Wall clock time and date at job start Wed Apr 1 2020 00:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47473 * 274.20641 * 3 2 1 5 5 C 1.34780 * 119.99696 * 275.31608 * 4 3 2 6 6 O 1.21506 * 120.00168 * 184.46997 * 5 4 3 7 7 C 1.48170 * 120.00167 * 4.46611 * 5 4 3 8 8 N 1.32749 * 119.72443 * 285.82842 * 7 5 4 9 9 C 1.31488 * 121.64538 * 179.97438 * 8 7 5 10 10 C 1.38609 * 120.90280 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.32576 * 179.97438 * 10 9 8 12 12 C 1.38585 * 119.34591 * 359.97283 * 10 9 8 13 13 C 1.38636 * 118.49122 * 359.75577 * 12 10 9 14 14 C 1.50696 * 120.46954 * 180.26553 * 13 12 10 15 15 C 1.46497 * 120.00066 * 95.31357 * 4 3 2 16 16 C 1.53075 * 109.45188 * 299.78683 * 15 4 3 17 17 C 1.53192 * 109.29215 * 181.24084 * 16 15 4 18 18 N 1.46919 * 108.89792 * 305.58304 * 17 16 15 19 19 C 1.36932 * 120.63194 * 233.51365 * 18 17 16 20 20 H 1.08007 * 120.00216 * 143.90338 * 19 18 17 21 21 C 1.38815 * 120.00387 * 323.90838 * 19 18 17 22 22 N 1.31628 * 119.99268 * 1.64046 * 21 19 18 23 23 Si 1.86799 * 120.00508 * 181.64276 * 21 19 18 24 24 H 1.48496 * 109.47109 * 89.99967 * 23 21 19 25 25 H 1.48497 * 109.46934 * 209.99921 * 23 21 19 26 26 H 1.48498 * 109.46763 * 329.99630 * 23 21 19 27 27 C 1.46924 * 118.73903 * 53.53584 * 18 17 16 28 28 C 1.53036 * 109.46053 * 60.00372 * 15 4 3 29 29 H 4.40641 * 5.51405 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47129 * 154.20375 * 3 2 1 31 31 H 1.09008 * 109.47515 * 34.20599 * 3 2 1 32 32 H 1.08004 * 119.55132 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46504 * 90.00142 * 11 10 9 34 34 H 1.08999 * 109.46899 * 209.99965 * 11 10 9 35 35 H 1.08993 * 109.47290 * 330.00267 * 11 10 9 36 36 H 1.08005 * 120.75363 * 179.97438 * 12 10 9 37 37 H 1.08998 * 109.47622 * 274.90254 * 14 13 12 38 38 H 1.09002 * 109.47230 * 34.90284 * 14 13 12 39 39 H 1.09005 * 109.47235 * 154.89863 * 14 13 12 40 40 H 1.09007 * 109.45590 * 179.97438 * 15 4 3 41 41 H 1.09003 * 109.38554 * 61.37500 * 16 15 4 42 42 H 1.09002 * 109.62716 * 301.26343 * 16 15 4 43 43 H 1.09003 * 109.58599 * 185.71908 * 17 16 15 44 44 H 1.09001 * 109.58473 * 65.44510 * 17 16 15 45 45 H 0.97002 * 119.99379 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.58679 * 66.17944 * 27 18 17 47 47 H 1.09004 * 109.58771 * 186.46080 * 27 18 17 48 48 H 1.08994 * 109.49902 * 58.65891 * 28 15 4 49 49 H 1.09003 * 109.49721 * 298.56175 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.1004 1.3775 5 6 3.2566 1.0095 2.1322 6 8 3.7376 0.9371 3.2457 7 6 2.8044 2.3180 1.6042 8 7 3.5244 2.9381 0.6773 9 6 3.1583 4.0999 0.1821 10 6 1.9986 4.7242 0.6140 11 6 1.5916 6.0559 0.0381 12 6 1.2170 4.1115 1.5806 13 6 1.6246 2.8843 2.0805 14 6 0.8054 2.1758 3.1283 15 6 3.4899 -1.4079 1.9345 16 6 2.2622 -2.3219 1.9134 17 6 2.6299 -3.6775 2.5250 18 7 3.7994 -4.2169 1.8180 19 6 3.7685 -5.4742 1.2763 20 1 4.2758 -5.6730 0.3437 21 6 3.0853 -6.4932 1.9256 22 7 2.4400 -6.2434 3.0454 23 14 3.0815 -8.2189 1.2104 24 1 4.2335 -8.9823 1.7536 25 1 1.8162 -8.9040 1.5775 26 1 3.1917 -8.1419 -0.2685 27 6 5.0030 -3.3820 1.7038 28 6 4.6101 -2.0308 1.0982 29 1 -1.0500 0.0002 0.0000 30 1 3.0088 0.9261 -0.4472 31 1 3.0097 -0.8491 -0.5778 32 1 3.7701 4.5746 -0.5708 33 1 0.9607 5.8960 -0.8363 34 1 1.0378 6.6217 0.7872 35 1 2.4819 6.6131 -0.2533 36 1 0.3091 4.5778 1.9339 37 1 1.0796 2.5464 4.1160 38 1 -0.2534 2.3642 2.9506 39 1 0.9974 1.1040 3.0763 40 1 3.8302 -1.2842 2.9627 41 1 1.9348 -2.4643 0.8835 42 1 1.4577 -1.8679 2.4920 43 1 1.7906 -4.3651 2.4207 44 1 2.8681 -3.5494 3.5809 45 1 1.9622 -6.9554 3.4989 46 1 5.4356 -3.2274 2.6923 47 1 5.7305 -3.8758 1.0597 48 1 5.4749 -1.3675 1.0968 49 1 4.2620 -2.1778 0.0758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724050285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:41 Heat of formation + Delta-G solvation = 59.216021 kcal Electronic energy + Delta-G solvation = -30368.396719 eV Core-core repulsion = 26489.885269 eV Total energy + Delta-G solvation = -3878.511451 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.09006 -40.63992 -38.98340 -37.09511 -34.93773 -34.73958 -34.37603 -33.48445 -31.96631 -31.36692 -28.87619 -28.49128 -28.29189 -26.88050 -24.88106 -23.90294 -23.77364 -22.49022 -21.19180 -20.88150 -19.43582 -18.67092 -18.48228 -17.98163 -17.83436 -16.88807 -16.23623 -16.05939 -15.60026 -15.50130 -15.40949 -15.34688 -14.90618 -14.74981 -14.66306 -14.29890 -14.28868 -14.12464 -14.10667 -14.01388 -13.49912 -13.35578 -13.26656 -13.23890 -12.88749 -12.78877 -12.62607 -12.55209 -12.23859 -12.01518 -11.95901 -11.63576 -11.46882 -11.45352 -11.31546 -11.08040 -10.59496 -10.57093 -10.48732 -9.96100 -9.78613 -8.58786 -7.87742 -5.45018 -0.18207 0.21557 1.24370 1.39525 1.47495 1.49082 1.57700 1.88140 2.16246 2.49705 2.60559 3.13411 3.29647 3.43502 3.56117 3.65151 3.71028 3.79581 3.91151 3.97002 4.03724 4.10166 4.18033 4.26429 4.37422 4.43202 4.45353 4.50196 4.58281 4.63957 4.71273 4.82685 4.83978 4.88382 4.97257 5.00466 5.02086 5.04021 5.10736 5.12161 5.21021 5.26691 5.26962 5.39493 5.49051 5.64358 5.66354 5.72633 6.14284 6.44375 6.65458 6.74374 6.87609 7.16101 7.81450 8.38488 9.17932 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.002736 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.759803 B =10229.776958 C =10379.635714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.217 3.783 4 N -0.584 5.584 5 C 0.580 3.420 6 O -0.569 6.569 7 C 0.062 3.938 8 N -0.478 5.478 9 C 0.085 3.915 10 C -0.109 4.109 11 C -0.108 4.108 12 C -0.079 4.079 13 C -0.096 4.096 14 C -0.112 4.112 15 C 0.153 3.847 16 C -0.120 4.120 17 C 0.183 3.817 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.069 0.931 21 C -0.045 4.045 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.266 1.266 27 C 0.146 3.854 28 C -0.124 4.124 29 H 0.247 0.753 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.189 0.811 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.171 0.829 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.067 0.933 44 H -0.011 1.011 45 H 0.251 0.749 46 H 0.010 0.990 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 26.034 -9.252 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.239 4.239 3 C 0.096 3.904 4 N -0.313 5.313 5 C 0.367 3.633 6 O -0.447 6.447 7 C -0.076 4.076 8 N -0.188 5.188 9 C -0.075 4.075 10 C -0.111 4.111 11 C -0.165 4.165 12 C -0.104 4.104 13 C -0.099 4.099 14 C -0.169 4.169 15 C 0.051 3.949 16 C -0.160 4.160 17 C 0.056 3.944 18 N -0.333 5.333 19 C -0.395 4.395 20 H 0.086 0.914 21 C -0.241 4.241 22 N -0.581 5.581 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.191 1.191 27 C 0.020 3.980 28 C -0.164 4.164 29 H 0.263 0.737 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.205 0.795 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.189 0.811 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.007 0.993 45 H 0.060 0.940 46 H 0.028 0.972 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.272 25.430 -8.855 27.438 hybrid contribution -0.740 -1.097 0.615 1.460 sum -6.012 24.332 -8.239 26.384 Atomic orbital electron populations 1.25629 0.96573 0.99604 0.96821 1.23630 0.95250 1.01859 1.03194 1.18506 0.84450 1.04977 0.82495 1.48099 1.63191 1.06341 1.13664 1.18444 0.76555 0.84168 0.84086 1.90757 1.45855 1.86581 1.21541 1.20553 0.94412 0.95277 0.97322 1.67526 1.31587 1.11018 1.08656 1.23265 0.95499 0.90094 0.98623 1.21512 0.94756 0.99044 0.95791 1.20850 1.03322 0.90513 1.01816 1.21703 1.00746 0.92589 0.95352 1.20904 0.94367 0.96524 0.98105 1.20791 1.00520 0.98676 0.96928 1.20981 0.95569 0.80486 0.97872 1.22260 0.96115 0.96429 1.01154 1.20571 0.91181 0.91152 0.91450 1.44228 1.09730 1.14128 1.65200 1.19479 1.31606 0.85917 1.02482 0.91359 1.26123 1.00176 1.01658 0.96132 1.70106 1.36411 1.32415 1.19172 0.85219 0.76639 0.79893 0.78364 1.21207 1.21980 1.19086 1.20997 0.89306 0.90399 0.97316 1.22213 0.97464 0.97086 0.99615 0.73700 0.87269 0.87036 0.79463 0.89211 0.89803 0.89580 0.81115 0.90220 0.87867 0.94134 0.91080 0.92106 0.93134 0.91432 0.99274 0.93989 0.97191 0.91444 0.90797 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 19.25 74.32 1.43 -2.37 16 2 C -0.24 -6.36 12.29 31.12 0.38 -5.98 16 3 C 0.22 6.01 4.96 84.57 0.42 6.43 16 4 N -0.58 -19.42 2.36 -811.13 -1.91 -21.33 16 5 C 0.58 20.59 5.64 86.88 0.49 21.08 16 6 O -0.57 -24.48 16.44 -3.73 -0.06 -24.54 16 7 C 0.06 1.78 5.02 41.89 0.21 1.99 16 8 N -0.48 -12.39 9.19 -184.91 -1.70 -14.09 16 9 C 0.09 1.48 10.86 84.83 0.92 2.40 16 10 C -0.11 -1.45 5.91 -19.69 -0.12 -1.57 16 11 C -0.11 -0.56 10.03 71.24 0.71 0.16 16 12 C -0.08 -1.21 9.55 22.45 0.21 -1.00 16 13 C -0.10 -2.23 5.93 -19.52 -0.12 -2.34 16 14 C -0.11 -2.49 9.71 71.23 0.69 -1.79 16 15 C 0.15 5.86 2.47 45.03 0.11 5.97 16 16 C -0.12 -4.91 4.89 30.68 0.15 -4.76 16 17 C 0.18 9.30 5.23 86.36 0.45 9.75 16 18 N -0.61 -31.42 2.99 -699.10 -2.09 -33.51 16 19 C -0.26 -14.62 9.55 84.03 0.80 -13.81 16 20 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 21 C -0.05 -2.55 5.27 84.86 0.45 -2.10 16 22 N -0.94 -55.88 10.78 21.65 0.23 -55.65 16 23 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.15 6.32 6.52 86.36 0.56 6.88 16 28 C -0.12 -4.48 5.33 30.67 0.16 -4.32 16 29 H 0.25 3.54 7.80 -4.42 -0.03 3.50 16 30 H 0.11 2.80 6.37 -2.39 -0.02 2.79 16 31 H 0.11 2.97 6.47 -2.38 -0.02 2.96 16 32 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.08 0.27 8.09 -2.39 -0.02 0.25 16 35 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 36 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16 39 H 0.04 1.15 6.92 -2.38 -0.02 1.13 16 40 H 0.07 3.13 6.91 -2.38 -0.02 3.11 16 41 H 0.06 2.46 7.28 -2.39 -0.02 2.44 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.07 2.76 7.93 -2.39 -0.02 2.75 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.07 2.48 6.72 -2.39 -0.02 2.46 16 Total: -1.00 -75.14 398.89 5.37 -69.77 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.94 Total: 17.82 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 7.93 Total: 14.63 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -5.47 Total: -124.58 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.14 5.37 -69.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724050285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.984 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds