Wall clock time and date at job start Wed Apr 1 2020 00:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47200 * 2 1 4 4 C 1.38263 * 119.99621 * 264.99689 * 3 2 1 5 5 C 1.38209 * 119.99863 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99796 * 359.97231 * 5 4 3 7 7 C 1.38208 * 120.00567 * 359.96225 * 6 5 4 8 8 C 1.38212 * 120.00264 * 84.72640 * 3 2 1 9 9 C 1.50697 * 120.00088 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.47360 * 41.91994 * 9 8 3 11 11 C 1.52997 * 109.47262 * 161.92330 * 9 8 3 12 12 N 1.46500 * 109.47036 * 175.00019 * 11 9 8 13 13 C 1.34778 * 119.99950 * 180.02562 * 12 11 9 14 14 O 1.21630 * 119.99869 * 359.97438 * 13 12 11 15 15 C 1.47270 * 119.99962 * 180.02562 * 13 12 11 16 16 C 1.46684 * 126.94387 * 0.02562 * 15 13 12 17 17 C 1.34484 * 106.33109 * 179.97438 * 16 15 13 18 18 N 1.36440 * 108.85986 * 0.02562 * 17 16 15 19 19 H 0.97003 * 124.85489 * 180.02562 * 18 17 16 20 20 C 1.34661 * 110.29900 * 359.74749 * 18 17 16 21 21 C 1.50699 * 125.80457 * 180.29286 * 20 18 17 22 22 N 1.46500 * 109.46916 * 281.92124 * 9 8 3 23 23 C 1.36940 * 120.00340 * 303.84109 * 22 9 8 24 24 H 1.08004 * 119.99579 * 5.16608 * 23 22 9 25 25 C 1.38810 * 119.99997 * 185.16870 * 23 22 9 26 26 N 1.31612 * 120.00246 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99581 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47460 * 90.00257 * 27 25 23 29 29 H 1.48501 * 109.47301 * 210.00179 * 27 25 23 30 30 H 1.48507 * 109.47507 * 329.99852 * 27 25 23 31 31 H 1.08999 * 109.46665 * 300.00540 * 1 2 3 32 32 H 1.08998 * 109.46867 * 60.00083 * 1 2 3 33 33 H 1.08994 * 109.47643 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46677 * 119.99603 * 2 1 3 35 35 H 1.08999 * 109.46665 * 239.99460 * 2 1 3 36 36 H 1.07996 * 120.00204 * 359.97438 * 4 3 2 37 37 H 1.08004 * 120.00245 * 179.97438 * 5 4 3 38 38 H 1.08009 * 119.99589 * 179.97438 * 6 5 4 39 39 H 1.07994 * 120.00496 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.47293 * 294.99801 * 11 9 8 41 41 H 1.08997 * 109.47381 * 54.99632 * 11 9 8 42 42 H 0.96993 * 120.00495 * 359.97438 * 12 11 9 43 43 H 1.08001 * 126.83101 * 359.96179 * 16 15 13 44 44 H 1.08001 * 125.56541 * 179.97438 * 17 16 15 45 45 H 1.09005 * 109.46920 * 270.13290 * 21 20 18 46 46 H 1.08997 * 109.47110 * 30.13678 * 21 20 18 47 47 H 1.09001 * 109.47306 * 150.13813 * 21 20 18 48 48 H 0.97005 * 120.00191 * 123.83921 * 22 9 8 49 49 H 0.97006 * 120.00366 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1929 5 6 2.8225 3.3405 -1.1929 6 6 2.9544 4.0271 -0.0001 7 6 2.6244 3.4110 1.1922 8 6 2.1591 2.1090 1.1918 9 6 1.7943 1.4389 2.4914 10 1 2.1630 0.4131 2.4873 11 6 2.4277 2.2039 3.6551 12 7 1.9769 1.6249 4.9231 13 6 2.4087 2.1411 6.0909 14 8 3.1729 3.0873 6.0920 15 6 1.9560 1.5587 7.3655 16 6 1.0436 0.4236 7.5415 17 6 0.9162 0.2430 8.8680 18 7 1.6748 1.1745 9.5149 19 1 1.7524 1.2541 10.4785 20 6 2.3054 1.9636 8.6243 21 6 3.2359 3.1010 8.9580 22 7 0.3374 1.4335 2.6459 23 6 -0.3604 2.6109 2.5998 24 1 0.1512 3.5330 2.3666 25 6 -1.7253 2.6190 2.8526 26 7 -2.3488 1.4952 3.1363 27 14 -2.6769 4.2252 2.7904 28 1 -3.1828 4.4478 1.4120 29 1 -3.8223 4.1588 3.7332 30 1 -1.7824 5.3460 3.1764 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5139 -0.8900 36 1 2.2585 1.5012 -2.1245 37 1 3.0798 3.8223 -2.1246 38 1 3.3153 5.0451 -0.0001 39 1 2.7271 3.9474 2.1238 40 1 3.5133 2.1326 3.5888 41 1 2.1288 3.2510 3.6072 42 1 1.3672 0.8706 4.9223 43 1 0.5687 -0.1523 6.7610 44 1 0.3113 -0.5149 9.3436 45 1 2.6631 4.0237 9.0515 46 1 3.7432 2.8912 9.8997 47 1 3.9746 3.2110 8.1641 48 1 -0.1329 0.5959 2.7809 49 1 -3.3025 1.5010 3.3133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724507382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:40 Heat of formation + Delta-G solvation = 23.359591 kcal Electronic energy + Delta-G solvation = -30229.884084 eV Core-core repulsion = 26349.817782 eV Total energy + Delta-G solvation = -3880.066302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08812 -40.83516 -39.77245 -37.34223 -35.19447 -34.67717 -33.54141 -32.39777 -31.88019 -31.27688 -30.14239 -28.63620 -27.16795 -26.13150 -24.57127 -24.20846 -23.19871 -21.75855 -21.29692 -21.08634 -20.18528 -19.22165 -18.53625 -17.37395 -17.09870 -16.91642 -16.55131 -16.21451 -16.09132 -15.73125 -15.53913 -15.11037 -14.85620 -14.64219 -14.51013 -14.32418 -14.07017 -13.96755 -13.78787 -13.65572 -13.52307 -13.48582 -13.38807 -13.08926 -12.86623 -12.71585 -12.50580 -12.47129 -12.42141 -12.17370 -11.97450 -11.74141 -11.38213 -11.17807 -10.87332 -10.73928 -9.94853 -9.60799 -9.54022 -9.35009 -9.04729 -8.87354 -7.85675 -5.10063 0.65096 0.66099 0.83440 1.42842 1.46031 1.50868 1.59174 2.25742 2.58006 2.66026 2.75721 3.01466 3.48115 3.94595 3.97449 4.06950 4.09207 4.16570 4.18773 4.25121 4.34118 4.36003 4.40205 4.45039 4.54004 4.70329 4.74378 4.75390 4.81411 4.83254 4.87623 4.89100 5.03452 5.10301 5.14359 5.21109 5.26897 5.33064 5.35268 5.42407 5.65469 5.69583 5.74644 5.81575 5.84231 5.88939 6.01462 6.03839 6.30680 6.35831 6.71471 6.87343 7.46162 7.50496 8.09525 8.39724 9.35689 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003894 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.885182 B = 7188.101390 C = 8234.445154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 C -0.076 4.076 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.080 4.080 9 C 0.203 3.797 10 H 0.091 0.909 11 C 0.121 3.879 12 N -0.697 5.697 13 C 0.577 3.423 14 O -0.599 6.599 15 C -0.270 4.270 16 C -0.191 4.191 17 C -0.001 4.001 18 N -0.536 5.536 19 H 0.434 0.566 20 C 0.096 3.904 21 C -0.088 4.088 22 N -0.699 5.699 23 C -0.203 4.203 24 H 0.058 0.942 25 C -0.054 4.054 26 N -0.951 5.951 27 Si 0.937 3.063 28 H -0.294 1.294 29 H -0.299 1.299 30 H -0.287 1.287 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.404 0.596 43 H 0.143 0.857 44 H 0.208 0.792 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.383 0.617 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.884 -5.004 5.883 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.107 4.107 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.082 4.082 9 C 0.094 3.906 10 H 0.108 0.892 11 C -0.005 4.005 12 N -0.345 5.345 13 C 0.367 3.633 14 O -0.484 6.484 15 C -0.280 4.280 16 C -0.214 4.214 17 C -0.129 4.129 18 N -0.134 5.134 19 H 0.274 0.726 20 C -0.023 4.023 21 C -0.146 4.146 22 N -0.339 5.339 23 C -0.335 4.335 24 H 0.076 0.924 25 C -0.247 4.247 26 N -0.602 5.602 27 Si 0.769 3.231 28 H -0.222 1.222 29 H -0.225 1.225 30 H -0.213 1.213 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.240 0.760 43 H 0.160 0.840 44 H 0.224 0.776 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.217 0.783 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.321 -4.214 6.019 13.496 hybrid contribution -1.536 0.703 0.169 1.698 sum 9.785 -3.511 6.188 12.098 Atomic orbital electron populations 1.21967 0.95214 1.01199 1.03295 1.20432 0.95662 0.91932 1.02625 1.19905 0.98043 0.97189 0.92567 1.21241 1.00224 0.95704 0.97594 1.21320 1.00175 0.94824 0.98344 1.21297 1.01243 1.00406 0.92584 1.21250 1.00017 0.95110 0.98527 1.20217 0.97553 0.94665 0.95814 1.19456 0.84778 0.97428 0.88965 0.89163 1.21741 0.97165 0.97500 0.84121 1.45493 1.48482 1.35685 1.04869 1.17809 0.79540 0.81907 0.84009 1.90633 1.39103 1.30215 1.88410 1.20302 1.10534 1.05096 0.92055 1.22241 1.02617 0.99452 0.97130 1.22207 1.01112 0.97567 0.92008 1.41518 1.36611 1.25620 1.09608 0.72595 1.20484 0.97830 0.95692 0.88323 1.20507 0.97202 0.93393 1.03461 1.42362 1.00252 1.06063 1.85185 1.19078 0.90169 0.87961 1.36284 0.92357 1.25017 0.97689 0.97941 1.04021 1.69704 1.08658 1.25210 1.56601 0.85691 0.78753 0.81968 0.76655 1.22163 1.22545 1.21272 0.90473 0.94814 0.92760 0.91011 0.90233 0.84586 0.84029 0.85047 0.87221 0.92295 0.94162 0.75983 0.83965 0.77568 0.90676 0.88512 0.90600 0.78252 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.88 71.98 0.71 -4.82 16 2 C -0.07 -2.05 5.56 29.85 0.17 -1.88 16 3 C -0.08 -2.52 5.13 -19.87 -0.10 -2.62 16 4 C -0.13 -3.80 9.68 22.27 0.22 -3.58 16 5 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 6 C -0.14 -4.26 10.05 22.27 0.22 -4.03 16 7 C -0.13 -4.69 8.52 22.27 0.19 -4.50 16 8 C -0.08 -2.90 4.60 -19.87 -0.09 -2.99 16 9 C 0.20 7.49 2.45 44.24 0.11 7.59 16 10 H 0.09 2.95 6.56 -2.39 -0.02 2.94 16 11 C 0.12 4.69 4.11 86.38 0.35 5.04 16 12 N -0.70 -26.81 5.38 -466.52 -2.51 -29.33 16 13 C 0.58 23.13 7.81 86.62 0.68 23.81 16 14 O -0.60 -26.67 14.82 -4.13 -0.06 -26.73 16 15 C -0.27 -9.13 6.29 -19.04 -0.12 -9.24 16 16 C -0.19 -5.48 10.56 23.62 0.25 -5.23 16 17 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 18 N -0.54 -10.04 5.90 -182.73 -1.08 -11.12 16 19 H 0.43 4.36 8.96 -92.71 -0.83 3.53 16 20 C 0.10 2.58 7.17 41.78 0.30 2.88 16 21 C -0.09 -2.05 9.88 71.24 0.70 -1.34 16 22 N -0.70 -30.57 2.73 -326.50 -0.89 -31.46 16 23 C -0.20 -10.45 8.65 84.03 0.73 -9.72 16 24 H 0.06 3.14 6.93 -2.91 -0.02 3.12 16 25 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 26 N -0.95 -53.90 13.06 21.65 0.28 -53.61 16 27 Si 0.94 46.84 29.55 68.60 2.03 48.87 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 30 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 31 H 0.08 3.29 4.71 -2.39 -0.01 3.28 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 2.02 6.38 -2.38 -0.02 2.01 16 35 H 0.08 1.94 8.05 -2.39 -0.02 1.92 16 36 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 37 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.11 4.12 5.84 -2.91 -0.02 4.10 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.04 1.79 6.05 -2.39 -0.01 1.78 16 42 H 0.40 15.02 7.26 -92.71 -0.67 14.34 16 43 H 0.14 4.07 7.70 -2.91 -0.02 4.05 16 44 H 0.21 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 2.19 6.47 -2.39 -0.02 2.18 16 48 H 0.38 17.66 7.20 -92.70 -0.67 16.99 16 49 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -69.76 393.92 2.60 -67.17 By element: Atomic # 1 Polarization: 52.92 SS G_CDS: -1.16 Total: 51.75 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 5.99 Total: -15.53 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -4.20 Total: -125.53 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.06 Total: -26.73 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -69.76 2.60 -67.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724507382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.528 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds