delta-G solvation = 77.507262 kcal Electronic energy + Delta-G solvation = -30367.603552 eV Core-core repulsion = 26489.885269 eV Total energy + Delta-G solvation = -3877.718283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.06113 -39.47099 -37.38377 -35.61262 -33.96082 -33.88871 -33.04364 -32.04077 -30.22402 -29.59730 -28.03856 -27.69624 -27.09413 -25.14494 -23.84798 -22.42585 -22.12870 -21.41473 -20.01005 -19.30781 -18.21249 -17.41421 -17.10274 -16.76574 -16.47592 -15.25658 -14.98913 -14.74628 -14.70098 -14.62937 -13.87961 -13.70345 -13.62307 -13.51307 -13.42927 -13.32401 -13.15323 -12.93721 -12.85228 -12.66417 -12.64002 -12.51839 -12.31526 -11.84509 -11.48954 -11.14275 -10.89494 -10.77992 -10.51931 -10.37706 -10.22792 -10.12502 -10.06609 -10.02627 -9.84072 -9.81679 -9.65348 -9.43303 -8.99663 -8.58214 -8.40031 -6.53687 -5.78330 -3.31590 0.64811 0.97702 2.47244 2.55109 2.88865 3.25333 3.37707 3.43490 3.44160 3.44954 4.14699 4.33034 4.39446 4.43817 4.48457 4.61100 4.68455 4.84518 5.07916 5.16279 5.19507 5.25935 5.36840 5.41664 5.44074 5.44763 5.48041 5.55563 5.57212 5.66036 5.85088 5.86994 5.88614 5.93822 5.95615 6.11950 6.24601 6.34986 6.36484 6.54264 6.60343 6.67484 6.81897 6.89139 6.98980 7.39490 7.46238 7.60045 7.64269 7.77891 7.80098 8.14552 8.53349 9.25182 9.83771 10.44618 11.28911 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.002736 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.759803 B =10229.776958 C =10379.635714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.199 4.199 3 C 0.214 3.786 4 N -0.587 5.587 5 C 0.581 3.419 6 O -0.523 6.523 7 C 0.092 3.908 8 N -0.452 5.452 9 C 0.093 3.907 10 C -0.124 4.124 11 C -0.110 4.110 12 C -0.080 4.080 13 C -0.086 4.086 14 C -0.115 4.115 15 C 0.144 3.856 16 C -0.143 4.143 17 C 0.173 3.827 18 N -0.593 5.593 19 C -0.254 4.254 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.148 3.852 28 C -0.139 4.139 29 H 0.215 0.785 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.018 0.982 45 H 0.255 0.745 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 23.403 -6.743 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.200 4.200 3 C 0.091 3.909 4 N -0.317 5.317 5 C 0.366 3.634 6 O -0.398 6.398 7 C -0.047 4.047 8 N -0.162 5.162 9 C -0.067 4.067 10 C -0.126 4.126 11 C -0.167 4.167 12 C -0.106 4.106 13 C -0.089 4.089 14 C -0.173 4.173 15 C 0.043 3.957 16 C -0.183 4.183 17 C 0.047 3.953 18 N -0.316 5.316 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.021 3.979 28 C -0.179 4.179 29 H 0.232 0.768 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.177 0.823 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.089 22.777 -6.306 23.985 hybrid contribution -1.087 -0.420 -0.137 1.173 sum -5.176 22.357 -6.443 23.836 Atomic orbital electron populations 1.24827 0.95776 1.01352 0.98815 1.23525 0.94854 1.00197 1.01415 1.18460 0.83781 1.04475 0.84172 1.48202 1.63343 1.07469 1.12717 1.17909 0.77719 0.82971 0.84760 1.90802 1.43801 1.85677 1.19548 1.20970 0.92661 0.96012 0.95063 1.67625 1.30923 1.09371 1.08246 1.22683 0.94493 0.91034 0.98459 1.21081 0.96138 0.98167 0.97257 1.20743 1.02266 0.92590 1.01146 1.21323 0.99683 0.93848 0.95733 1.20765 0.94958 0.95287 0.97873 1.20812 0.98774 1.00793 0.96872 1.21360 0.96236 0.79291 0.98828 1.22601 0.95438 0.98613 1.01658 1.20868 0.92208 0.89645 0.92598 1.44005 1.08397 1.13905 1.65281 1.19130 1.32088 0.84996 1.02188 0.91923 1.25347 1.00143 0.97912 0.95573 1.69912 1.35467 1.31668 1.17712 0.86280 0.77125 0.84754 0.78525 1.21261 1.21680 1.20447 1.20888 0.90357 0.89235 0.97392 1.22402 0.97028 0.98842 0.99654 0.76796 0.88186 0.87188 0.82252 0.90632 0.91192 0.90949 0.84347 0.90072 0.90752 0.90948 0.88408 0.92434 0.93337 0.88450 0.96379 0.93503 0.96121 0.92345 0.92540 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 19.25 29.55 0.57 -1.76 16 2 C -0.20 -2.75 12.29 -37.13 -0.46 -3.21 16 3 C 0.21 2.99 4.96 -6.83 -0.03 2.96 16 4 N -0.59 -9.54 2.36 -170.34 -0.40 -9.94 16 5 C 0.58 9.95 5.64 -12.18 -0.07 9.88 16 6 O -0.52 -10.61 16.44 5.36 0.09 -10.52 16 7 C 0.09 1.33 5.02 -83.01 -0.42 0.92 16 8 N -0.45 -6.07 9.19 -9.80 -0.09 -6.16 16 9 C 0.09 0.92 10.86 -17.56 -0.19 0.73 16 10 C -0.12 -1.05 5.91 -104.36 -0.62 -1.67 16 11 C -0.11 -0.54 10.03 36.00 0.36 -0.18 16 12 C -0.08 -0.74 9.55 -39.31 -0.38 -1.12 16 13 C -0.09 -1.05 5.93 -104.10 -0.62 -1.66 16 14 C -0.12 -1.30 9.71 36.00 0.35 -0.95 16 15 C 0.14 2.65 2.47 -67.87 -0.17 2.48 16 16 C -0.14 -2.83 4.89 -26.59 -0.13 -2.96 16 17 C 0.17 4.18 5.23 -3.71 -0.02 4.16 16 18 N -0.59 -14.86 2.99 -172.32 -0.52 -15.38 16 19 C -0.25 -6.92 9.55 -15.06 -0.14 -7.07 16 20 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 21 C 0.01 0.25 5.27 -17.43 -0.09 0.16 16 22 N -0.90 -26.07 10.78 55.49 0.60 -25.47 16 23 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 28 C -0.14 -2.51 5.33 -26.61 -0.14 -2.65 16 29 H 0.22 1.89 7.80 -54.09 -0.42 1.47 16 30 H 0.10 1.31 6.37 -51.93 -0.33 0.98 16 31 H 0.11 1.50 6.47 -51.92 -0.34 1.17 16 32 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 39 H 0.07 0.99 6.92 -51.93 -0.36 0.63 16 40 H 0.10 2.01 6.91 -51.92 -0.36 1.66 16 41 H 0.06 1.15 7.28 -51.93 -0.38 0.77 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -32.74 398.89 -9.00 -41.74 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.45 Total: 1.96 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.21 Total: 1.20 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.41 Total: -56.95 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.74 -9.00 -41.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724050285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.250 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds