Wall clock time and date at job start Wed Apr 1 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47321 * 2 1 4 4 C 1.38260 * 119.99612 * 266.04684 * 3 2 1 5 5 C 1.38214 * 119.99883 * 180.27858 * 4 3 2 6 6 C 1.38260 * 119.99885 * 359.74225 * 5 4 3 7 7 C 1.38215 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.38207 * 120.00105 * 85.79069 * 3 2 1 9 9 C 1.50700 * 120.00390 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.46806 * 316.30060 * 9 8 3 11 11 C 1.52995 * 109.47361 * 196.29267 * 9 8 3 12 12 N 1.46504 * 109.47087 * 182.54095 * 11 9 8 13 13 C 1.34773 * 119.99969 * 180.02562 * 12 11 9 14 14 O 1.21627 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.47260 * 119.99933 * 179.97438 * 13 12 11 16 16 C 1.46694 * 126.94246 * 0.02562 * 15 13 12 17 17 C 1.34481 * 106.33257 * 179.97438 * 16 15 13 18 18 N 1.36448 * 108.85903 * 0.02562 * 17 16 15 19 19 C 1.46500 * 124.85128 * 179.97438 * 18 17 16 20 20 C 1.34657 * 110.29827 * 359.74944 * 18 17 16 21 21 N 1.46505 * 109.46504 * 76.29307 * 9 8 3 22 22 C 1.36936 * 120.00054 * 64.09697 * 21 9 8 23 23 H 1.08007 * 119.99780 * 354.60549 * 22 21 9 24 24 C 1.38814 * 120.00306 * 174.60622 * 22 21 9 25 25 N 1.31617 * 120.00104 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99644 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47092 * 90.00210 * 26 24 22 28 28 H 1.48501 * 109.47230 * 210.00019 * 26 24 22 29 29 H 1.48495 * 109.47446 * 330.00366 * 26 24 22 30 30 H 1.09001 * 109.47464 * 65.07176 * 1 2 3 31 31 H 1.09004 * 109.47487 * 185.07792 * 1 2 3 32 32 H 1.09005 * 109.46787 * 305.07077 * 1 2 3 33 33 H 1.09003 * 109.46529 * 239.99182 * 2 1 3 34 34 H 1.09003 * 109.46770 * 120.00373 * 2 1 3 35 35 H 1.08002 * 120.00391 * 0.03771 * 4 3 2 36 36 H 1.07996 * 120.00176 * 179.76390 * 5 4 3 37 37 H 1.08002 * 120.00035 * 179.97438 * 6 5 4 38 38 H 1.07998 * 119.99987 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47199 * 302.54031 * 11 9 8 40 40 H 1.08996 * 109.47114 * 62.54363 * 11 9 8 41 41 H 0.97004 * 119.99499 * 0.02562 * 12 11 9 42 42 H 1.08001 * 126.82932 * 359.96376 * 16 15 13 43 43 H 1.08006 * 125.57398 * 180.02562 * 17 16 15 44 44 H 1.09002 * 109.46861 * 90.02919 * 19 18 17 45 45 H 1.09000 * 109.47213 * 210.02709 * 19 18 17 46 46 H 1.09002 * 109.47257 * 330.02533 * 19 18 17 47 47 H 1.08002 * 125.80678 * 180.28683 * 20 18 17 48 48 H 0.96994 * 120.00055 * 244.09301 * 21 9 8 49 49 H 0.96993 * 120.00333 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3407 2.0449 -1.1946 5 6 2.8069 3.3461 -1.1942 6 6 2.9599 4.0252 0.0003 7 6 2.6462 3.4032 1.1940 8 6 2.1799 2.1016 1.1937 9 6 1.8379 1.4234 2.4953 10 1 0.8990 0.8805 2.3863 11 6 1.6939 2.4759 3.5963 12 7 1.4213 1.8122 4.8736 13 6 1.2556 2.5455 5.9922 14 8 1.3319 3.7583 5.9411 15 6 0.9810 1.8784 7.2760 16 6 0.8574 0.4358 7.5112 17 6 0.6068 0.2867 8.8240 18 7 0.5670 1.5192 9.4081 19 6 0.3173 1.7638 10.8308 20 6 0.7948 2.4784 8.4909 21 7 2.9055 0.4858 2.8525 22 6 4.1637 0.9524 3.1249 23 1 4.3918 1.9998 2.9921 24 6 5.1462 0.0794 3.5717 25 7 6.3557 0.5279 3.8330 26 14 4.7515 -1.7318 3.8020 27 1 5.0261 -2.4627 2.5388 28 1 5.5961 -2.2881 4.8894 29 1 3.3187 -1.8845 4.1607 30 1 -0.3634 0.4331 -0.9319 31 1 -0.3634 -1.0236 0.0910 32 1 -0.3633 0.5905 0.8411 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2208 1.5145 -2.1277 36 1 3.0513 3.8323 -2.1270 37 1 3.3247 5.0418 0.0006 38 1 2.7654 3.9338 2.1271 39 1 2.6178 3.0488 3.6745 40 1 0.8700 3.1465 3.3523 41 1 1.3601 0.8449 4.9142 42 1 0.9492 -0.3502 6.7762 43 1 0.4610 -0.6547 9.3330 44 1 1.2645 1.7691 11.3703 45 1 -0.1756 2.7283 10.9527 46 1 -0.3227 0.9759 11.2281 47 1 0.8240 3.5411 8.6818 48 1 2.7210 -0.4654 2.8962 49 1 7.0423 -0.0822 4.1448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724508317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:26 Heat of formation + Delta-G solvation = 31.696598 kcal Electronic energy + Delta-G solvation = -29877.833316 eV Core-core repulsion = 25998.128534 eV Total energy + Delta-G solvation = -3879.704782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09089 -40.89637 -39.88225 -37.49132 -35.16894 -34.85680 -33.86433 -33.29948 -31.82059 -30.19961 -30.11560 -28.99757 -27.33887 -26.03228 -24.67452 -23.90609 -23.28707 -21.64591 -21.18719 -20.94309 -20.39246 -19.97513 -18.82703 -17.48613 -16.86623 -16.78867 -16.64155 -16.28393 -16.26578 -15.95878 -15.66161 -15.46663 -14.98173 -14.81808 -14.47649 -14.32557 -14.23587 -14.01319 -13.90396 -13.85117 -13.77813 -13.26452 -13.18975 -13.04385 -12.93246 -12.90831 -12.84274 -12.54714 -12.36298 -12.07168 -11.99023 -11.72303 -11.66192 -11.30177 -11.01765 -10.85818 -9.97594 -9.60664 -9.46456 -9.42261 -9.24934 -9.21423 -7.92007 -5.28175 0.60778 0.63488 0.82176 1.39865 1.45366 1.52134 1.54667 1.96734 2.54827 2.55416 2.70135 2.94753 3.38782 3.71705 3.89155 3.99425 4.03959 4.07034 4.08939 4.10949 4.19851 4.32374 4.35877 4.41128 4.44510 4.48403 4.61566 4.61988 4.72091 4.75241 4.77194 4.78795 4.88469 5.03921 5.05314 5.15198 5.18796 5.20173 5.29240 5.36474 5.51515 5.60970 5.71262 5.77383 5.78825 5.87188 5.94059 6.08834 6.28123 6.28779 6.39119 6.79293 7.14614 7.43974 7.83174 8.06042 9.29930 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003672 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.236858 B = 7622.886957 C = 8699.176734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.075 4.075 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.130 4.130 8 C -0.087 4.087 9 C 0.211 3.789 10 H 0.105 0.895 11 C 0.123 3.877 12 N -0.696 5.696 13 C 0.579 3.421 14 O -0.609 6.609 15 C -0.265 4.265 16 C -0.190 4.190 17 C -0.006 4.006 18 N -0.443 5.443 19 C 0.062 3.938 20 C 0.066 3.934 21 N -0.728 5.728 22 C -0.200 4.200 23 H 0.048 0.952 24 C -0.065 4.065 25 N -0.989 5.989 26 Si 0.948 3.052 27 H -0.284 1.284 28 H -0.308 1.308 29 H -0.234 1.234 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.406 0.594 42 H 0.149 0.851 43 H 0.204 0.796 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.179 0.821 48 H 0.371 0.629 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 -2.933 4.225 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.075 4.075 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.090 4.090 9 C 0.102 3.898 10 H 0.122 0.878 11 C -0.003 4.003 12 N -0.344 5.344 13 C 0.369 3.631 14 O -0.493 6.493 15 C -0.276 4.276 16 C -0.213 4.213 17 C -0.133 4.133 18 N -0.117 5.117 19 C -0.078 4.078 20 C -0.071 4.071 21 N -0.370 5.370 22 C -0.331 4.331 23 H 0.066 0.934 24 C -0.256 4.256 25 N -0.641 5.641 26 Si 0.776 3.224 27 H -0.211 1.211 28 H -0.236 1.236 29 H -0.158 1.158 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.121 0.879 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.242 0.758 42 H 0.167 0.833 43 H 0.221 0.779 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.130 0.870 47 H 0.196 0.804 48 H 0.206 0.794 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.238 -1.964 4.600 18.911 hybrid contribution 1.091 -0.879 0.151 1.409 sum -17.146 -2.843 4.751 18.018 Atomic orbital electron populations 1.21719 0.93238 1.02459 1.02192 1.20603 0.97165 0.91786 1.03036 1.19895 0.98718 0.96659 0.92261 1.21266 1.00204 0.95377 0.97821 1.21340 0.99811 0.95172 0.98205 1.21293 1.01050 1.00693 0.92732 1.21236 0.99727 0.95744 0.98217 1.20277 0.99257 0.93735 0.95687 1.19447 0.91805 0.89975 0.88566 0.87759 1.21645 0.98961 0.95783 0.83870 1.45427 1.71000 1.10683 1.07319 1.17890 0.75247 0.85880 0.84081 1.90671 1.55638 1.15671 1.87358 1.20434 1.19033 0.95191 0.92899 1.22255 1.08320 0.93636 0.97102 1.22258 1.08326 0.89578 0.93160 1.43905 1.52759 1.05493 1.09575 1.22457 1.03953 1.05569 0.75802 1.21867 1.02148 0.95347 0.87772 1.42564 1.06738 1.04635 1.83040 1.18678 0.86697 0.94001 1.33715 0.93435 1.25445 0.95481 1.02415 1.02227 1.69914 1.03949 1.35757 1.54437 0.85513 0.79184 0.80808 0.76908 1.21057 1.23564 1.15770 0.92007 0.90968 0.92955 0.90538 0.91591 0.84136 0.83930 0.85376 0.87888 0.94729 0.91858 0.75822 0.83291 0.77885 0.89792 0.88371 0.87049 0.80414 0.79446 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.73 71.98 0.70 -2.17 16 2 C -0.09 -2.36 5.42 29.85 0.16 -2.20 16 3 C -0.07 -2.40 5.13 -19.87 -0.10 -2.50 16 4 C -0.13 -3.73 9.69 22.27 0.22 -3.51 16 5 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 6 C -0.14 -4.64 10.05 22.27 0.22 -4.42 16 7 C -0.13 -5.01 8.98 22.27 0.20 -4.81 16 8 C -0.09 -3.19 4.89 -19.87 -0.10 -3.29 16 9 C 0.21 7.65 2.21 44.24 0.10 7.75 16 10 H 0.10 3.13 6.16 -2.39 -0.01 3.11 16 11 C 0.12 4.92 3.84 86.38 0.33 5.25 16 12 N -0.70 -26.68 5.40 -466.54 -2.52 -29.20 16 13 C 0.58 23.74 7.81 86.62 0.68 24.41 16 14 O -0.61 -29.02 16.91 -4.12 -0.07 -29.09 16 15 C -0.27 -8.93 6.29 -19.04 -0.12 -9.05 16 16 C -0.19 -5.17 10.56 23.62 0.25 -4.92 16 17 C -0.01 -0.13 11.34 83.11 0.94 0.81 16 18 N -0.44 -8.78 3.09 -547.89 -1.69 -10.47 16 19 C 0.06 0.57 11.03 127.77 1.41 1.97 16 20 C 0.07 1.81 11.12 83.92 0.93 2.74 16 21 N -0.73 -30.96 3.90 -326.49 -1.27 -32.24 16 22 C -0.20 -10.97 9.26 84.03 0.78 -10.19 16 23 H 0.05 3.02 7.31 -2.91 -0.02 3.00 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 25 N -0.99 -64.54 13.97 21.65 0.30 -64.24 16 26 Si 0.95 44.02 27.68 68.60 1.90 45.92 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 29 H -0.23 -9.12 6.60 99.48 0.66 -8.47 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.13 6.87 -2.38 -0.02 1.11 16 33 H 0.08 1.84 8.06 -2.39 -0.02 1.82 16 34 H 0.07 1.96 6.07 -2.39 -0.01 1.94 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.10 4.25 5.90 -2.91 -0.02 4.23 16 39 H 0.03 1.67 5.74 -2.39 -0.01 1.66 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.41 14.07 7.35 -92.71 -0.68 13.39 16 42 H 0.15 3.74 7.70 -2.91 -0.02 3.72 16 43 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 0.66 8.13 -2.39 -0.02 0.64 16 46 H 0.11 0.46 8.13 -2.39 -0.02 0.44 16 47 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 48 H 0.37 14.66 5.47 -92.71 -0.51 14.15 16 49 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -82.47 398.71 3.68 -78.79 By element: Atomic # 1 Polarization: 51.71 SS G_CDS: -0.26 Total: 51.45 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 7.29 Total: -10.92 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -5.18 Total: -136.15 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.07 Total: -29.09 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Total: -82.47 3.68 -78.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724508317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.487 kcal (2) G-P(sol) polarization free energy of solvation -82.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds