Wall clock time and date at job start Wed Apr 1 2020 00:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35748 * 120.33358 * 2 1 4 4 C 1.40822 * 119.72014 * 180.30022 * 3 2 1 5 5 C 1.34543 * 120.58190 * 359.47269 * 4 3 2 6 6 N 1.37431 * 120.74090 * 0.49055 * 5 4 3 7 7 C 1.35137 * 131.28319 * 179.76412 * 6 5 4 8 8 C 1.38054 * 108.77093 * 180.02562 * 7 6 5 9 9 C 1.47495 * 126.37171 * 179.97438 * 8 7 6 10 10 O 1.21599 * 120.00019 * 187.16720 * 9 8 7 11 11 N 1.34777 * 120.00004 * 7.16982 * 9 8 7 12 12 C 1.48114 * 127.03023 * 185.33429 * 11 9 8 13 13 C 1.54594 * 103.42671 * 219.28602 * 12 11 9 14 14 C 1.54625 * 102.91167 * 322.87701 * 13 12 11 15 15 C 1.52999 * 110.40934 * 262.75984 * 14 13 12 16 16 C 1.52992 * 110.32866 * 140.58621 * 14 13 12 17 17 N 1.46506 * 109.46870 * 182.92083 * 16 14 13 18 18 C 1.36938 * 119.99594 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00662 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99623 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99825 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99768 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47377 * 90.00020 * 22 20 18 24 24 H 1.48497 * 109.47052 * 209.99790 * 22 20 18 25 25 H 1.48496 * 109.47266 * 329.99884 * 22 20 18 26 26 C 1.47482 * 127.03611 * 5.65491 * 11 9 8 27 27 C 1.41200 * 107.25317 * 0.02562 * 8 7 6 28 28 C 1.37943 * 119.81607 * 359.79156 * 6 5 4 29 29 H 1.08994 * 109.47481 * 89.99942 * 1 2 3 30 30 H 1.08998 * 109.47145 * 209.99934 * 1 2 3 31 31 H 1.09000 * 109.47400 * 329.99639 * 1 2 3 32 32 H 1.08003 * 120.13694 * 0.02835 * 3 2 1 33 33 H 1.07997 * 119.70920 * 179.69940 * 4 3 2 34 34 H 1.08002 * 119.62513 * 180.26377 * 5 4 3 35 35 H 1.08000 * 125.61439 * 359.97438 * 7 6 5 36 36 H 1.09004 * 110.66953 * 337.77563 * 12 11 9 37 37 H 1.09009 * 110.65830 * 100.89188 * 12 11 9 38 38 H 1.08997 * 110.84117 * 204.44743 * 13 12 11 39 39 H 1.09000 * 110.57527 * 81.17084 * 13 12 11 40 40 H 1.08994 * 109.47116 * 177.12568 * 15 14 13 41 41 H 1.08999 * 109.47248 * 297.12272 * 15 14 13 42 42 H 1.08996 * 109.47571 * 57.12229 * 15 14 13 43 43 H 1.08994 * 109.47497 * 302.92406 * 16 14 13 44 44 H 1.08999 * 109.47551 * 62.92573 * 16 14 13 45 45 H 0.96995 * 120.00107 * 0.02562 * 17 16 14 46 46 H 0.97001 * 119.99375 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.91510 * 273.88146 * 26 11 9 48 48 H 1.09007 * 109.91167 * 35.15697 * 26 11 9 49 49 H 1.08000 * 126.56135 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1566 -0.0064 5 6 4.2728 -0.0089 -0.0019 6 7 3.6004 -1.2076 -0.0010 7 6 4.0499 -2.4820 -0.0010 8 6 2.9650 -3.3357 -0.0005 9 6 3.0121 -4.8099 -0.0009 10 8 1.9870 -5.4509 -0.1318 11 7 4.1911 -5.4466 0.1439 12 6 4.4338 -6.9051 0.0572 13 6 5.4651 -7.1647 1.1793 14 6 6.3621 -5.9065 1.1220 15 6 7.6241 -6.1878 0.3040 16 6 6.7354 -5.4551 2.5353 17 7 7.5261 -4.2239 2.4618 18 6 7.9758 -3.6295 3.6105 19 1 7.7481 -4.0684 4.5707 20 6 8.7245 -2.4626 3.5409 21 7 9.0016 -1.9273 2.3708 22 14 9.3386 -1.6521 5.1078 23 1 10.6765 -2.1953 5.4547 24 1 9.4388 -0.1851 4.8999 25 1 8.3889 -1.9314 6.2147 26 6 5.5024 -4.8341 0.4274 27 6 1.8020 -2.5350 -0.0008 28 6 2.2211 -1.2203 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6602 2.1114 0.0005 33 1 4.1459 2.0888 -0.0113 34 1 5.3528 -0.0024 -0.0026 35 1 5.0871 -2.7831 -0.0022 36 1 3.5145 -7.4600 0.2449 37 1 4.8516 -7.1684 -0.9146 38 1 6.0463 -8.0630 0.9716 39 1 4.9680 -7.2405 2.1464 40 1 8.2197 -5.2780 0.2306 41 1 8.2088 -6.9662 0.7942 42 1 7.3429 -6.5197 -0.6954 43 1 5.8276 -5.2702 3.1095 44 1 7.3212 -6.2344 3.0229 45 1 7.7303 -3.8294 1.5996 46 1 9.5244 -1.1117 2.3223 47 1 5.9765 -4.5240 -0.5038 48 1 5.3763 -3.9752 1.0867 49 1 0.7802 -2.8846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724259511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:32 Heat of formation + Delta-G solvation = 56.308996 kcal Electronic energy + Delta-G solvation = -30210.149468 eV Core-core repulsion = 26331.511959 eV Total energy + Delta-G solvation = -3878.637509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.19728 -39.94034 -37.90529 -36.58753 -34.71322 -34.08267 -32.71985 -31.05253 -30.16800 -29.38002 -28.12767 -26.94773 -26.42127 -25.72080 -24.21294 -22.91893 -21.97393 -21.79181 -20.93458 -19.12949 -18.90096 -17.43132 -17.22919 -16.84821 -15.98907 -15.72901 -15.49589 -15.29265 -14.81096 -14.63348 -14.26655 -14.05620 -13.85310 -13.59195 -13.46858 -13.36319 -13.23839 -12.87836 -12.83218 -12.56157 -12.19955 -12.08875 -11.83741 -11.78960 -11.70932 -11.52747 -11.49514 -11.10300 -11.04696 -10.88044 -10.55365 -10.42774 -10.31216 -10.11615 -10.01480 -9.77676 -9.66611 -8.94119 -8.59221 -8.38658 -7.29298 -6.99115 -5.84860 -3.12295 0.76842 1.39969 2.21694 2.71799 3.19561 3.38438 3.44654 3.45496 3.46870 3.70138 4.48229 4.51679 4.59026 4.69679 4.73332 4.89607 4.91775 5.00041 5.05819 5.18506 5.35631 5.38052 5.41668 5.43937 5.45816 5.51671 5.53177 5.62754 5.72239 5.84169 5.89868 5.90624 5.91940 5.94082 5.95045 6.03591 6.12053 6.16004 6.29522 6.33476 6.35131 6.39841 6.49804 6.61251 6.72635 6.78345 6.81914 6.92795 7.29931 7.65018 7.74237 8.34611 8.41120 9.46633 10.02374 10.37853 11.38078 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.004531 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.262056 B = 6178.066106 C = 9132.928539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.047 4.047 3 C -0.139 4.139 4 C -0.137 4.137 5 C 0.047 3.953 6 N -0.335 5.335 7 C -0.001 4.001 8 C -0.172 4.172 9 C 0.609 3.391 10 O -0.550 6.550 11 N -0.616 5.616 12 C 0.108 3.892 13 C -0.124 4.124 14 C -0.079 4.079 15 C -0.133 4.133 16 C 0.165 3.835 17 N -0.730 5.730 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.935 5.935 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.099 3.901 27 C -0.137 4.137 28 C 0.025 3.975 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.067 0.933 48 H 0.096 0.904 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 0.618 -8.465 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.048 4.048 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.071 4.071 6 N 0.002 4.998 7 C -0.135 4.135 8 C -0.180 4.180 9 C 0.400 3.600 10 O -0.429 6.429 11 N -0.349 5.349 12 C -0.015 4.015 13 C -0.163 4.163 14 C -0.080 4.080 15 C -0.190 4.190 16 C 0.038 3.962 17 N -0.375 5.375 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.023 4.023 27 C -0.161 4.161 28 C -0.079 4.079 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.184 0.816 35 H 0.206 0.794 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.114 0.886 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.917 0.537 -8.372 14.574 hybrid contribution 0.856 0.773 0.697 1.348 sum -11.061 1.311 -7.675 13.527 Atomic orbital electron populations 1.20697 0.89829 1.03278 1.02681 1.19313 0.96290 0.90172 0.99027 1.20792 0.93724 0.97698 1.03671 1.20678 0.94673 0.97132 1.03226 1.21840 0.98960 0.82995 1.03337 1.41330 1.07072 1.05553 1.45829 1.22986 1.00352 0.80415 1.09737 1.19469 0.93407 0.92225 1.12855 1.16996 0.81568 0.85778 0.75648 1.90733 1.32691 1.67702 1.51767 1.48611 1.07465 1.08264 1.70548 1.22358 0.99310 0.81131 0.98682 1.22751 0.96735 0.97703 0.99111 1.21676 0.94909 0.93982 0.97446 1.21810 0.96346 1.02689 0.98153 1.20731 0.94358 0.89725 0.91429 1.42376 1.62779 1.25691 1.06645 1.19233 1.26206 1.04490 0.86799 0.91243 1.24672 1.01136 0.98337 0.96605 1.69639 1.44287 1.22306 1.22195 0.86227 0.78803 0.78608 0.82809 1.21718 1.21830 1.20812 1.22654 0.82197 0.97619 0.99876 1.20944 0.98351 0.88809 1.08038 1.18623 0.81982 0.94862 1.12417 0.90699 0.90922 0.91061 0.85137 0.83710 0.81564 0.79425 0.89952 0.91205 0.89959 0.90621 0.91227 0.92333 0.93336 0.96119 0.95788 0.78289 0.93606 0.91466 0.88631 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.91 36.00 0.36 -0.60 16 2 C -0.05 -0.57 5.91 -104.32 -0.62 -1.18 16 3 C -0.14 -1.50 9.72 -39.50 -0.38 -1.88 16 4 C -0.14 -1.52 9.97 -39.91 -0.40 -1.92 16 5 C 0.05 0.62 10.89 -16.35 -0.18 0.44 16 6 N -0.34 -5.10 2.92 -60.42 -0.18 -5.28 16 7 C 0.00 -0.02 9.97 -16.16 -0.16 -0.18 16 8 C -0.17 -2.89 6.06 -105.07 -0.64 -3.52 16 9 C 0.61 10.74 7.88 -12.49 -0.10 10.65 16 10 O -0.55 -10.95 17.11 5.28 0.09 -10.86 16 11 N -0.62 -9.57 3.29 -171.22 -0.56 -10.14 16 12 C 0.11 1.41 7.09 -2.32 -0.02 1.39 16 13 C -0.12 -1.57 6.16 -25.04 -0.15 -1.72 16 14 C -0.08 -1.18 0.68 -153.14 -0.10 -1.28 16 15 C -0.13 -1.86 8.04 37.16 0.30 -1.56 16 16 C 0.17 3.13 4.90 -4.04 -0.02 3.11 16 17 N -0.73 -16.98 4.88 -59.91 -0.29 -17.28 16 18 C -0.24 -6.29 9.99 -15.06 -0.15 -6.44 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.94 -26.41 13.06 55.49 0.72 -25.68 16 22 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.10 1.52 4.03 -2.98 -0.01 1.51 16 27 C -0.14 -2.14 10.28 -38.55 -0.40 -2.54 16 28 C 0.03 0.37 6.60 -84.01 -0.55 -0.18 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.19 2.89 4.87 -52.49 -0.26 2.63 16 36 H 0.08 1.10 7.81 -51.93 -0.41 0.69 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 39 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 40 H 0.07 1.13 6.99 -51.93 -0.36 0.76 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.38 9.12 6.27 -40.82 -0.26 8.86 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.07 0.96 7.36 -51.93 -0.38 0.57 16 48 H 0.10 1.68 5.16 -51.92 -0.27 1.41 16 49 H 0.15 2.16 7.93 -52.49 -0.42 1.74 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -32.27 392.73 -9.97 -42.25 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.33 Total: 10.68 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.32 Total: -6.34 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.31 Total: -58.37 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.27 -9.97 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724259511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.555 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds