Wall clock time and date at job start Wed Apr 1 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47200 * 2 1 4 4 C 1.38263 * 119.99621 * 264.99689 * 3 2 1 5 5 C 1.38209 * 119.99863 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99796 * 359.97231 * 5 4 3 7 7 C 1.38208 * 120.00567 * 359.96225 * 6 5 4 8 8 C 1.38212 * 120.00264 * 84.72640 * 3 2 1 9 9 C 1.50697 * 120.00088 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.47360 * 41.91994 * 9 8 3 11 11 C 1.52997 * 109.47262 * 161.92330 * 9 8 3 12 12 N 1.46500 * 109.47036 * 175.00019 * 11 9 8 13 13 C 1.34778 * 119.99950 * 180.02562 * 12 11 9 14 14 O 1.21630 * 119.99869 * 359.97438 * 13 12 11 15 15 C 1.47270 * 119.99962 * 180.02562 * 13 12 11 16 16 C 1.46684 * 126.94387 * 0.02562 * 15 13 12 17 17 C 1.34484 * 106.33109 * 179.97438 * 16 15 13 18 18 N 1.36440 * 108.85986 * 0.02562 * 17 16 15 19 19 H 0.97003 * 124.85489 * 180.02562 * 18 17 16 20 20 C 1.34661 * 110.29900 * 359.74749 * 18 17 16 21 21 C 1.50699 * 125.80457 * 180.29286 * 20 18 17 22 22 N 1.46500 * 109.46916 * 281.92124 * 9 8 3 23 23 C 1.36940 * 120.00340 * 303.84109 * 22 9 8 24 24 H 1.08004 * 119.99579 * 5.16608 * 23 22 9 25 25 C 1.38810 * 119.99997 * 185.16870 * 23 22 9 26 26 N 1.31612 * 120.00246 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99581 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47460 * 90.00257 * 27 25 23 29 29 H 1.48501 * 109.47301 * 210.00179 * 27 25 23 30 30 H 1.48507 * 109.47507 * 329.99852 * 27 25 23 31 31 H 1.08999 * 109.46665 * 300.00540 * 1 2 3 32 32 H 1.08998 * 109.46867 * 60.00083 * 1 2 3 33 33 H 1.08994 * 109.47643 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46677 * 119.99603 * 2 1 3 35 35 H 1.08999 * 109.46665 * 239.99460 * 2 1 3 36 36 H 1.07996 * 120.00204 * 359.97438 * 4 3 2 37 37 H 1.08004 * 120.00245 * 179.97438 * 5 4 3 38 38 H 1.08009 * 119.99589 * 179.97438 * 6 5 4 39 39 H 1.07994 * 120.00496 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.47293 * 294.99801 * 11 9 8 41 41 H 1.08997 * 109.47381 * 54.99632 * 11 9 8 42 42 H 0.96993 * 120.00495 * 359.97438 * 12 11 9 43 43 H 1.08001 * 126.83101 * 359.96179 * 16 15 13 44 44 H 1.08001 * 125.56541 * 179.97438 * 17 16 15 45 45 H 1.09005 * 109.46920 * 270.13290 * 21 20 18 46 46 H 1.08997 * 109.47110 * 30.13678 * 21 20 18 47 47 H 1.09001 * 109.47306 * 150.13813 * 21 20 18 48 48 H 0.97005 * 120.00191 * 123.83921 * 22 9 8 49 49 H 0.97006 * 120.00366 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1929 5 6 2.8225 3.3405 -1.1929 6 6 2.9544 4.0271 -0.0001 7 6 2.6244 3.4110 1.1922 8 6 2.1591 2.1090 1.1918 9 6 1.7943 1.4389 2.4914 10 1 2.1630 0.4131 2.4873 11 6 2.4277 2.2039 3.6551 12 7 1.9769 1.6249 4.9231 13 6 2.4087 2.1411 6.0909 14 8 3.1729 3.0873 6.0920 15 6 1.9560 1.5587 7.3655 16 6 1.0436 0.4236 7.5415 17 6 0.9162 0.2430 8.8680 18 7 1.6748 1.1745 9.5149 19 1 1.7524 1.2541 10.4785 20 6 2.3054 1.9636 8.6243 21 6 3.2359 3.1010 8.9580 22 7 0.3374 1.4335 2.6459 23 6 -0.3604 2.6109 2.5998 24 1 0.1512 3.5330 2.3666 25 6 -1.7253 2.6190 2.8526 26 7 -2.3488 1.4952 3.1363 27 14 -2.6769 4.2252 2.7904 28 1 -3.1828 4.4478 1.4120 29 1 -3.8223 4.1588 3.7332 30 1 -1.7824 5.3460 3.1764 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5139 -0.8900 36 1 2.2585 1.5012 -2.1245 37 1 3.0798 3.8223 -2.1246 38 1 3.3153 5.0451 -0.0001 39 1 2.7271 3.9474 2.1238 40 1 3.5133 2.1326 3.5888 41 1 2.1288 3.2510 3.6072 42 1 1.3672 0.8706 4.9223 43 1 0.5687 -0.1523 6.7610 44 1 0.3113 -0.5149 9.3436 45 1 2.6631 4.0237 9.0515 46 1 3.7432 2.8912 9.8997 47 1 3.9746 3.2110 8.1641 48 1 -0.1329 0.5959 2.7809 49 1 -3.3025 1.5010 3.3133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724507382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:41 Heat of formation + Delta-G solvation = 41.311124 kcal Electronic energy + Delta-G solvation = -30229.105647 eV Core-core repulsion = 26349.817782 eV Total energy + Delta-G solvation = -3879.287865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.03143 -39.46222 -38.34503 -35.78126 -33.73564 -33.10152 -31.93249 -31.36763 -30.74505 -29.65625 -28.78716 -27.19488 -26.01696 -24.40606 -23.24633 -22.67940 -21.90475 -20.60480 -20.09520 -19.61407 -18.82692 -17.53225 -17.38531 -16.00860 -15.66382 -15.37091 -15.15531 -14.82951 -14.70981 -14.17873 -14.05705 -13.65626 -13.56558 -13.19244 -13.17128 -13.03023 -12.85281 -12.66398 -12.58291 -12.47005 -12.31327 -12.28425 -11.86811 -11.54658 -11.39447 -11.13516 -11.09704 -10.97073 -10.77210 -10.65477 -10.20270 -10.03991 -9.84097 -9.62963 -9.29092 -8.89898 -8.68985 -8.28328 -8.21847 -8.00865 -7.94396 -7.01371 -5.79165 -3.08686 1.95244 1.97196 2.03858 2.62995 3.24043 3.44828 3.51016 3.53157 4.00368 4.12479 4.31635 4.62751 4.95542 5.11300 5.27169 5.28694 5.33297 5.41773 5.47706 5.54863 5.61135 5.67508 5.67786 5.75208 5.77005 5.82718 5.91718 6.06711 6.07376 6.08153 6.14211 6.16302 6.18682 6.35810 6.49568 6.51565 6.58988 6.64172 6.72849 6.74149 6.93421 7.02253 7.05481 7.08852 7.24624 7.33216 7.42055 7.54756 7.59442 7.77140 8.32708 8.36793 8.97883 9.50835 9.96823 10.34188 11.42261 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003894 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.885182 B = 7188.101390 C = 8234.445154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.063 4.063 4 C -0.126 4.126 5 C -0.132 4.132 6 C -0.131 4.131 7 C -0.111 4.111 8 C -0.060 4.060 9 C 0.196 3.804 10 H 0.071 0.929 11 C 0.110 3.890 12 N -0.697 5.697 13 C 0.587 3.413 14 O -0.569 6.569 15 C -0.225 4.225 16 C -0.158 4.158 17 C -0.026 4.026 18 N -0.557 5.557 19 H 0.412 0.588 20 C 0.094 3.906 21 C -0.091 4.091 22 N -0.703 5.703 23 C -0.229 4.229 24 H 0.071 0.929 25 C -0.004 4.004 26 N -0.929 5.929 27 Si 0.898 3.102 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.282 1.282 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.387 0.613 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 -4.114 5.572 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.113 4.113 3 C -0.064 4.064 4 C -0.144 4.144 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.129 4.129 8 C -0.062 4.062 9 C 0.085 3.915 10 H 0.089 0.911 11 C -0.016 4.016 12 N -0.345 5.345 13 C 0.375 3.625 14 O -0.450 6.450 15 C -0.235 4.235 16 C -0.182 4.182 17 C -0.152 4.152 18 N -0.153 5.153 19 H 0.248 0.752 20 C -0.023 4.023 21 C -0.149 4.149 22 N -0.344 5.344 23 C -0.360 4.360 24 H 0.089 0.911 25 C -0.200 4.200 26 N -0.577 5.577 27 Si 0.729 3.271 28 H -0.219 1.219 29 H -0.220 1.220 30 H -0.208 1.208 31 H 0.130 0.870 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.165 0.835 44 H 0.184 0.816 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.223 0.777 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.462 -3.322 5.690 12.364 hybrid contribution -1.394 0.412 0.267 1.478 sum 9.068 -2.910 5.957 11.233 Atomic orbital electron populations 1.22088 0.93567 1.01032 1.05514 1.20454 0.97384 0.92358 1.01065 1.19657 0.97866 0.96407 0.92469 1.20877 1.01119 0.95267 0.97112 1.20926 1.01592 0.94988 0.97484 1.21006 1.01664 0.99356 0.92863 1.21184 0.98834 0.94879 0.98027 1.20249 0.96031 0.94238 0.95727 1.19383 0.86880 0.96281 0.88910 0.91135 1.21903 0.96826 0.99130 0.83732 1.45472 1.48463 1.35689 1.04905 1.17277 0.80023 0.82227 0.82969 1.90669 1.37666 1.28841 1.87868 1.20258 1.08010 1.02959 0.92233 1.22139 1.01554 0.99106 0.95450 1.21661 1.02594 0.97993 0.92996 1.41533 1.38088 1.26958 1.08695 0.75244 1.20288 0.98082 0.95430 0.88550 1.20526 0.97889 0.93929 1.02522 1.42448 0.98976 1.07537 1.85437 1.19070 0.90336 0.87274 1.39343 0.91131 1.24614 0.96745 0.96471 1.02134 1.69621 1.09179 1.24528 1.54416 0.86330 0.79816 0.83769 0.77171 1.21876 1.21968 1.20813 0.86990 0.94069 0.94053 0.91538 0.92856 0.87094 0.87178 0.87035 0.86002 0.92951 0.91228 0.76252 0.83504 0.81614 0.90709 0.92354 0.88030 0.77701 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.88 37.16 0.37 -2.56 16 2 C -0.08 -1.18 5.56 -27.88 -0.16 -1.33 16 3 C -0.06 -1.09 5.13 -104.62 -0.54 -1.62 16 4 C -0.13 -2.00 9.68 -39.58 -0.38 -2.38 16 5 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 6 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 7 C -0.11 -1.97 8.52 -39.58 -0.34 -2.30 16 8 C -0.06 -1.08 4.60 -104.62 -0.48 -1.56 16 9 C 0.20 3.55 2.45 -69.09 -0.17 3.38 16 10 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 11 C 0.11 2.04 4.11 -4.04 -0.02 2.03 16 12 N -0.70 -12.80 5.38 -61.43 -0.33 -13.13 16 13 C 0.59 11.24 7.81 -12.59 -0.10 11.14 16 14 O -0.57 -12.03 14.82 5.25 0.08 -11.95 16 15 C -0.22 -3.74 6.29 -103.35 -0.65 -4.39 16 16 C -0.16 -2.30 10.56 -37.50 -0.40 -2.70 16 17 C -0.03 -0.30 11.89 -16.83 -0.20 -0.50 16 18 N -0.56 -5.99 5.90 -9.11 -0.05 -6.05 16 19 H 0.41 2.87 8.96 -40.82 -0.37 2.50 16 20 C 0.09 1.31 7.17 -81.88 -0.59 0.72 16 21 C -0.09 -1.10 9.88 36.01 0.36 -0.74 16 22 N -0.70 -15.02 2.73 -54.55 -0.15 -15.17 16 23 C -0.23 -5.77 8.65 -15.06 -0.13 -5.90 16 24 H 0.07 1.84 6.93 -52.48 -0.36 1.48 16 25 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 26 N -0.93 -25.76 13.06 55.49 0.72 -25.04 16 27 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 31 H 0.11 2.38 4.71 -51.93 -0.24 2.13 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.99 6.38 -51.93 -0.33 0.66 16 35 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.12 2.17 5.84 -52.49 -0.31 1.86 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.46 6.05 -51.93 -0.31 1.15 16 42 H 0.40 7.14 7.26 -40.82 -0.30 6.84 16 43 H 0.15 2.05 7.70 -52.49 -0.40 1.65 16 44 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 1.44 6.47 -51.93 -0.34 1.10 16 48 H 0.39 8.73 7.20 -40.82 -0.29 8.44 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -31.01 393.92 -10.08 -41.09 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -6.96 Total: 20.82 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -4.31 Total: -13.82 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.19 Total: -59.38 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.01 -10.08 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724507382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.405 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds