Wall clock time and date at job start Wed Apr 1 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47321 * 2 1 4 4 C 1.38260 * 119.99612 * 266.04684 * 3 2 1 5 5 C 1.38214 * 119.99883 * 180.27858 * 4 3 2 6 6 C 1.38260 * 119.99885 * 359.74225 * 5 4 3 7 7 C 1.38215 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.38207 * 120.00105 * 85.79069 * 3 2 1 9 9 C 1.50700 * 120.00390 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.46806 * 316.30060 * 9 8 3 11 11 C 1.52995 * 109.47361 * 196.29267 * 9 8 3 12 12 N 1.46504 * 109.47087 * 182.54095 * 11 9 8 13 13 C 1.34773 * 119.99969 * 180.02562 * 12 11 9 14 14 O 1.21627 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.47260 * 119.99933 * 179.97438 * 13 12 11 16 16 C 1.46694 * 126.94246 * 0.02562 * 15 13 12 17 17 C 1.34481 * 106.33257 * 179.97438 * 16 15 13 18 18 N 1.36448 * 108.85903 * 0.02562 * 17 16 15 19 19 C 1.46500 * 124.85128 * 179.97438 * 18 17 16 20 20 C 1.34657 * 110.29827 * 359.74944 * 18 17 16 21 21 N 1.46505 * 109.46504 * 76.29307 * 9 8 3 22 22 C 1.36936 * 120.00054 * 64.09697 * 21 9 8 23 23 H 1.08007 * 119.99780 * 354.60549 * 22 21 9 24 24 C 1.38814 * 120.00306 * 174.60622 * 22 21 9 25 25 N 1.31617 * 120.00104 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99644 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47092 * 90.00210 * 26 24 22 28 28 H 1.48501 * 109.47230 * 210.00019 * 26 24 22 29 29 H 1.48495 * 109.47446 * 330.00366 * 26 24 22 30 30 H 1.09001 * 109.47464 * 65.07176 * 1 2 3 31 31 H 1.09004 * 109.47487 * 185.07792 * 1 2 3 32 32 H 1.09005 * 109.46787 * 305.07077 * 1 2 3 33 33 H 1.09003 * 109.46529 * 239.99182 * 2 1 3 34 34 H 1.09003 * 109.46770 * 120.00373 * 2 1 3 35 35 H 1.08002 * 120.00391 * 0.03771 * 4 3 2 36 36 H 1.07996 * 120.00176 * 179.76390 * 5 4 3 37 37 H 1.08002 * 120.00035 * 179.97438 * 6 5 4 38 38 H 1.07998 * 119.99987 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47199 * 302.54031 * 11 9 8 40 40 H 1.08996 * 109.47114 * 62.54363 * 11 9 8 41 41 H 0.97004 * 119.99499 * 0.02562 * 12 11 9 42 42 H 1.08001 * 126.82932 * 359.96376 * 16 15 13 43 43 H 1.08006 * 125.57398 * 180.02562 * 17 16 15 44 44 H 1.09002 * 109.46861 * 90.02919 * 19 18 17 45 45 H 1.09000 * 109.47213 * 210.02709 * 19 18 17 46 46 H 1.09002 * 109.47257 * 330.02533 * 19 18 17 47 47 H 1.08002 * 125.80678 * 180.28683 * 20 18 17 48 48 H 0.96994 * 120.00055 * 244.09301 * 21 9 8 49 49 H 0.96993 * 120.00333 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3407 2.0449 -1.1946 5 6 2.8069 3.3461 -1.1942 6 6 2.9599 4.0252 0.0003 7 6 2.6462 3.4032 1.1940 8 6 2.1799 2.1016 1.1937 9 6 1.8379 1.4234 2.4953 10 1 0.8990 0.8805 2.3863 11 6 1.6939 2.4759 3.5963 12 7 1.4213 1.8122 4.8736 13 6 1.2556 2.5455 5.9922 14 8 1.3319 3.7583 5.9411 15 6 0.9810 1.8784 7.2760 16 6 0.8574 0.4358 7.5112 17 6 0.6068 0.2867 8.8240 18 7 0.5670 1.5192 9.4081 19 6 0.3173 1.7638 10.8308 20 6 0.7948 2.4784 8.4909 21 7 2.9055 0.4858 2.8525 22 6 4.1637 0.9524 3.1249 23 1 4.3918 1.9998 2.9921 24 6 5.1462 0.0794 3.5717 25 7 6.3557 0.5279 3.8330 26 14 4.7515 -1.7318 3.8020 27 1 5.0261 -2.4627 2.5388 28 1 5.5961 -2.2881 4.8894 29 1 3.3187 -1.8845 4.1607 30 1 -0.3634 0.4331 -0.9319 31 1 -0.3634 -1.0236 0.0910 32 1 -0.3633 0.5905 0.8411 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2208 1.5145 -2.1277 36 1 3.0513 3.8323 -2.1270 37 1 3.3247 5.0418 0.0006 38 1 2.7654 3.9338 2.1271 39 1 2.6178 3.0488 3.6745 40 1 0.8700 3.1465 3.3523 41 1 1.3601 0.8449 4.9142 42 1 0.9492 -0.3502 6.7762 43 1 0.4610 -0.6547 9.3330 44 1 1.2645 1.7691 11.3703 45 1 -0.1756 2.7283 10.9527 46 1 -0.3227 0.9759 11.2281 47 1 0.8240 3.5411 8.6818 48 1 2.7210 -0.4654 2.8962 49 1 7.0423 -0.0822 4.1448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724508317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:27 Heat of formation + Delta-G solvation = 53.753384 kcal Electronic energy + Delta-G solvation = -29876.876862 eV Core-core repulsion = 25998.128534 eV Total energy + Delta-G solvation = -3878.748328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.08445 -39.51498 -38.42470 -35.88314 -33.85588 -33.26290 -32.70920 -31.73751 -30.13147 -29.09733 -28.94406 -27.67894 -26.31177 -24.34355 -23.51395 -22.34232 -22.01197 -20.44065 -19.94694 -19.62767 -19.10208 -18.00033 -17.72488 -16.07613 -15.54494 -15.45561 -15.27103 -15.11933 -14.79460 -14.46929 -14.21901 -14.05136 -13.91582 -13.38930 -13.14297 -13.06973 -13.02827 -12.73264 -12.65723 -12.58888 -12.44800 -12.41418 -11.98948 -11.84327 -11.72503 -11.46572 -11.34258 -10.98665 -10.87679 -10.73573 -10.46885 -10.30823 -9.94125 -9.53541 -9.39500 -8.96601 -8.57297 -8.36795 -8.24651 -8.09794 -8.04311 -7.32405 -5.73572 -3.12271 1.92004 1.96103 2.03055 2.54983 2.82874 3.33614 3.37081 3.44765 3.94199 4.10510 4.28450 4.56796 4.58907 4.90900 4.92765 5.06499 5.14574 5.15136 5.25022 5.33244 5.39911 5.42604 5.50387 5.53907 5.60694 5.61448 5.66909 5.72867 5.87445 5.88315 6.00434 6.01097 6.09641 6.17012 6.21533 6.28961 6.36781 6.44323 6.60009 6.66976 6.71527 6.85024 7.00416 7.02360 7.08870 7.20856 7.26184 7.29178 7.57133 7.98439 8.25923 8.42926 8.93616 9.18328 9.89733 10.05841 11.44424 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003672 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.236858 B = 7622.886957 C = 8699.176734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.066 4.066 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.064 4.064 9 C 0.203 3.797 10 H 0.072 0.928 11 C 0.113 3.887 12 N -0.699 5.699 13 C 0.588 3.412 14 O -0.567 6.567 15 C -0.222 4.222 16 C -0.164 4.164 17 C -0.024 4.024 18 N -0.451 5.451 19 C 0.071 3.929 20 C 0.066 3.934 21 N -0.733 5.733 22 C -0.235 4.235 23 H 0.093 0.907 24 C 0.010 3.990 25 N -0.929 5.929 26 Si 0.878 3.122 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.399 0.601 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.173 0.827 48 H 0.362 0.638 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 -0.313 4.158 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 C -0.067 4.067 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.067 4.067 9 C 0.093 3.907 10 H 0.090 0.910 11 C -0.012 4.012 12 N -0.347 5.347 13 C 0.376 3.624 14 O -0.448 6.448 15 C -0.232 4.232 16 C -0.188 4.188 17 C -0.150 4.150 18 N -0.128 5.128 19 C -0.071 4.071 20 C -0.068 4.068 21 N -0.374 5.374 22 C -0.365 4.365 23 H 0.110 0.890 24 C -0.185 4.185 25 N -0.577 5.577 26 Si 0.708 3.292 27 H -0.213 1.213 28 H -0.220 1.220 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.233 0.767 42 H 0.162 0.838 43 H 0.181 0.819 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.190 0.810 48 H 0.196 0.804 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.397 0.676 4.533 16.065 hybrid contribution 0.284 -1.857 0.167 1.886 sum -15.113 -1.181 4.700 15.871 Atomic orbital electron populations 1.21759 0.95419 1.01207 1.01828 1.20554 0.95308 0.93522 1.03186 1.19543 0.99137 0.95495 0.92507 1.20865 1.01221 0.95178 0.97054 1.20941 1.01234 0.95095 0.97584 1.21035 1.00970 0.99711 0.92782 1.21186 0.98225 0.94976 0.98031 1.20280 0.97702 0.93488 0.95190 1.19332 0.91724 0.90606 0.89025 0.90967 1.21827 1.00734 0.95557 0.83102 1.45445 1.71310 1.10396 1.07586 1.17279 0.76123 0.86157 0.82829 1.90717 1.53556 1.13893 1.86617 1.20465 1.15710 0.93468 0.93538 1.22093 1.06481 0.94831 0.95404 1.21675 1.11156 0.88222 0.93933 1.43558 1.54883 1.06242 1.08096 1.22065 1.02590 1.03586 0.78821 1.21732 1.02936 0.94457 0.87719 1.42734 1.07902 1.03726 1.83077 1.18927 0.84873 0.96122 1.36571 0.88973 1.24634 0.95706 0.97085 1.01109 1.69691 1.02375 1.34052 1.51535 0.86669 0.77394 0.87505 0.77590 1.21336 1.21980 1.20204 0.93004 0.92857 0.92467 0.91784 0.90096 0.87073 0.87075 0.86859 0.85879 0.90527 0.92600 0.76671 0.83753 0.81873 0.90820 0.89776 0.89830 0.81007 0.80442 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.73 37.16 0.36 -1.37 16 2 C -0.09 -1.29 5.42 -27.88 -0.15 -1.44 16 3 C -0.07 -1.11 5.13 -104.63 -0.54 -1.64 16 4 C -0.13 -1.95 9.69 -39.58 -0.38 -2.33 16 5 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 6 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 7 C -0.11 -1.92 8.98 -39.58 -0.36 -2.27 16 8 C -0.06 -1.15 4.89 -104.63 -0.51 -1.66 16 9 C 0.20 3.65 2.21 -69.08 -0.15 3.50 16 10 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16 11 C 0.11 2.13 3.84 -4.04 -0.02 2.12 16 12 N -0.70 -12.87 5.40 -61.44 -0.33 -13.20 16 13 C 0.59 11.45 7.81 -12.60 -0.10 11.35 16 14 O -0.57 -12.62 16.91 5.25 0.09 -12.53 16 15 C -0.22 -3.67 6.29 -103.35 -0.65 -4.32 16 16 C -0.16 -2.33 10.56 -37.50 -0.40 -2.73 16 17 C -0.02 -0.28 11.34 -16.83 -0.19 -0.47 16 18 N -0.45 -5.03 3.09 -124.53 -0.38 -5.42 16 19 C 0.07 0.45 11.03 59.85 0.66 1.11 16 20 C 0.07 0.92 11.12 -16.84 -0.19 0.74 16 21 N -0.73 -15.57 3.90 -54.55 -0.21 -15.79 16 22 C -0.24 -6.22 9.26 -15.06 -0.14 -6.36 16 23 H 0.09 2.72 7.31 -52.48 -0.38 2.34 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 25 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 26 Si 0.88 21.21 27.68 -169.99 -4.71 16.51 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.01 6.60 56.52 0.37 -5.64 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.69 6.87 -51.93 -0.36 0.34 16 33 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.08 1.30 6.07 -51.93 -0.31 0.98 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.12 2.27 5.90 -52.49 -0.31 1.96 16 39 H 0.08 1.68 5.74 -51.93 -0.30 1.38 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.40 6.85 7.35 -40.82 -0.30 6.55 16 42 H 0.14 1.90 7.70 -52.49 -0.40 1.50 16 43 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 46 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 47 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 48 H 0.36 7.48 5.47 -40.82 -0.22 7.26 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -35.02 398.71 -9.54 -44.56 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -7.14 Total: 18.45 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.64 Total: -10.46 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.15 Total: -62.54 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.02 -9.54 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724508317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.317 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds