Wall clock time and date at job start Wed Apr 1 2020 01:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 F 1.39902 * 109.47359 * 239.99742 * 2 1 3 5 5 C 1.50698 * 109.46723 * 119.99925 * 2 1 3 6 6 O 1.21282 * 119.99925 * 249.99761 * 5 2 1 7 7 N 1.34779 * 119.99861 * 70.00703 * 5 2 1 8 8 C 1.47211 * 121.35879 * 359.97438 * 7 5 2 9 9 C 1.52763 * 107.75826 * 121.93225 * 8 7 5 10 10 C 1.53149 * 110.83546 * 57.88335 * 9 8 7 11 11 H 1.09002 * 112.21101 * 70.60680 * 10 9 8 12 12 C 1.53933 * 110.88323 * 304.70328 * 10 9 8 13 13 H 1.09002 * 109.49884 * 171.14964 * 12 10 9 14 14 C 1.54178 * 102.28773 * 287.21950 * 12 10 9 15 15 C 1.54719 * 102.14446 * 322.30427 * 14 12 10 16 16 N 1.47631 * 107.20524 * 21.62714 * 15 14 12 17 17 C 1.46901 * 111.00076 * 125.56253 * 16 15 14 18 18 C 1.50701 * 109.47020 * 69.87634 * 17 16 15 19 19 O 1.21297 * 119.99947 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99896 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99846 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99999 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99744 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99695 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47059 * 90.00397 * 25 23 21 27 27 H 1.48504 * 109.46628 * 210.00370 * 25 23 21 28 28 H 1.48499 * 109.46944 * 330.00008 * 25 23 21 29 29 C 1.44807 * 121.77210 * 179.97438 * 7 5 2 30 30 H 1.08998 * 109.46987 * 300.00146 * 1 2 3 31 31 H 1.09002 * 109.46703 * 60.00161 * 1 2 3 32 32 H 1.08995 * 109.46927 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46965 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47044 * 299.99644 * 3 2 1 35 35 H 1.09002 * 109.46945 * 59.99605 * 3 2 1 36 36 H 1.09007 * 109.79904 * 2.37312 * 8 7 5 37 37 H 1.08993 * 109.80571 * 241.49921 * 8 7 5 38 38 H 1.09002 * 109.20382 * 297.53778 * 9 8 7 39 39 H 1.08998 * 109.16908 * 178.21151 * 9 8 7 40 40 H 1.08996 * 110.87498 * 80.46733 * 14 12 10 41 41 H 1.08998 * 110.86865 * 204.14423 * 14 12 10 42 42 H 1.09005 * 109.89571 * 141.02645 * 15 14 12 43 43 H 1.08997 * 109.89187 * 262.06006 * 15 14 12 44 44 H 1.08991 * 109.46867 * 189.87440 * 17 16 15 45 45 H 1.08999 * 109.46886 * 309.87930 * 17 16 15 46 46 H 0.97002 * 120.00337 * 359.97438 * 20 18 17 47 47 H 0.96998 * 119.99842 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.22616 * 111.48024 * 29 7 5 49 49 H 1.09009 * 107.97689 * 352.97189 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0322 -0.7104 1.2305 6 8 2.5731 -0.0816 2.1154 7 7 1.8806 -2.0445 1.3475 8 6 1.2284 -2.8368 0.2920 9 6 2.2220 -3.8995 -0.1741 10 6 2.6630 -4.7835 0.9962 11 1 1.8644 -5.4413 1.3394 12 6 3.2361 -3.9308 2.1425 13 1 3.3959 -4.5593 3.0186 14 6 4.5981 -3.4872 1.5722 15 6 5.0566 -4.7501 0.8050 16 7 3.8487 -5.5481 0.5158 17 6 3.7411 -5.8391 -0.9200 18 6 4.8186 -6.8151 -1.3168 19 8 5.5996 -7.2274 -0.4854 20 7 4.9151 -7.2291 -2.5957 21 6 5.8956 -8.1167 -2.9568 22 1 6.5910 -8.4837 -2.2165 23 6 5.9947 -8.5439 -4.2754 24 7 5.1489 -8.0969 -5.1763 25 14 7.3312 -9.7527 -4.7675 26 1 6.8237 -11.1401 -4.6170 27 1 7.7152 -9.5168 -6.1825 28 1 8.5171 -9.5619 -3.8943 29 6 2.3490 -2.7659 2.5124 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.9609 -2.1898 -0.5435 37 1 0.3341 -3.3166 0.6896 38 1 3.0963 -3.4094 -0.6025 39 1 1.7505 -4.5210 -0.9352 40 1 4.4785 -2.6428 0.8935 41 1 5.2951 -3.2461 2.3747 42 1 5.5426 -4.4618 -0.1272 43 1 5.7471 -5.3273 1.4199 44 1 2.7633 -6.2719 -1.1307 45 1 3.8600 -4.9161 -1.4876 46 1 4.2907 -6.8991 -3.2608 47 1 5.2184 -8.3949 -6.0967 48 1 1.4913 -3.1336 3.0757 49 1 2.9126 -2.0706 3.1346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732599108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:39 Heat of formation + Delta-G solvation = -98.549258 kcal Electronic energy + Delta-G solvation = -31708.214313 eV Core-core repulsion = 27392.092422 eV Total energy + Delta-G solvation = -4316.121891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.38522 -41.06938 -39.45949 -37.86847 -35.97642 -34.20779 -33.85212 -32.84920 -31.20134 -31.04555 -29.27218 -27.89941 -27.00641 -25.58954 -24.26922 -23.46265 -22.85069 -20.87846 -20.21996 -18.96510 -18.84616 -18.03412 -17.77142 -16.87672 -16.42318 -16.04641 -15.97894 -15.37243 -15.22622 -14.95759 -14.71250 -14.47343 -14.00986 -13.88435 -13.70626 -13.52881 -13.39062 -13.24612 -12.96117 -12.80896 -12.78608 -12.52603 -12.43669 -12.36777 -12.11861 -12.04447 -11.91789 -11.65893 -11.40618 -11.30185 -11.08425 -10.92933 -10.72199 -10.47437 -10.40935 -10.37144 -10.18632 -9.97490 -9.46305 -9.01523 -8.40257 -7.92832 -7.81094 -6.38531 -3.78984 2.07317 2.54365 3.19793 3.27991 3.33989 3.72826 3.93238 3.97851 3.98003 4.16778 4.23511 4.32918 4.43527 4.51988 4.75454 4.81302 4.91832 4.99537 5.05175 5.12349 5.12686 5.21813 5.24837 5.29967 5.33174 5.40212 5.45293 5.47433 5.54800 5.56122 5.60621 5.70512 5.74238 5.78129 5.84244 5.93929 5.98541 6.09928 6.25746 6.29613 6.34546 6.52259 6.98112 7.24351 7.29230 7.58170 7.67598 8.10066 8.66075 9.22063 9.58758 10.11258 10.79431 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002690 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.789073 B =10407.929459 C =11223.389208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 C -0.158 4.158 4 F -0.189 7.189 5 C 0.505 3.495 6 O -0.526 6.526 7 N -0.593 5.593 8 C 0.091 3.909 9 C -0.164 4.164 10 C 0.079 3.921 11 H 0.098 0.902 12 C -0.105 4.105 13 H 0.096 0.904 14 C -0.134 4.134 15 C 0.058 3.942 16 N -0.501 5.501 17 C 0.039 3.961 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.119 3.881 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.070 0.930 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 17.343 10.155 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.081 3.919 3 C -0.215 4.215 4 F -0.170 7.170 5 C 0.291 3.709 6 O -0.402 6.402 7 N -0.325 5.325 8 C -0.032 4.032 9 C -0.203 4.203 10 C -0.029 4.029 11 H 0.116 0.884 12 C -0.125 4.125 13 H 0.114 0.886 14 C -0.172 4.172 15 C -0.070 4.070 16 N -0.224 5.224 17 C -0.092 4.092 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.004 4.004 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.070 0.930 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.770 16.835 11.216 23.922 hybrid contribution 0.238 0.112 -1.483 1.506 sum -12.532 16.947 9.733 23.216 Atomic orbital electron populations 1.22521 0.91427 1.04670 1.04857 1.21160 0.96459 0.93539 0.80712 1.22170 1.03277 0.92091 1.03996 1.92894 1.90176 1.82175 1.51745 1.20760 0.79390 0.82196 0.88564 1.90719 1.42480 1.65363 1.41665 1.47597 1.57790 1.06207 1.20922 1.22184 0.95630 0.94289 0.91048 1.22644 1.00206 0.97804 0.99620 1.22791 0.94074 0.92772 0.93295 0.88400 1.21825 0.95223 0.95970 0.99446 0.88624 1.22739 0.96138 0.98300 1.00031 1.22772 0.92955 0.91566 0.99708 1.63753 1.01024 1.42543 1.15113 1.22109 0.99824 0.98421 0.88866 1.19813 0.87792 0.86124 0.83376 1.90518 1.44960 1.60216 1.50337 1.41857 1.30294 1.40740 1.07544 1.19685 1.08971 1.19733 0.94253 0.88013 1.25240 0.98476 0.98744 0.95523 1.69610 1.37033 1.44741 1.03116 0.85876 0.80746 0.80149 0.77630 1.20429 1.20973 1.19471 1.20675 0.98284 0.94033 0.87405 0.89933 0.89787 0.90375 0.90728 0.90520 0.89737 0.88138 0.90617 0.90775 0.89739 0.91911 0.90856 0.93118 0.89855 0.89488 0.93026 0.77582 0.91950 0.91200 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 8.60 37.16 0.32 -0.72 16 2 C 0.10 0.91 1.20 -91.77 -0.11 0.80 16 3 C -0.16 -1.25 8.28 37.16 0.31 -0.94 16 4 F -0.19 -1.99 14.46 2.25 0.03 -1.96 16 5 C 0.51 5.61 6.79 -10.99 -0.07 5.54 16 6 O -0.53 -7.32 15.42 5.56 0.09 -7.23 16 7 N -0.59 -5.91 2.77 -175.78 -0.49 -6.39 16 8 C 0.09 0.78 4.97 -3.78 -0.02 0.76 16 9 C -0.16 -1.76 3.73 -26.78 -0.10 -1.86 16 10 C 0.08 0.95 3.70 -65.96 -0.24 0.70 16 11 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.10 -1.16 2.94 -90.51 -0.27 -1.42 16 13 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.13 -1.73 5.89 -25.21 -0.15 -1.88 16 15 C 0.06 0.95 5.34 -2.52 -0.01 0.93 16 16 N -0.50 -8.22 4.86 -223.95 -1.09 -9.31 16 17 C 0.04 0.70 3.87 -4.97 -0.02 0.68 16 18 C 0.44 10.58 7.47 -10.99 -0.08 10.50 16 19 O -0.58 -15.81 15.12 5.54 0.08 -15.73 16 20 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.12 1.17 5.74 -5.94 -0.03 1.13 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.42 5.94 -51.93 -0.31 0.11 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.63 7.99 -51.93 -0.41 0.21 16 36 H 0.10 0.82 3.90 -51.92 -0.20 0.61 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.96 5.91 -51.93 -0.31 0.65 16 39 H 0.08 0.87 6.89 -51.93 -0.36 0.51 16 40 H 0.06 0.87 7.41 -51.93 -0.38 0.48 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.92 7.35 -51.93 -0.38 0.54 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.09 1.38 7.42 -51.93 -0.39 1.00 16 45 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 46 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 1.01 6.94 -51.92 -0.36 0.65 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -33.29 376.36 -8.27 -41.56 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.49 Total: 9.49 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.72 Total: 6.20 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.91 Total: -54.26 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.03 Total: -1.96 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.29 -8.27 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732599108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.984 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds