Wall clock time and date at job start Wed Apr 1 2020 00:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36614 * 120.91845 * 2 1 4 4 C 1.39279 * 119.90630 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.76939 * 359.97106 * 4 3 2 6 6 C 1.33615 * 121.39229 * 0.02562 * 5 4 3 7 7 C 1.40767 * 120.83307 * 180.02562 * 6 5 4 8 8 C 1.35697 * 120.11354 * 179.67220 * 7 6 5 9 9 C 1.40638 * 120.92264 * 0.56883 * 8 7 6 10 10 C 1.47765 * 119.80110 * 179.73221 * 9 8 7 11 11 O 1.21561 * 119.99727 * 202.54635 * 10 9 8 12 12 N 1.34780 * 120.00245 * 22.54145 * 10 9 8 13 13 C 1.46501 * 119.99721 * 4.71920 * 12 10 9 14 14 C 1.46493 * 120.00353 * 184.71858 * 12 10 9 15 15 C 1.52996 * 109.47252 * 270.00635 * 14 12 10 16 16 C 1.52999 * 109.47356 * 179.97438 * 15 14 12 17 17 N 1.46502 * 109.47357 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00064 * 89.99823 * 17 16 15 19 19 C 1.36936 * 119.99823 * 269.99742 * 17 16 15 20 20 H 1.08002 * 120.00302 * 24.07081 * 19 17 16 21 21 C 1.38811 * 120.00039 * 204.06557 * 19 17 16 22 22 N 1.31625 * 120.00127 * 14.81720 * 21 19 17 23 23 Si 1.86799 * 120.00133 * 194.81730 * 21 19 17 24 24 H 1.48506 * 109.47325 * 89.99986 * 23 21 19 25 25 H 1.48498 * 109.47325 * 210.00280 * 23 21 19 26 26 H 1.48503 * 109.47286 * 330.00212 * 23 21 19 27 27 C 1.38547 * 120.39510 * 359.44865 * 9 8 7 28 28 C 1.40184 * 119.40201 * 0.26033 * 27 9 8 29 29 H 1.08999 * 109.47332 * 270.01758 * 1 2 3 30 30 H 1.08999 * 109.47346 * 30.02293 * 1 2 3 31 31 H 1.09005 * 109.47043 * 150.02109 * 1 2 3 32 32 H 1.08001 * 120.04951 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.11136 * 180.02562 * 4 3 2 34 34 H 1.08003 * 119.94452 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.54051 * 180.29273 * 8 7 6 36 36 H 1.09001 * 109.47308 * 264.25083 * 13 12 10 37 37 H 1.09003 * 109.47224 * 24.25223 * 13 12 10 38 38 H 1.08998 * 109.47157 * 144.24759 * 13 12 10 39 39 H 1.09002 * 109.47557 * 150.00055 * 14 12 10 40 40 H 1.09008 * 109.46809 * 30.00204 * 14 12 10 41 41 H 1.09008 * 109.46861 * 299.99537 * 15 14 12 42 42 H 1.09003 * 109.47820 * 59.99411 * 15 14 12 43 43 H 1.08997 * 109.46988 * 299.99223 * 16 15 14 44 44 H 1.09002 * 109.47496 * 59.99393 * 16 15 14 45 45 H 1.08999 * 109.47366 * 93.57299 * 18 17 16 46 46 H 1.09004 * 109.47203 * 213.56972 * 18 17 16 47 47 H 1.09000 * 109.47147 * 333.56697 * 18 17 16 48 48 H 0.96991 * 119.99511 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.29544 * 180.27812 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2721 0.0204 -0.0005 6 6 3.6479 -1.1609 -0.0004 7 6 4.3796 -2.3635 0.0002 8 6 3.7307 -3.5553 0.0069 9 6 2.3255 -3.6130 0.0015 10 6 1.6444 -4.9244 0.0031 11 8 0.5030 -5.0169 -0.4049 12 7 2.2886 -6.0179 0.4567 13 6 3.6248 -5.8899 1.0436 14 6 1.6528 -7.3343 0.3630 15 6 0.8410 -7.6001 1.6322 16 6 0.1764 -8.9747 1.5341 17 7 -0.6005 -9.2296 2.7497 18 6 -2.0071 -8.8261 2.8182 19 6 -0.0117 -9.8449 3.8221 20 1 1.0596 -9.7975 3.9507 21 6 -0.7918 -10.5295 4.7438 22 7 -2.0367 -10.8403 4.4506 23 14 -0.0747 -11.0097 6.4005 24 1 -0.3159 -9.9191 7.3792 25 1 -0.7246 -12.2564 6.8786 26 1 1.3864 -11.2353 6.2610 27 6 1.5760 -2.4478 0.0005 28 6 2.2308 -1.2083 -0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6848 2.1163 -0.0004 33 1 4.1435 2.0815 -0.0001 34 1 5.4593 -2.3377 0.0002 35 1 4.3012 -4.4722 0.0121 36 1 4.3773 -6.0962 0.2825 37 1 3.7597 -4.8769 1.4228 38 1 3.7317 -6.6014 1.8624 39 1 2.4196 -8.1014 0.2547 40 1 0.9911 -7.3573 -0.5030 41 1 1.5027 -7.5771 2.4982 42 1 0.0741 -6.8331 1.7405 43 1 -0.4854 -8.9973 0.6683 44 1 0.9429 -9.7421 1.4256 45 1 -2.6400 -9.6634 2.5240 46 1 -2.2503 -8.5276 3.8379 47 1 -2.1777 -7.9871 2.1436 48 1 -2.5816 -11.3189 5.0946 49 1 0.4970 -2.4941 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724849969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:26 Heat of formation + Delta-G solvation = 62.610735 kcal Electronic energy + Delta-G solvation = -28759.240687 eV Core-core repulsion = 24880.876442 eV Total energy + Delta-G solvation = -3878.364245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41893 -40.00991 -37.12346 -36.34551 -35.42661 -35.00668 -32.57456 -31.17814 -30.76341 -29.94517 -28.26790 -27.30458 -26.07768 -25.66792 -24.22334 -23.87219 -22.22206 -21.36803 -20.24872 -19.99285 -18.81514 -17.57215 -17.02123 -16.64835 -16.04450 -15.98498 -15.48095 -15.00196 -14.87582 -14.74279 -14.52806 -14.15776 -14.09957 -13.76782 -13.48567 -13.40565 -13.21766 -13.17700 -12.90651 -12.80628 -12.59214 -12.36593 -12.09611 -11.94840 -11.65208 -11.29854 -11.19938 -10.96524 -10.80025 -10.68387 -10.53752 -10.40993 -10.11835 -9.94043 -9.86005 -9.82877 -9.69831 -9.11553 -8.76534 -8.53445 -8.43468 -6.65777 -5.67902 -3.14570 -0.10406 0.33139 1.55627 2.17031 2.87869 3.11546 3.39897 3.45860 3.47364 3.74810 3.89597 4.10709 4.22751 4.25066 4.39418 4.53507 4.65291 4.68499 4.78272 4.99150 5.02630 5.07907 5.13566 5.15301 5.28822 5.31611 5.42154 5.49334 5.53132 5.56134 5.57409 5.64537 5.67945 5.82075 5.90661 5.95774 6.03455 6.09205 6.15103 6.22244 6.40606 6.52832 6.63465 6.83844 6.85283 7.07736 7.32140 7.42550 7.53040 7.77080 7.84196 8.09980 8.45992 9.28712 9.93274 10.43937 11.37107 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.002108 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.610043 B =13282.492943 C =13545.172823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 C -0.188 4.188 4 C 0.143 3.857 5 N -0.484 5.484 6 C 0.146 3.854 7 C -0.103 4.103 8 C -0.096 4.096 9 C -0.129 4.129 10 C 0.554 3.446 11 O -0.530 6.530 12 N -0.606 5.606 13 C 0.059 3.941 14 C 0.117 3.883 15 C -0.151 4.151 16 C 0.155 3.845 17 N -0.602 5.602 18 C 0.162 3.838 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.906 5.906 23 Si 0.903 3.097 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C -0.029 4.029 28 C -0.114 4.114 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.029 0.971 46 H 0.038 0.962 47 H -0.001 1.001 48 H 0.252 0.748 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.555 23.510 -11.427 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.018 4.018 3 C -0.208 4.208 4 C -0.029 4.029 5 N -0.192 5.192 6 C 0.024 3.976 7 C -0.122 4.122 8 C -0.116 4.116 9 C -0.132 4.132 10 C 0.343 3.657 11 O -0.408 6.408 12 N -0.338 5.338 13 C -0.083 4.083 14 C -0.005 4.005 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.325 5.325 18 C 0.017 3.983 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.048 4.048 28 C -0.116 4.116 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.018 0.982 48 H 0.062 0.938 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.733 23.206 -11.538 28.875 hybrid contribution -0.477 -0.171 1.118 1.228 sum 12.256 23.035 -10.420 28.096 Atomic orbital electron populations 1.20970 0.89638 1.04076 1.03656 1.20280 0.96893 0.92000 0.92629 1.21771 0.95621 0.98825 1.04603 1.22997 0.91535 0.96487 0.91870 1.68074 1.39882 0.97713 1.13573 1.19028 0.89550 0.92648 0.96367 1.20715 1.00536 0.89744 1.01162 1.21921 0.93550 0.99681 0.96404 1.19969 0.93943 0.93720 1.05617 1.18239 0.85718 0.83688 0.78078 1.90799 1.17046 1.85521 1.47399 1.47787 1.17956 1.07875 1.60182 1.22500 0.83357 1.03859 0.98596 1.21643 0.97002 0.81548 1.00305 1.22604 0.99363 1.01372 0.95897 1.20625 0.94428 0.92769 0.89450 1.43867 1.08479 1.68228 1.11915 1.20758 0.84723 0.94722 0.98115 1.19150 0.92175 1.26308 1.00660 0.91625 1.25041 0.96637 0.98329 0.99820 1.70080 1.08099 1.42592 1.34306 0.86281 0.78329 0.77584 0.84492 1.21584 1.21779 1.20516 1.21467 1.00689 0.89736 0.92943 1.18669 0.94142 0.93924 1.04820 0.89710 0.90364 0.90238 0.84355 0.82261 0.84144 0.82486 0.91894 0.89503 0.90520 0.90520 0.90055 0.92225 0.92345 0.94572 0.93580 0.95299 0.94282 0.98232 0.93802 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.59 36.00 0.35 -0.47 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.70 16 3 C -0.19 -1.33 9.72 -39.78 -0.39 -1.71 16 4 C 0.14 1.11 11.14 -17.46 -0.19 0.92 16 5 N -0.48 -5.10 10.33 -10.92 -0.11 -5.21 16 6 C 0.15 1.60 6.61 -84.78 -0.56 1.04 16 7 C -0.10 -0.98 9.95 -39.54 -0.39 -1.37 16 8 C -0.10 -0.90 7.43 -39.59 -0.29 -1.19 16 9 C -0.13 -1.54 5.55 -104.98 -0.58 -2.12 16 10 C 0.55 8.03 7.50 -12.36 -0.09 7.94 16 11 O -0.53 -9.57 16.16 5.31 0.09 -9.49 16 12 N -0.61 -7.81 2.87 -182.73 -0.53 -8.34 16 13 C 0.06 0.53 8.67 59.85 0.52 1.05 16 14 C 0.12 1.67 5.40 -4.05 -0.02 1.65 16 15 C -0.15 -2.74 5.86 -26.73 -0.16 -2.89 16 16 C 0.16 3.27 5.65 -4.04 -0.02 3.24 16 17 N -0.60 -15.74 2.92 -181.12 -0.53 -16.26 16 18 C 0.16 4.20 8.99 59.84 0.54 4.74 16 19 C -0.25 -7.10 9.63 -15.06 -0.15 -7.24 16 20 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 21 C 0.00 0.00 5.05 -17.43 -0.09 -0.09 16 22 N -0.91 -27.15 10.89 55.49 0.60 -26.55 16 23 Si 0.90 22.16 29.58 -169.99 -5.03 17.13 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.03 -0.33 8.88 -38.74 -0.34 -0.67 16 28 C -0.11 -1.22 5.74 -106.82 -0.61 -1.83 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.08 0.55 6.51 -51.93 -0.34 0.21 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.16 1.10 4.14 -52.49 -0.22 0.88 16 36 H 0.06 0.40 7.17 -51.93 -0.37 0.03 16 37 H 0.09 0.71 4.95 -51.93 -0.26 0.45 16 38 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.08 1.24 7.49 -51.92 -0.39 0.85 16 41 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 44 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 45 H 0.03 0.80 7.41 -51.93 -0.38 0.42 16 46 H 0.04 1.07 7.36 -51.93 -0.38 0.69 16 47 H 0.00 -0.02 8.04 -51.93 -0.42 -0.44 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.14 1.63 6.17 -52.49 -0.32 1.30 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -35.40 395.79 -9.91 -45.31 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.26 Total: -2.85 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.11 Total: 0.28 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.56 Total: -56.36 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.40 -9.91 -45.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724849969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.925 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds