Wall clock time and date at job start Wed Apr 1 2020 00:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36614 * 120.91845 * 2 1 4 4 C 1.39279 * 119.90630 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.76939 * 359.97106 * 4 3 2 6 6 C 1.33615 * 121.39229 * 0.02562 * 5 4 3 7 7 C 1.40767 * 120.83307 * 180.02562 * 6 5 4 8 8 C 1.35697 * 120.11354 * 179.67220 * 7 6 5 9 9 C 1.40638 * 120.92264 * 0.56883 * 8 7 6 10 10 C 1.47765 * 119.80110 * 179.73221 * 9 8 7 11 11 O 1.21561 * 119.99727 * 202.54635 * 10 9 8 12 12 N 1.34780 * 120.00245 * 22.54145 * 10 9 8 13 13 C 1.46501 * 119.99721 * 4.71920 * 12 10 9 14 14 C 1.46493 * 120.00353 * 184.71858 * 12 10 9 15 15 C 1.52996 * 109.47252 * 270.00635 * 14 12 10 16 16 C 1.52999 * 109.47356 * 179.97438 * 15 14 12 17 17 N 1.46502 * 109.47357 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00064 * 89.99823 * 17 16 15 19 19 C 1.36936 * 119.99823 * 269.99742 * 17 16 15 20 20 H 1.08002 * 120.00302 * 24.07081 * 19 17 16 21 21 C 1.38811 * 120.00039 * 204.06557 * 19 17 16 22 22 N 1.31625 * 120.00127 * 14.81720 * 21 19 17 23 23 Si 1.86799 * 120.00133 * 194.81730 * 21 19 17 24 24 H 1.48506 * 109.47325 * 89.99986 * 23 21 19 25 25 H 1.48498 * 109.47325 * 210.00280 * 23 21 19 26 26 H 1.48503 * 109.47286 * 330.00212 * 23 21 19 27 27 C 1.38547 * 120.39510 * 359.44865 * 9 8 7 28 28 C 1.40184 * 119.40201 * 0.26033 * 27 9 8 29 29 H 1.08999 * 109.47332 * 270.01758 * 1 2 3 30 30 H 1.08999 * 109.47346 * 30.02293 * 1 2 3 31 31 H 1.09005 * 109.47043 * 150.02109 * 1 2 3 32 32 H 1.08001 * 120.04951 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.11136 * 180.02562 * 4 3 2 34 34 H 1.08003 * 119.94452 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.54051 * 180.29273 * 8 7 6 36 36 H 1.09001 * 109.47308 * 264.25083 * 13 12 10 37 37 H 1.09003 * 109.47224 * 24.25223 * 13 12 10 38 38 H 1.08998 * 109.47157 * 144.24759 * 13 12 10 39 39 H 1.09002 * 109.47557 * 150.00055 * 14 12 10 40 40 H 1.09008 * 109.46809 * 30.00204 * 14 12 10 41 41 H 1.09008 * 109.46861 * 299.99537 * 15 14 12 42 42 H 1.09003 * 109.47820 * 59.99411 * 15 14 12 43 43 H 1.08997 * 109.46988 * 299.99223 * 16 15 14 44 44 H 1.09002 * 109.47496 * 59.99393 * 16 15 14 45 45 H 1.08999 * 109.47366 * 93.57299 * 18 17 16 46 46 H 1.09004 * 109.47203 * 213.56972 * 18 17 16 47 47 H 1.09000 * 109.47147 * 333.56697 * 18 17 16 48 48 H 0.96991 * 119.99511 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.29544 * 180.27812 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2721 0.0204 -0.0005 6 6 3.6479 -1.1609 -0.0004 7 6 4.3796 -2.3635 0.0002 8 6 3.7307 -3.5553 0.0069 9 6 2.3255 -3.6130 0.0015 10 6 1.6444 -4.9244 0.0031 11 8 0.5030 -5.0169 -0.4049 12 7 2.2886 -6.0179 0.4567 13 6 3.6248 -5.8899 1.0436 14 6 1.6528 -7.3343 0.3630 15 6 0.8410 -7.6001 1.6322 16 6 0.1764 -8.9747 1.5341 17 7 -0.6005 -9.2296 2.7497 18 6 -2.0071 -8.8261 2.8182 19 6 -0.0117 -9.8449 3.8221 20 1 1.0596 -9.7975 3.9507 21 6 -0.7918 -10.5295 4.7438 22 7 -2.0367 -10.8403 4.4506 23 14 -0.0747 -11.0097 6.4005 24 1 -0.3159 -9.9191 7.3792 25 1 -0.7246 -12.2564 6.8786 26 1 1.3864 -11.2353 6.2610 27 6 1.5760 -2.4478 0.0005 28 6 2.2308 -1.2083 -0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6848 2.1163 -0.0004 33 1 4.1435 2.0815 -0.0001 34 1 5.4593 -2.3377 0.0002 35 1 4.3012 -4.4722 0.0121 36 1 4.3773 -6.0962 0.2825 37 1 3.7597 -4.8769 1.4228 38 1 3.7317 -6.6014 1.8624 39 1 2.4196 -8.1014 0.2547 40 1 0.9911 -7.3573 -0.5030 41 1 1.5027 -7.5771 2.4982 42 1 0.0741 -6.8331 1.7405 43 1 -0.4854 -8.9973 0.6683 44 1 0.9429 -9.7421 1.4256 45 1 -2.6400 -9.6634 2.5240 46 1 -2.2503 -8.5276 3.8379 47 1 -2.1777 -7.9871 2.1436 48 1 -2.5816 -11.3189 5.0946 49 1 0.4970 -2.4941 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724849969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:25 Heat of formation + Delta-G solvation = 41.838883 kcal Electronic energy + Delta-G solvation = -28760.141422 eV Core-core repulsion = 24880.876442 eV Total energy + Delta-G solvation = -3879.264980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16820 -40.97593 -38.08731 -37.78158 -36.85368 -35.68157 -34.19003 -32.52865 -31.50583 -31.27863 -28.90777 -28.30358 -27.91618 -27.18905 -25.35094 -24.56891 -23.71358 -22.09658 -21.98715 -21.00464 -19.60681 -18.73389 -18.36849 -17.82757 -17.13844 -16.87366 -16.71648 -16.41034 -15.85196 -15.63689 -15.54269 -15.36688 -15.22484 -14.97979 -14.66696 -14.57629 -14.36719 -14.03899 -14.01589 -13.80392 -13.53039 -13.36071 -13.22099 -13.01949 -12.78427 -12.74051 -12.60819 -12.52892 -12.45361 -12.31794 -12.09012 -11.98004 -11.86844 -11.42538 -11.19861 -11.02631 -10.65273 -10.53396 -9.87040 -9.75261 -9.26042 -8.76309 -7.83420 -5.33642 -0.84168 -0.36218 0.81513 1.37416 1.45464 1.47603 1.56319 1.88503 2.20192 2.50820 3.02061 3.24851 3.29513 3.39016 3.47174 3.62942 3.68333 3.76245 3.93707 3.99324 4.04758 4.17277 4.31836 4.36452 4.43455 4.48689 4.52564 4.56310 4.63991 4.65984 4.73187 4.75903 4.81815 4.84800 4.87315 4.89389 4.91433 5.01154 5.09948 5.16224 5.18855 5.24326 5.32227 5.44478 5.49938 5.56047 5.60116 5.64171 5.75147 6.30035 6.32767 6.86902 7.02784 7.13209 7.85362 8.32440 9.20625 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.002108 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.610043 B =13282.492943 C =13545.172823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.024 4.024 3 C -0.180 4.180 4 C 0.144 3.856 5 N -0.509 5.509 6 C 0.127 3.873 7 C -0.104 4.104 8 C -0.090 4.090 9 C -0.146 4.146 10 C 0.549 3.451 11 O -0.579 6.579 12 N -0.605 5.605 13 C 0.051 3.949 14 C 0.125 3.875 15 C -0.130 4.130 16 C 0.152 3.848 17 N -0.622 5.622 18 C 0.177 3.823 19 C -0.260 4.260 20 H 0.075 0.925 21 C -0.059 4.059 22 N -0.941 5.941 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.263 1.263 27 C -0.038 4.038 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.173 0.827 33 H 0.195 0.805 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.028 0.972 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.006 0.994 46 H 0.014 0.986 47 H 0.021 0.979 48 H 0.248 0.752 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.472 25.273 -11.493 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.028 4.028 5 N -0.218 5.218 6 C 0.006 3.994 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.149 4.149 10 C 0.339 3.661 11 O -0.461 6.461 12 N -0.335 5.335 13 C -0.090 4.090 14 C 0.002 3.998 15 C -0.171 4.171 16 C 0.026 3.974 17 N -0.345 5.345 18 C 0.031 3.969 19 C -0.390 4.390 20 H 0.092 0.908 21 C -0.254 4.254 22 N -0.588 5.588 23 Si 0.799 3.201 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.187 1.187 27 C -0.058 4.058 28 C -0.134 4.134 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.191 0.809 33 H 0.211 0.789 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.032 0.968 47 H 0.039 0.961 48 H 0.057 0.943 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.718 24.985 -11.617 31.722 hybrid contribution -1.369 -0.561 1.083 1.833 sum 14.350 24.424 -10.534 30.223 Atomic orbital electron populations 1.21002 0.88536 1.04593 1.04037 1.20598 0.97916 0.91960 0.92765 1.22163 0.95523 0.99603 1.02656 1.23680 0.92283 0.96998 0.89794 1.68135 1.40488 0.98197 1.14985 1.19355 0.89802 0.93598 0.96637 1.20983 1.01493 0.89283 1.00456 1.22073 0.92251 1.00780 0.95800 1.19889 0.95179 0.92293 1.07513 1.18701 0.85255 0.84831 0.77325 1.90762 1.19219 1.86325 1.49759 1.47852 1.19193 1.06831 1.59643 1.22824 0.81832 1.04656 0.99713 1.21461 0.97484 0.83321 0.97486 1.22281 0.98625 0.98413 0.97818 1.20808 0.94398 0.94502 0.87681 1.44163 1.08673 1.68350 1.13323 1.20480 0.84990 0.94433 0.96953 1.19528 0.92681 1.25553 1.01288 0.90772 1.25897 0.97145 0.98925 1.03415 1.70248 1.09487 1.43798 1.35273 0.85201 0.78369 0.76715 0.79786 1.21592 1.22178 1.18692 1.21497 1.00414 0.90480 0.93377 1.18838 0.94580 0.94282 1.05660 0.89332 0.88095 0.91467 0.80927 0.78869 0.82139 0.79985 0.88359 0.88654 0.90167 0.87286 0.91193 0.92751 0.95326 0.94109 0.92486 0.97623 0.96764 0.96059 0.94298 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.59 71.23 0.68 -0.86 16 2 C -0.02 -0.40 5.92 -19.61 -0.12 -0.51 16 3 C -0.18 -2.08 9.72 22.14 0.22 -1.86 16 4 C 0.14 1.87 11.14 85.05 0.95 2.82 16 5 N -0.51 -9.85 10.33 -188.46 -1.95 -11.80 16 6 C 0.13 2.68 6.61 40.37 0.27 2.95 16 7 C -0.10 -1.81 9.95 22.30 0.22 -1.59 16 8 C -0.09 -1.55 7.43 22.27 0.17 -1.38 16 9 C -0.15 -3.49 5.55 -20.10 -0.11 -3.60 16 10 C 0.55 16.15 7.50 86.76 0.65 16.80 16 11 O -0.58 -21.98 16.16 -3.91 -0.06 -22.04 16 12 N -0.60 -14.93 2.87 -850.29 -2.44 -17.38 16 13 C 0.05 0.76 8.67 127.77 1.11 1.87 16 14 C 0.13 3.44 5.40 86.38 0.47 3.91 16 15 C -0.13 -4.69 5.86 30.59 0.18 -4.51 16 16 C 0.15 6.36 5.65 86.38 0.49 6.85 16 17 N -0.62 -32.82 2.92 -726.94 -2.12 -34.94 16 18 C 0.18 9.47 8.99 127.77 1.15 10.62 16 19 C -0.26 -14.59 9.63 84.03 0.81 -13.78 16 20 H 0.07 3.95 7.87 -2.91 -0.02 3.93 16 21 C -0.06 -3.39 5.05 84.86 0.43 -2.97 16 22 N -0.94 -57.69 10.89 21.65 0.24 -57.46 16 23 Si 0.97 45.69 29.58 68.60 2.03 47.72 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 27 C -0.04 -0.91 8.88 22.82 0.20 -0.71 16 28 C -0.13 -2.81 5.74 -21.29 -0.12 -2.93 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.07 0.99 6.51 -2.38 -0.02 0.97 16 32 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.18 2.02 4.14 -2.91 -0.01 2.01 16 36 H 0.10 0.85 7.17 -2.39 -0.02 0.83 16 37 H 0.10 1.32 4.95 -2.39 -0.01 1.31 16 38 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 39 H 0.11 2.32 8.07 -2.39 -0.02 2.30 16 40 H 0.07 2.12 7.49 -2.38 -0.02 2.10 16 41 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 44 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 45 H 0.01 0.32 7.41 -2.39 -0.02 0.30 16 46 H 0.01 0.79 7.36 -2.38 -0.02 0.77 16 47 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 48 H 0.25 14.70 8.31 -92.72 -0.77 13.93 16 49 H 0.13 3.35 6.17 -2.91 -0.02 3.33 16 Total: -1.00 -79.50 395.79 4.28 -75.22 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.96 Total: 9.55 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.63 Total: 11.12 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.27 Total: -121.57 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.50 4.28 -75.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724849969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.060 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds