Wall clock time and date at job start Wed Apr 1 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 F 1.39902 * 109.47359 * 239.99742 * 2 1 3 5 5 C 1.50698 * 109.46723 * 119.99925 * 2 1 3 6 6 O 1.21282 * 119.99925 * 249.99761 * 5 2 1 7 7 N 1.34779 * 119.99861 * 70.00703 * 5 2 1 8 8 C 1.47211 * 121.35879 * 359.97438 * 7 5 2 9 9 C 1.52763 * 107.75826 * 121.93225 * 8 7 5 10 10 C 1.53149 * 110.83546 * 57.88335 * 9 8 7 11 11 H 1.09002 * 112.21101 * 70.60680 * 10 9 8 12 12 C 1.53933 * 110.88323 * 304.70328 * 10 9 8 13 13 H 1.09002 * 109.49884 * 171.14964 * 12 10 9 14 14 C 1.54178 * 102.28773 * 287.21950 * 12 10 9 15 15 C 1.54719 * 102.14446 * 322.30427 * 14 12 10 16 16 N 1.47631 * 107.20524 * 21.62714 * 15 14 12 17 17 C 1.46901 * 111.00076 * 125.56253 * 16 15 14 18 18 C 1.50701 * 109.47020 * 69.87634 * 17 16 15 19 19 O 1.21297 * 119.99947 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99896 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99846 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99999 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99744 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99695 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47059 * 90.00397 * 25 23 21 27 27 H 1.48504 * 109.46628 * 210.00370 * 25 23 21 28 28 H 1.48499 * 109.46944 * 330.00008 * 25 23 21 29 29 C 1.44807 * 121.77210 * 179.97438 * 7 5 2 30 30 H 1.08998 * 109.46987 * 300.00146 * 1 2 3 31 31 H 1.09002 * 109.46703 * 60.00161 * 1 2 3 32 32 H 1.08995 * 109.46927 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46965 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47044 * 299.99644 * 3 2 1 35 35 H 1.09002 * 109.46945 * 59.99605 * 3 2 1 36 36 H 1.09007 * 109.79904 * 2.37312 * 8 7 5 37 37 H 1.08993 * 109.80571 * 241.49921 * 8 7 5 38 38 H 1.09002 * 109.20382 * 297.53778 * 9 8 7 39 39 H 1.08998 * 109.16908 * 178.21151 * 9 8 7 40 40 H 1.08996 * 110.87498 * 80.46733 * 14 12 10 41 41 H 1.08998 * 110.86865 * 204.14423 * 14 12 10 42 42 H 1.09005 * 109.89571 * 141.02645 * 15 14 12 43 43 H 1.08997 * 109.89187 * 262.06006 * 15 14 12 44 44 H 1.08991 * 109.46867 * 189.87440 * 17 16 15 45 45 H 1.08999 * 109.46886 * 309.87930 * 17 16 15 46 46 H 0.97002 * 120.00337 * 359.97438 * 20 18 17 47 47 H 0.96998 * 119.99842 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.22616 * 111.48024 * 29 7 5 49 49 H 1.09009 * 107.97689 * 352.97189 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0322 -0.7104 1.2305 6 8 2.5731 -0.0816 2.1154 7 7 1.8806 -2.0445 1.3475 8 6 1.2284 -2.8368 0.2920 9 6 2.2220 -3.8995 -0.1741 10 6 2.6630 -4.7835 0.9962 11 1 1.8644 -5.4413 1.3394 12 6 3.2361 -3.9308 2.1425 13 1 3.3959 -4.5593 3.0186 14 6 4.5981 -3.4872 1.5722 15 6 5.0566 -4.7501 0.8050 16 7 3.8487 -5.5481 0.5158 17 6 3.7411 -5.8391 -0.9200 18 6 4.8186 -6.8151 -1.3168 19 8 5.5996 -7.2274 -0.4854 20 7 4.9151 -7.2291 -2.5957 21 6 5.8956 -8.1167 -2.9568 22 1 6.5910 -8.4837 -2.2165 23 6 5.9947 -8.5439 -4.2754 24 7 5.1489 -8.0969 -5.1763 25 14 7.3312 -9.7527 -4.7675 26 1 6.8237 -11.1401 -4.6170 27 1 7.7152 -9.5168 -6.1825 28 1 8.5171 -9.5619 -3.8943 29 6 2.3490 -2.7659 2.5124 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.9609 -2.1898 -0.5435 37 1 0.3341 -3.3166 0.6896 38 1 3.0963 -3.4094 -0.6025 39 1 1.7505 -4.5210 -0.9352 40 1 4.4785 -2.6428 0.8935 41 1 5.2951 -3.2461 2.3747 42 1 5.5426 -4.4618 -0.1272 43 1 5.7471 -5.3273 1.4199 44 1 2.7633 -6.2719 -1.1307 45 1 3.8600 -4.9161 -1.4876 46 1 4.2907 -6.8991 -3.2608 47 1 5.2184 -8.3949 -6.0967 48 1 1.4913 -3.1336 3.0757 49 1 2.9126 -2.0706 3.1346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732599108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:37 Heat of formation + Delta-G solvation = -122.299595 kcal Electronic energy + Delta-G solvation = -31709.244205 eV Core-core repulsion = 27392.092422 eV Total energy + Delta-G solvation = -4317.151783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.12366 -42.03572 -40.58455 -39.58342 -37.01707 -35.90127 -34.86834 -33.89743 -33.20234 -32.10376 -30.34689 -28.44533 -28.42312 -26.77788 -25.88623 -24.32149 -23.70490 -22.27536 -21.02539 -20.70101 -19.82195 -19.73204 -18.81796 -17.96220 -17.48731 -17.13707 -16.97226 -16.61036 -16.52697 -16.16079 -15.83087 -15.61203 -15.58137 -15.45852 -14.77569 -14.61053 -14.34621 -14.24162 -13.79673 -13.75778 -13.66343 -13.50363 -13.48169 -13.37598 -13.23086 -13.10908 -13.00228 -12.88530 -12.81119 -12.63721 -12.42182 -12.19167 -12.12369 -11.91538 -11.80980 -11.51253 -11.47930 -11.36192 -10.80046 -10.32520 -10.00255 -9.80635 -9.16082 -8.46397 -5.94863 1.25608 1.37164 1.40461 1.53126 1.80124 2.06629 2.28129 2.74883 3.02487 3.19852 3.30097 3.41057 3.51228 3.58220 3.62730 3.71540 3.78598 3.95536 4.03752 4.21628 4.24371 4.36465 4.39609 4.44404 4.50760 4.52844 4.57809 4.60805 4.63821 4.67069 4.68315 4.74065 4.81196 4.86789 4.93479 4.95064 5.07111 5.09547 5.12828 5.19295 5.32781 5.40678 5.47632 5.87483 5.99439 6.11284 6.20175 6.61611 6.87057 7.13728 7.57323 8.13921 8.71110 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002690 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.789073 B =10407.929459 C =11223.389208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 C -0.157 4.157 4 F -0.201 7.201 5 C 0.498 3.502 6 O -0.562 6.562 7 N -0.592 5.592 8 C 0.095 3.905 9 C -0.160 4.160 10 C 0.082 3.918 11 H 0.120 0.880 12 C -0.095 4.095 13 H 0.103 0.897 14 C -0.123 4.123 15 C 0.062 3.938 16 N -0.521 5.521 17 C 0.057 3.943 18 C 0.438 3.562 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.275 1.275 29 C 0.123 3.877 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.099 0.901 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 17.729 9.998 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.078 3.922 3 C -0.215 4.215 4 F -0.181 7.181 5 C 0.285 3.715 6 O -0.441 6.441 7 N -0.323 5.323 8 C -0.027 4.027 9 C -0.200 4.200 10 C -0.025 4.025 11 H 0.138 0.862 12 C -0.115 4.115 13 H 0.121 0.879 14 C -0.161 4.161 15 C -0.066 4.066 16 N -0.244 5.244 17 C -0.075 4.075 18 C 0.226 3.774 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.200 1.200 29 C 0.000 4.000 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.371 17.225 11.040 25.590 hybrid contribution 1.069 -0.008 -1.404 1.765 sum -14.302 17.217 9.636 24.369 Atomic orbital electron populations 1.22540 0.88654 1.05670 1.06089 1.21335 0.98491 0.93197 0.79206 1.22192 1.02033 0.92090 1.05199 1.92874 1.90559 1.82465 1.52225 1.21229 0.78821 0.82522 0.88892 1.90700 1.44073 1.66180 1.43105 1.47703 1.57344 1.06092 1.21193 1.22303 0.95683 0.93594 0.91124 1.22575 0.99919 0.98250 0.99220 1.22963 0.92742 0.92975 0.93805 0.86243 1.21796 0.93964 0.96460 0.99279 0.87890 1.22612 0.97783 0.96120 0.99590 1.22601 0.92944 0.92731 0.98349 1.63681 1.02580 1.44069 1.14116 1.21934 0.98319 0.97149 0.90066 1.20924 0.88258 0.85921 0.82311 1.90486 1.46855 1.61749 1.51310 1.41922 1.30151 1.40848 1.08402 1.19625 1.10186 1.21775 0.94604 0.90605 1.26006 1.00370 0.99902 0.94920 1.69666 1.37804 1.45140 1.03500 0.84959 0.77811 0.78148 0.77602 1.19508 1.19460 1.20016 1.20665 0.98908 0.93011 0.87441 0.89085 0.88205 0.89494 0.92748 0.88485 0.89344 0.87421 0.87421 0.93387 0.88655 0.92844 0.90201 0.95849 0.92433 0.86797 0.91758 0.77054 0.91305 0.88286 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.60 71.98 0.62 -0.88 16 2 C 0.10 1.58 1.20 -11.54 -0.01 1.57 16 3 C -0.16 -2.34 8.28 71.98 0.60 -1.74 16 4 F -0.20 -3.93 14.46 44.97 0.65 -3.28 16 5 C 0.50 10.42 6.79 87.66 0.59 11.02 16 6 O -0.56 -15.42 15.42 -3.04 -0.05 -15.46 16 7 N -0.59 -10.45 2.77 -828.43 -2.30 -12.75 16 8 C 0.10 1.31 4.97 86.16 0.43 1.74 16 9 C -0.16 -3.07 3.73 30.57 0.11 -2.96 16 10 C 0.08 1.78 3.70 44.87 0.17 1.95 16 11 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.10 -1.94 2.94 -10.72 -0.03 -1.97 16 13 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.12 -3.19 5.89 31.58 0.19 -3.00 16 15 C 0.06 2.11 5.34 86.75 0.46 2.57 16 16 N -0.52 -16.87 4.86 -862.43 -4.19 -21.05 16 17 C 0.06 1.98 3.87 85.56 0.33 2.32 16 18 C 0.44 21.44 7.47 87.66 0.65 22.10 16 19 O -0.62 -35.29 15.12 -3.08 -0.05 -35.34 16 20 N -0.58 -30.13 5.29 -306.98 -1.62 -31.76 16 21 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.04 13.05 21.67 0.28 -49.76 16 25 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 29 C 0.12 2.11 5.74 86.05 0.49 2.61 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.61 5.94 -2.39 -0.01 0.59 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.23 7.99 -2.39 -0.02 1.21 16 36 H 0.11 1.40 3.90 -2.38 -0.01 1.39 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.19 5.91 -2.39 -0.01 1.18 16 39 H 0.10 1.64 6.89 -2.39 -0.02 1.63 16 40 H 0.05 1.50 7.41 -2.39 -0.02 1.48 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.02 0.89 7.35 -2.38 -0.02 0.88 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.11 3.39 7.42 -2.39 -0.02 3.37 16 45 H 0.06 2.12 6.32 -2.39 -0.02 2.10 16 46 H 0.40 19.58 7.90 -92.71 -0.73 18.84 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.62 6.94 -2.38 -0.02 1.60 16 Total: -1.00 -74.98 376.36 0.89 -74.10 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.25 Total: 32.98 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 5.88 Total: 16.69 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -7.83 Total: -115.31 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.09 Total: -50.80 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.65 Total: -3.28 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.98 0.89 -74.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732599108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.201 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds